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Bump pysam to 0.14.1. (#7988)

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* py-pysam requires curl.

* py-pysam conflicts with htslib@1.7.

* Bump py-pysam versions.

* Add more dependencies.
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健美猫 2018-05-05 11:11:26 +08:00 committed by Adam J. Stewart
parent 4fe6d9acee
commit dfe0752807
1 changed files with 7 additions and 1 deletions
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var/spack/repos/builtin/packages/py-pysam/package.py
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@ -30,12 +30,18 @@ class PyPysam(PythonPackage):
sets.""" sets."""
homepage = "https://pypi.python.org/pypi/pysam" homepage = "https://pypi.python.org/pypi/pysam"
url = "https://pypi.io/packages/source/p/pysam/pysam-0.11.2.2.tar.gz" url = "https://github.com/pysam-developers/pysam/archive/v0.14.1.tar.gz"
version('0.14.1', 'ad88fa5bbcc0fdf4a936734691d9c9d1')
version('0.13', 'a9b502dd1a7e6403e35e6972211688a2') version('0.13', 'a9b502dd1a7e6403e35e6972211688a2')
version('0.11.2.2', '56230cd5f55b503845915b76c22d620a') version('0.11.2.2', '56230cd5f55b503845915b76c22d620a')
version('0.7.7', 'eaf9f37cbccc5e2708754d045909c1a0') version('0.7.7', 'eaf9f37cbccc5e2708754d045909c1a0')
depends_on('py-setuptools', type='build') depends_on('py-setuptools', type='build')
depends_on('py-cython@0.21:', type='build') depends_on('py-cython@0.21:', type='build')
depends_on('curl')
depends_on('bcftools') depends_on('bcftools')
depends_on('htslib')
depends_on('samtools')
depends_on('htslib@:1.6', when='@:0.13')