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Tanim (#9158)

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* Added jdk version, added r-ks and r-multicool packages, made some r packages less conservative in their r version requirement

* flake8 fixes

* fix formatting in jdk version cmd

* Added type=('build', 'run') to some R package dependencies,
added some missing dependencies to r-ks. Thanks Adam.

* fix flake8 error
This commit is contained in:
Mike Pozulp 2018-09-07 14:00:52 -07:00 committed by Adam J. Stewart
parent 18ca196753
commit e678266550
8 changed files with 88 additions and 5 deletions
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2
var/spack/repos/builtin/packages/jdk/package.py
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@ -57,6 +57,8 @@ class Jdk(Package):
# symbol in version with '_', otherwise it will be interpreted as a variant
version('10.0.1_10', 'ae8ed645e6af38432a56a847597ac61d4283b7536688dbab44ab536199d1e5a4', curl_options=curl_options,
url='http://download.oracle.com/otn-pub/java/jdk/10.0.1+10/fb4372174a714e6b8c52526dc134031e/jdk-10.0.1_linux-x64_bin.tar.gz')
version('1.8.0_181-b13', 'ef599e322eee42f6769991dd3e3b1a31', curl_options=curl_options,
url='http://download.oracle.com/otn-pub/java/jdk/8u181-b13/96a7b8442fe848ef90c96a2fad6ed6d1/jdk-8u181-linux-x64.tar.gz')
version('1.8.0_172-b11', 'eda2945e8c02b84adbf78f46c37b71c1', curl_options=curl_options,
url='http://download.oracle.com/otn-pub/java/jdk/8u172-b11/a58eab1ec242421181065cdc37240b08/jdk-8u172-linux-x64.tar.gz')
version('1.8.0_141-b15', '8cf4c4e00744bfafc023d770cb65328c', curl_options=curl_options,

2
var/spack/repos/builtin/packages/r-chemometrics/package.py
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@ -39,7 +39,7 @@ class RChemometrics(RPackage):
version('1.3.8', '7fad828bd094b5485fbf20bdf7d3d0d1')
version('1.3.7', 'a9e2f32efb1545421dd96185fd849184')
depends_on('r@3.4.0:3.4.9')
depends_on('r@2.10:', type=('build', 'run'))
depends_on('r-rpart', type=('build', 'run'))
depends_on('r-mclust', type=('build', 'run'))
depends_on('r-lars', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-fnn/package.py
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@ -40,6 +40,6 @@ class RFnn(RPackage):
version('0.6-3', 'f0f0184e50f9f30a36ed5cff24d6cff2')
version('0.6-2', '20648ba934ea32b1b00dafb75e1a830c')
depends_on('r@3.4.0:3.4.9')
depends_on('r@3.0.0:', type=('build', 'run'))
depends_on('r-mvtnorm', type=('build', 'run'))
depends_on('r-chemometrics', type=('build', 'run'))

45
var/spack/repos/builtin/packages/r-ks/package.py Normal file
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@ -0,0 +1,45 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RKs(RPackage):
"""Kernel smoothers for univariate and multivariate data."""
homepage = "https://cran.r-project.org/package=ks"
url = "https://cran.r-project.org/src/contrib/Archive/ks/ks_1.11.2.tar.gz"
version('1.11.2', sha256='9dfd485096e1e67abc7dfcb7b76a83de110dd15bcfeffe5c899605b3a5592961')
depends_on('r@2.10:', type=('build', 'run'))
depends_on('r-fnn@1.1:', type=('build', 'run'))
depends_on('r-kernlab', type=('build', 'run'))
depends_on('r-mclust', type=('build', 'run'))
depends_on('r-multicool', type=('build', 'run'))
depends_on('r-mvtnorm@1.0:', type=('build', 'run'))
depends_on('r-kernsmooth@2.22:', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
depends_on('r-mgcv', type=('build', 'run'))

3
var/spack/repos/builtin/packages/r-lars/package.py
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@ -33,7 +33,8 @@ class RLars(RPackage):
url = "https://cran.r-project.org/src/contrib/lars_1.2.tar.gz"
list_url = "https://cran.rstudio.com/src/contrib/Archive/lars"
depends_on('r@3.4.0:3.4.9')
version('1.2', '2571bae325f6cba1ad0202ea61695b8c')
version('1.1', 'e94f6902aade09b13ec25ba2381384e5')
version('0.9-8', 'e6f9fffab2d83898f6d3d811f04d177f')
depends_on('r@2.10:', type=('build', 'run'))

36
var/spack/repos/builtin/packages/r-multicool/package.py Normal file
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@ -0,0 +1,36 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RMulticool(RPackage):
"""Permutations of multisets in cool-lex order."""
homepage = "https://cran.r-project.org/package=multicool"
url = "https://cran.r-project.org/src/contrib/Archive/multicool/multicool_0.1-9.tar.gz"
version('0.1-9', sha256='bdf92571cef1b649952d155395a92b8683099ee13114f73a9d41fc5d7d49d329')
depends_on('r-rcpp@0.11.2:', type=('build', 'run'))

1
var/spack/repos/builtin/packages/r-pcapp/package.py
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@ -38,5 +38,4 @@ class RPcapp(RPackage):
version('1.9-60', '23dd468abb9fedc11e40166446df1017')
version('1.9-50', 'be44f173404fd6e86ba0a5515711bfa3')
depends_on('r@3.4.0:3.4.9')
depends_on('r-mvtnorm', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-som/package.py
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@ -38,4 +38,4 @@ class RSom(RPackage):
version('0.3-3', 'd4ac444be24f71d08b99974c2f4b96e5')
version('0.3-2', '4ce28f46df68fbb73905711ba2416fac')
depends_on('r@3.4.0:3.4.9')
depends_on('r@2.10:', type=('build', 'run'))