hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

hisat2 (package): add version 2.2.0, update homepage (#17600)

Browse source
This commit is contained in:
Justin S 2020-07-21 21:29:18 -05:00 committed by GitHub
parent 983aeea850
commit dedadcd2ea
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 7 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
var/spack/repos/builtin/packages/hisat2/package.py
View file

@ -14,13 +14,18 @@ class Hisat2(MakefilePackage):
exome sequencing data) against the general human population (as well as exome sequencing data) against the general human population (as well as
against a single reference genome).""" against a single reference genome)."""
homepage = "http://ccb.jhu.edu/software/hisat2" homepage = "https://daehwankimlab.github.io/hisat2/"
url = "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip" url = "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip"
version('2.2.0', sha256='0dd55168853b82c1b085f79ed793dd029db163773f52272d7eb51b3b5e4a4cdd',
url='https://cloud.biohpc.swmed.edu/index.php/s/hisat2-220-source/download',
extension='zip')
version('2.1.0', sha256='89a276eed1fc07414b1601947bc9466bdeb50e8f148ad42074186fe39a1ee781') version('2.1.0', sha256='89a276eed1fc07414b1601947bc9466bdeb50e8f148ad42074186fe39a1ee781')
def install(self, spec, prefix): def install(self, spec, prefix):
if spec.satisfies('@:2.1.0'):
install_tree('doc', prefix.doc) install_tree('doc', prefix.doc)
install_tree('example', prefix.example) install_tree('example', prefix.example)
install_tree('hisatgenotype_modules', prefix.hisatgenotype_modules) install_tree('hisatgenotype_modules', prefix.hisatgenotype_modules)
install_tree('hisatgenotype_scripts', prefix.hisatgenotype_scripts) install_tree('hisatgenotype_scripts', prefix.hisatgenotype_scripts)