py-crossmap: adding new package (#7108)

var/spack/repos/builtin/packages/py-crossmap/package.py

@@ -0,0 +1,39 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyCrossmap(PythonPackage):
+    """CrossMap is a program for convenient conversion of genome
+       coordinates (or annotation files) between different assemblies"""
+
+    homepage = "http://crossmap.sourceforge.net"
+    url      = "https://downloads.sourceforge.net/project/crossmap/CrossMap-0.2.7.tar.gz"
+
+    version('0.2.7', '91dadec9644ee3038f20ee7a6eb8dfb7')
+
+    depends_on('python@2.7:2.7.999', type=('build', 'run'))
+    depends_on('py-cython@0.17:', type='build')
+    depends_on('py-pysam',        type='build')