salmon: update version (#39202)

* salmon: update version

---------

Signed-off-by: Pablo <pablo.aledo@seqera.io>
This commit is contained in:
pabloaledo 2023-08-04 02:57:17 +02:00 committed by GitHub
parent 92e9daec9b
commit d2df0a29ce
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2 changed files with 20 additions and 0 deletions

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@ -0,0 +1,11 @@
--- a/cmake/Modules/Findlibstadenio.cmake
+++ /dev/null
@@ -13,7 +13,7 @@ find_path(STADEN_INCLUDE_DIR io_lib
find_library(STADEN_LIBRARY NAMES staden-read libstaden-read
HINTS ${STADEN_ROOT} ENV STADEN_ROOT PATH_SUFFIXES lib lib64)
-find_library(HTSCODEC_LIBRARY NAMES htscodecs libhtscodecs
+find_library(HTSCODEC_LIBRARY NAMES htscodecs libhtscodecs hts
HINTS ${STADEN_ROOT} ENV STADEN_ROOT PATH_SUFFIXES lib lib64)
if(STADEN_INCLUDE_DIR)

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@ -13,6 +13,7 @@ class Salmon(CMakePackage):
url = "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz"
maintainers("snehring")
version("1.10.2", sha256="976989182160fef3afb4429ee8b85d8dd39ed6ca212bb14d6a65cde0e985fb98")
version("1.9.0", sha256="450d953a5c43fe63fd745733f478d3fbaf24d926cb52731fd38ee21c4990d613")
version("1.4.0", sha256="6d3e25387450710f0aa779a1e9aaa9b4dec842324ff8551d66962d7c7606e71d")
version("0.14.1", sha256="05289170e69b5f291a8403b40d6b9bff54cc38825e9f721c210192b51a19273e")
@ -55,10 +56,18 @@ class Salmon(CMakePackage):
depends_on("libgff")
depends_on("pkgconfig")
depends_on("curl", when="@0.14.1:")
depends_on("htslib", when="@1.10.2")
patch("fix_hts.patch", when="@1.10.2")
conflicts("%gcc@:5.1", when="@0.14.1:")
resources = [
(
"1.10.2",
"pufferfish",
"f225b74833f71dcf767a565345224357fb091f90ce79717abc836814d9ccd101",
),
(
"1.9.0",
"pufferfish",