dealii: add scalapack and various cleanups (#6552)
This commit is contained in:
Denis Davydov
Massimiliano Culpo
parent
f564e02301
commit
e9c66a76f0
3 changed files with 81 additions and 72 deletions
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@ -24,7 +24,6 @@
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##############################################################################
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from spack import *
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from spack.build_systems.cuda import CudaPackage
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import os
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class Dealii(CMakePackage, CudaPackage):
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@ -70,6 +69,8 @@ class Dealii(CMakePackage, CudaPackage):
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description='Compile with P4est (only with MPI)')
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variant('petsc', default=True,
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description='Compile with Petsc (only with MPI)')
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variant('scalapack', default=False,
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description='Compile with ScaLAPACK (only with MPI)')
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variant('sundials', default=False,
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description='Compile with Sundials')
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variant('slepc', default=True,
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@ -87,79 +88,83 @@ class Dealii(CMakePackage, CudaPackage):
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values=('Debug', 'Release', 'DebugRelease'))
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# required dependencies, light version
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depends_on("blas")
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depends_on('blas')
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# Boost 1.58 is blacklisted, see
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# https://github.com/dealii/dealii/issues/1591
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# Require at least 1.59
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# There are issues with 1.65.1 but not with 1.65.0:
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# https://github.com/dealii/dealii/issues/5262
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# +python won't affect @:8.4.2
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# FIXME: once concretizer can unite unconditional and
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# conditional dependencies, simplify to:
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# depends_on("boost@1.59.0+thread+system+serialization+iostreams")
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# depends_on("boost+mpi", when='+mpi')
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# depends_on("boost+python", when='+python')
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depends_on("boost@1.59.0:1.63,1.66:+thread+system+serialization+iostreams",
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# depends_on('boost@1.59.0+thread+system+serialization+iostreams')
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# depends_on('boost+mpi', when='+mpi')
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# depends_on('boost+python', when='+python')
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depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams',
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when='@:8.4.2~mpi')
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depends_on("boost@1.59.0:1.63,1.66:+thread+system+serialization+iostreams+mpi",
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depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+mpi',
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when='@:8.4.2+mpi')
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# since @8.5.0: (and @develop) python bindings are introduced:
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depends_on("boost@1.59.0:1.63,1.66:+thread+system+serialization+iostreams",
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depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams',
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when='@8.5.0:~mpi~python')
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depends_on("boost@1.59.0:1.63,1.66:+thread+system+serialization+iostreams+mpi",
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depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+mpi',
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when='@8.5.0:+mpi~python')
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depends_on("boost@1.59.0:1.63,1.66:+thread+system+serialization+iostreams+python",
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depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+python',
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when='@8.5.0:~mpi+python')
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depends_on("boost@1.59.0:1.63,1.66:+thread+system+serialization+iostreams+mpi+python",
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depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+mpi+python',
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when='@8.5.0:+mpi+python')
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# bzip2 is not needed since 9.0
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depends_on("bzip2", when='@:8.99')
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depends_on("lapack")
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depends_on("muparser")
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depends_on("suite-sparse")
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depends_on("tbb")
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depends_on("zlib")
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depends_on('bzip2', when='@:8.99')
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depends_on('lapack')
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depends_on('muparser')
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depends_on('suite-sparse')
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depends_on('tbb')
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depends_on('zlib')
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# optional dependencies
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depends_on("mpi", when="+mpi")
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depends_on("adol-c@2.6.4:", when='@9.0:+adol-c')
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depends_on("arpack-ng+mpi", when='+arpack+mpi')
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depends_on("assimp", when='@9.0:+assimp')
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depends_on("doxygen+graphviz", when='+doc')
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depends_on("graphviz", when='+doc')
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depends_on("gsl", when='@8.5.0:+gsl')
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depends_on("hdf5+mpi+hl", when='+hdf5+mpi')
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depends_on("cuda@8:", when='+cuda')
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depends_on("cmake@3.9:", when='+cuda')
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depends_on('mpi', when='+mpi')
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depends_on('adol-c@2.6.4:', when='@9.0:+adol-c')
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depends_on('arpack-ng+mpi', when='+arpack+mpi')
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depends_on('assimp', when='@9.0:+assimp')
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depends_on('doxygen+graphviz', when='+doc')
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depends_on('graphviz', when='+doc')
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depends_on('gsl', when='@8.5.0:+gsl')
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depends_on('hdf5+mpi+hl', when='+hdf5+mpi')
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depends_on('cuda@8:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda')
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# currently deal.II does not build with Cmake 3.10, see
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# https://github.com/dealii/dealii/issues/5510
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depends_on("cmake@:3.9.99")
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depends_on('cmake@:3.9.99')
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# FIXME: concretizer bug. The two lines mimic what comes from PETSc
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# but we should not need it
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depends_on("metis@5:+int64+real64", when='+metis+int64')
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depends_on("metis@5:~int64+real64", when='+metis~int64')
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depends_on("nanoflann", when="@9.0:+nanoflann")
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depends_on("netcdf+mpi", when="+netcdf+mpi")
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depends_on("netcdf-cxx", when='+netcdf+mpi')
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depends_on("oce", when='+oce')
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depends_on("p4est", when='+p4est+mpi')
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depends_on("petsc+mpi~int64", when='+petsc+mpi~int64')
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depends_on("petsc+mpi+int64", when='+petsc+mpi+int64')
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depends_on("petsc@:3.6.4", when='@:8.4.1+petsc+mpi')
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depends_on('metis@5:+int64+real64', when='+metis+int64')
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depends_on('metis@5:~int64+real64', when='+metis~int64')
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depends_on('nanoflann', when='@9.0:+nanoflann')
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depends_on('netcdf+mpi', when='+netcdf+mpi')
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depends_on('netcdf-cxx', when='+netcdf+mpi')
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depends_on('oce', when='+oce')
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depends_on('p4est', when='+p4est+mpi')
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depends_on('petsc+mpi~int64', when='+petsc+mpi~int64')
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depends_on('petsc+mpi+int64', when='+petsc+mpi+int64')
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depends_on('petsc@:3.6.4', when='@:8.4.1+petsc+mpi')
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depends_on('python', when='@8.5.0:+python')
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depends_on("slepc", when='+slepc+petsc+mpi')
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depends_on("slepc@:3.6.3", when='@:8.4.1+slepc+petsc+mpi')
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depends_on("slepc~arpack", when='+slepc+petsc+mpi+int64')
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depends_on("sundials~pthread", when='@9.0:+sundials')
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depends_on("trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos", when='+trilinos+mpi~int64')
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depends_on("trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos~hypre", when="+trilinos+mpi+int64")
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depends_on('scalapack', when='@9.0:+scalapack')
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depends_on('slepc', when='+slepc+petsc+mpi')
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depends_on('slepc@:3.6.3', when='@:8.4.1+slepc+petsc+mpi')
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depends_on('slepc~arpack', when='+slepc+petsc+mpi+int64')
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depends_on('sundials~pthread', when='@9.0:+sundials')
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+rol+sacado+teuchos', when='+trilinos+mpi~int64')
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+rol+sacado+teuchos~hypre', when='+trilinos+mpi+int64')
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# check that the combination of variants makes sense
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conflicts('+assimp', when='@:8.5.1')
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conflicts('+nanoflann', when='@:8.5.1')
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conflicts('+scalapack', when='@:8.5.1')
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conflicts('+sundials', when='@:8.5.1')
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conflicts('+adol-c', when='@:8.5.1')
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conflicts('+gsl', when='@:8.4.2')
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conflicts('+python', when='@:8.4.2')
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for p in ['+arpack', '+hdf5', '+netcdf', '+p4est', '+petsc',
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for p in ['+arpack', '+hdf5', '+netcdf', '+p4est', '+petsc', '+scalapack',
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'+slepc', '+trilinos']:
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conflicts(p, when='~mpi')
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@ -269,7 +274,7 @@ def cmake_args(self):
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# variables:
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for library in (
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'gsl', 'hdf5', 'p4est', 'petsc', 'slepc', 'trilinos', 'metis',
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'sundials', 'nanoflann'):
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'sundials', 'nanoflann', 'assimp'):
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if library in spec:
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options.extend([
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'-D%s_DIR=%s' % (library.upper(), spec[library].prefix),
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@ -309,36 +314,12 @@ def cmake_args(self):
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'-DDEAL_II_WITH_ARPACK=OFF'
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])
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# Assimp
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if '+assimp' in spec:
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options.extend([
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'-DDEAL_II_WITH_ASSIMP=ON',
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'-DASSIMP_DIR=%s' % spec['assimp'].prefix
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_ASSIMP=OFF'
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])
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# since Netcdf is spread among two, need to do it by hand:
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if '+netcdf' in spec and '+mpi' in spec:
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# take care of lib64 vs lib installed lib locations:
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if os.path.isdir(spec['netcdf-cxx'].prefix.lib):
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netcdfcxx_lib_dir = spec['netcdf-cxx'].prefix.lib
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else:
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netcdfcxx_lib_dir = spec['netcdf-cxx'].prefix.lib64
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if os.path.isdir(spec['netcdf'].prefix.lib):
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netcdf_lib_dir = spec['netcdf'].prefix.lib
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else:
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netcdf_lib_dir = spec['netcdf'].prefix.lib64
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netcdf = spec['netcdf-cxx'].libs + spec['netcdf'].libs
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options.extend([
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'-DNETCDF_FOUND=true',
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'-DNETCDF_LIBRARIES=%s;%s' % (
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join_path(netcdfcxx_lib_dir,
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'libnetcdf_c++.%s' % dso_suffix),
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join_path(netcdf_lib_dir,
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'libnetcdf.%s' % dso_suffix)),
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'-DNETCDF_LIBRARIES=%s' % netcdf.joined(';'),
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'-DNETCDF_INCLUDE_DIRS=%s;%s' % (
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spec['netcdf-cxx'].prefix.include,
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spec['netcdf'].prefix.include),
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@ -348,6 +329,20 @@ def cmake_args(self):
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'-DDEAL_II_WITH_NETCDF=OFF'
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])
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if '+scalapack' in spec:
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scalapack = spec['scalapack'].libs
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options.extend([
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'-DSCALAPACK_FOUND=true',
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'-DSCALAPACK_INCLUDE_DIRS=%s' % (
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spec['scalapack'].prefix.include),
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'-DSCALAPACK_LIBRARIES=%s' % scalapack.joined(';'),
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'-DDEAL_II_WITH_SCALAPACK=ON'
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])
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else:
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options.extend([
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'-DDEAL_II_WITH_SCALAPACK=OFF'
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])
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# Open Cascade
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if '+oce' in spec:
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options.extend([
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@ -37,3 +37,10 @@ class NetcdfCxx(AutotoolsPackage):
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version('4.2', 'd32b20c00f144ae6565d9e98d9f6204c')
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depends_on('netcdf')
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@property
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def libs(self):
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shared = True
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return find_libraries(
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'libnetcdf_c++', root=self.prefix, shared=shared, recurse=True
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)
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@ -40,3 +40,10 @@ class NetcdfCxx4(AutotoolsPackage):
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depends_on('libtool', type='build')
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force_autoreconf = True
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@property
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def libs(self):
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shared = True
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return find_libraries(
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'libnetcdf_c++4', root=self.prefix, shared=shared, recurse=True
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)
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