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py-quast: Create new package (#7254)

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Eric 2018-02-18 07:33:59 -06:00 committed by Massimiliano Culpo
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyQuast(PythonPackage):
"""Quality Assessment Tool for Genome Assemblies"""
homepage = "http://cab.spbu.ru/software/quast"
url = "https://github.com/ablab/quast/archive/quast_4.6.1.tar.gz"
version('4.6.3', '16d77acb2e0f6436b58d9df7b732fb76')
version('4.6.1', '37ccd34e0040c17aa6f990353a92475c')
version('4.6.0', 'c04d62c50ec4d9caa9d7388950b8d144')
depends_on('boost@1.56.0')
depends_on('perl@5.6.0:')
depends_on('python@2.5:,3.3:')
depends_on('py-setuptools', type='build')
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('java', type=('build', 'run'))
depends_on('perl-time-hires', type=('build', 'run'))
depends_on('gnuplot', type=('build', 'run'))
depends_on('mummer', type=('build', 'run'))
depends_on('bedtools2', type=('build', 'run'))
depends_on('bwa', type=('build', 'run'))
depends_on('glimmer', type=('build', 'run'))