New package - r-gdata
Data manipulation tools.
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Glenn Johnson
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var/spack/repos/builtin/packages/r-gdata/package.py
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var/spack/repos/builtin/packages/r-gdata/package.py
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RGdata(Package):
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"""Various R programming tools for data manipulation, including: - medical
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unit conversions ('ConvertMedUnits', 'MedUnits'), - combining objects
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('bindData', 'cbindX', 'combine', 'interleave'), - character vector
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operations ('centerText', 'startsWith', 'trim'), - factor manipulation
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('levels', 'reorder.factor', 'mapLevels'), - obtaining information about R
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objects ('object.size', 'elem', 'env', 'humanReadable', 'is.what', 'll',
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'keep', 'ls.funs', 'Args','nPairs', 'nobs'), - manipulating MS-Excel
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formatted files ('read.xls', 'installXLSXsupport', 'sheetCount',
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'xlsFormats'), - generating fixed-width format files ('write.fwf'), -
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extricating components of date & time objects ('getYear', 'getMonth',
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'getDay', 'getHour', 'getMin', 'getSec'), - operations on columns of data
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frames ('matchcols', 'rename.vars'), - matrix operations ('unmatrix',
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'upperTriangle', 'lowerTriangle'), - operations on vectors ('case',
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'unknownToNA', 'duplicated2', 'trimSum'), - operations on data frames
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('frameApply', 'wideByFactor'), - value of last evaluated expression
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('ans'), and - wrapper for 'sample' that ensures consistent behavior for
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both scalar and vector arguments ('resample')."""
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homepage = "https://cran.r-project.org/package=gdata"
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url = "https://cran.r-project.org/src/contrib/gdata_2.17.0.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/gdata"
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version('2.17.0', 'c716b663b9dc16ad8cafe6acc781a75f')
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extends('R')
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depends_on('r-gtools', type=nolink)
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def install(self, spec, prefix):
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R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
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self.stage.source_path)
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60
var/spack/repos/builtin/packages/r-gtools/package.py
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var/spack/repos/builtin/packages/r-gtools/package.py
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RGtools(Package):
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"""Functions to assist in R programming, including: - assist in developing,
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updating, and maintaining R and R packages ('ask', 'checkRVersion',
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'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse
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logit transformations ('logit', 'inv.logit'), - test if a value is missing,
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empty or contains only NA and NULL values ('invalid'), - manipulate R's
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.Last function ('addLast'), - define macros ('defmacro'), - detect odd and
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even integers ('odd', 'even'), - convert strings containing non-ASCII
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characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a
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binary search ('binsearch'), - sort strings containing both numeric and
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character components ('mixedsort'), - create a factor variable from the
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quantiles of a continuous variable ('quantcut'), - enumerate permutations
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and combinations ('combinations', 'permutation'), - calculate and convert
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between fold-change and log-ratio ('foldchange', 'logratio2foldchange',
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'foldchange2logratio'), - calculate probabilities and generate random
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numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply
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a function over adjacent subsets of a vector ('running'), - modify the
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TCP\_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of
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data frames, even if the column names don't match ('smartbind'), - generate
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significance stars from p-values ('stars.pval'), - convert characters
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to/from ASCII codes."""
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homepage = "https://cran.r-project.org/package=gtools"
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url = "https://cran.r-project.org/src/contrib/gtools_3.5.0.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/gtools"
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version('3.5.0', '45f8800c0336d35046641fbacc56bdbb')
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extends('R')
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def install(self, spec, prefix):
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R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
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self.stage.source_path)
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