Merge pull request #1059 from epfl-scitas/packages/mpi_wrappers_with_rpath
MPI : have wrappers set RPATH instead of RUNPATH
This commit is contained in:
Todd Gamblin
GitHub
commit
cec283f608
3 changed files with 85 additions and 92 deletions
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@ -23,15 +23,14 @@
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import os
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class Mpich(Package):
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"""MPICH is a high performance and widely portable implementation of
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the Message Passing Interface (MPI) standard."""
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homepage = "http://www.mpich.org"
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url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz"
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list_url = "http://www.mpich.org/static/downloads/"
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url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz"
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list_url = "http://www.mpich.org/static/downloads/"
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list_depth = 2
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version('3.2', 'f414cfa77099cd1fa1a5ae4e22db508a')
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@ -42,7 +41,8 @@ class Mpich(Package):
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version('3.1', '5643dd176499bfb7d25079aaff25f2ec')
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version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0')
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variant('verbs', default=False, description='Build support for OpenFabrics verbs.')
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variant('verbs', default=False,
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description='Build support for OpenFabrics verbs.')
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variant('pmi', default=True, description='Build with PMI support')
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variant('hydra', default=True, description='Build the hydra process manager')
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@ -57,9 +57,9 @@ def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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spack_env.set('MPICH_FC', spack_fc)
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def setup_dependent_package(self, module, dep_spec):
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self.spec.mpicc = join_path(self.prefix.bin, 'mpicc')
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self.spec.mpicc = join_path(self.prefix.bin, 'mpicc')
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self.spec.mpicxx = join_path(self.prefix.bin, 'mpic++')
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self.spec.mpifc = join_path(self.prefix.bin, 'mpif90')
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self.spec.mpifc = join_path(self.prefix.bin, 'mpif90')
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self.spec.mpif77 = join_path(self.prefix.bin, 'mpif77')
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def install(self, spec, prefix):
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@ -92,7 +92,6 @@ def install(self, spec, prefix):
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self.filter_compilers()
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def filter_compilers(self):
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"""Run after install to make the MPI compilers use the
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compilers that Spack built the package with.
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@ -102,18 +101,20 @@ def filter_compilers(self):
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be bound to whatever compiler they were built with.
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"""
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bin = self.prefix.bin
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mpicc = os.path.join(bin, 'mpicc')
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mpicxx = os.path.join(bin, 'mpicxx')
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mpif77 = os.path.join(bin, 'mpif77')
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mpif90 = os.path.join(bin, 'mpif90')
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mpicc = join_path(bin, 'mpicc')
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mpicxx = join_path(bin, 'mpicxx')
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mpif77 = join_path(bin, 'mpif77')
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mpif90 = join_path(bin, 'mpif90')
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spack_cc = os.environ['CC']
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spack_cxx = os.environ['CXX']
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spack_f77 = os.environ['F77']
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spack_fc = os.environ['FC']
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# Substitute Spack compile wrappers for the real
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# underlying compiler
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kwargs = {'ignore_absent': True, 'backup': False, 'string': True}
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filter_file(env['CC'], self.compiler.cc, mpicc, **kwargs)
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filter_file(env['CXX'], self.compiler.cxx, mpicxx, **kwargs)
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filter_file(env['F77'], self.compiler.f77, mpif77, **kwargs)
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filter_file(env['FC'], self.compiler.fc, mpif90, **kwargs)
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kwargs = { 'ignore_absent' : True, 'backup' : False, 'string' : True }
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filter_file('CC="%s"' % spack_cc , 'CC="%s"' % self.compiler.cc, mpicc, **kwargs)
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filter_file('CXX="%s"'% spack_cxx, 'CXX="%s"' % self.compiler.cxx, mpicxx, **kwargs)
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filter_file('F77="%s"'% spack_f77, 'F77="%s"' % self.compiler.f77, mpif77, **kwargs)
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filter_file('FC="%s"' % spack_fc , 'FC="%s"' % self.compiler.fc, mpif90, **kwargs)
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# Remove this linking flag if present
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# (it turns RPATH into RUNPATH)
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for wrapper in (mpicc, mpicxx, mpif77, mpif90):
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filter_file('-Wl,--enable-new-dtags', '', wrapper, **kwargs)
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@ -23,7 +23,6 @@
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import os
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class Mvapich2(Package):
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@ -245,27 +244,20 @@ def filter_compilers(self):
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be bound to whatever compiler they were built with.
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"""
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bin = self.prefix.bin
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mpicc = os.path.join(bin, 'mpicc')
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mpicxx = os.path.join(bin, 'mpicxx')
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mpif77 = os.path.join(bin, 'mpif77')
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mpif90 = os.path.join(bin, 'mpif90')
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mpicc = join_path(bin, 'mpicc')
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mpicxx = join_path(bin, 'mpicxx')
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mpif77 = join_path(bin, 'mpif77')
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mpif90 = join_path(bin, 'mpif90')
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spack_cc = os.environ['CC']
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spack_cxx = os.environ['CXX']
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spack_f77 = os.environ['F77']
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spack_fc = os.environ['FC']
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# Substitute Spack compile wrappers for the real
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# underlying compiler
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kwargs = {'ignore_absent': True, 'backup': False, 'string': True}
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filter_file(env['CC'], self.compiler.cc, mpicc, **kwargs)
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filter_file(env['CXX'], self.compiler.cxx, mpicxx, **kwargs)
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filter_file(env['F77'], self.compiler.f77, mpif77, **kwargs)
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filter_file(env['FC'], self.compiler.fc, mpif90, **kwargs)
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kwargs = {
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'ignore_absent': True,
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'backup': False,
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'string': True
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}
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filter_file('CC="%s"' % spack_cc,
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'CC="%s"' % self.compiler.cc, mpicc, **kwargs)
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filter_file('CXX="%s"' % spack_cxx,
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'CXX="%s"' % self.compiler.cxx, mpicxx, **kwargs)
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filter_file('F77="%s"' % spack_f77,
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'F77="%s"' % self.compiler.f77, mpif77, **kwargs)
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filter_file('FC="%s"' % spack_fc,
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'FC="%s"' % self.compiler.fc, mpif90, **kwargs)
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# Remove this linking flag if present
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# (it turns RPATH into RUNPATH)
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for wrapper in (mpicc, mpicxx, mpif77, mpif90):
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filter_file('-Wl,--enable-new-dtags', '', wrapper, **kwargs)
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@ -73,20 +73,27 @@ class Openmpi(Package):
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patch('configure.patch', when="@1.10.0:1.10.1")
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variant('psm', default=False, description='Build support for the PSM library.')
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variant('psm2', default=False, description='Build support for the Intel PSM2 library.')
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variant('pmi', default=False, description='Build support for PMI-based launchers')
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variant('verbs', default=_verbs_dir() is not None, description='Build support for OpenFabrics verbs.')
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variant('psm2', default=False,
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description='Build support for the Intel PSM2 library.')
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variant('pmi', default=False,
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description='Build support for PMI-based launchers')
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variant('verbs', default=_verbs_dir() is not None,
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description='Build support for OpenFabrics verbs.')
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variant('mxm', default=False, description='Build Mellanox Messaging support')
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variant('thread_multiple', default=False, description='Enable MPI_THREAD_MULTIPLE support')
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variant('thread_multiple', default=False,
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description='Enable MPI_THREAD_MULTIPLE support')
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# TODO : variant support for alps, loadleveler is missing
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variant('tm', default=False, description='Build TM (Torque, PBSPro, and compatible) support')
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variant('slurm', default=False, description='Build SLURM scheduler component')
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variant('tm', default=False,
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description='Build TM (Torque, PBSPro, and compatible) support')
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variant('slurm', default=False,
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description='Build SLURM scheduler component')
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variant('sqlite3', default=False, description='Build sqlite3 support')
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variant('vt', default=True, description='Build support for contributed package vt')
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variant('vt', default=True,
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description='Build support for contributed package vt')
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# TODO : support for CUDA is missing
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@ -97,8 +104,7 @@ class Openmpi(Package):
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depends_on('sqlite', when='+sqlite3')
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def url_for_version(self, version):
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return "http://www.open-mpi.org/software/ompi/v%s/downloads/openmpi-%s.tar.bz2" % (version.up_to(2), version)
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return "http://www.open-mpi.org/software/ompi/v%s/downloads/openmpi-%s.tar.bz2" % (version.up_to(2), version) # NOQA: ignore=E501
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def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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spack_env.set('OMPI_CC', spack_cc)
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@ -107,14 +113,15 @@ def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
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spack_env.set('OMPI_F77', spack_f77)
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def setup_dependent_package(self, module, dep_spec):
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self.spec.mpicc = join_path(self.prefix.bin, 'mpicc')
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self.spec.mpicc = join_path(self.prefix.bin, 'mpicc')
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self.spec.mpicxx = join_path(self.prefix.bin, 'mpic++')
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self.spec.mpifc = join_path(self.prefix.bin, 'mpif90')
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self.spec.mpifc = join_path(self.prefix.bin, 'mpif90')
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self.spec.mpif77 = join_path(self.prefix.bin, 'mpif77')
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@property
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def verbs(self):
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# Up through version 1.6, this option was previously named --with-openib
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# Up through version 1.6, this option was previously named
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# --with-openib
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if self.spec.satisfies('@:1.6'):
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return 'openib'
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# In version 1.7, it was renamed to be --with-verbs
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@ -143,7 +150,7 @@ def install(self, spec, prefix):
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'--with-psm2' if '+psm2' in spec else '--without-psm2',
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'--with-mxm' if '+mxm' in spec else '--without-mxm',
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# Other options
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'--enable-mpi-thread-multiple' if '+thread_multiple' in spec else '--disable-mpi-thread-multiple',
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'--enable-mpi-thread-multiple' if '+thread_multiple' in spec else '--disable-mpi-thread-multiple', # NOQA: ignore=E501
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'--with-pmi' if '+pmi' in spec else '--without-pmi',
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'--with-sqlite3' if '+sqlite3' in spec else '--without-sqlite3',
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'--enable-vt' if '+vt' in spec else '--disable-vt'
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@ -161,7 +168,7 @@ def install(self, spec, prefix):
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# use this for LANL builds, but for LLNL builds, we need:
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# "--with-platform=contrib/platform/llnl/optimized"
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if self.version == ver("1.6.5") and '+lanl' in spec:
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config_args.append("--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas")
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config_args.append("--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas") # NOQA: ignore=E501
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if not self.compiler.f77 and not self.compiler.fc:
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config_args.append("--enable-mpi-fortran=no")
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@ -181,40 +188,33 @@ def filter_compilers(self):
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be bound to whatever compiler they were built with.
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"""
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kwargs = {'ignore_absent': True, 'backup': False, 'string': False}
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dir = os.path.join(self.prefix, 'share/openmpi/')
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wrapper_basepath = join_path(self.prefix, 'share', 'openmpi')
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cc_wrappers = ['mpicc-vt-wrapper-data.txt', 'mpicc-wrapper-data.txt',
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'ortecc-wrapper-data.txt', 'shmemcc-wrapper-data.txt']
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wrappers = [
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('mpicc-vt-wrapper-data.txt', self.compiler.cc),
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('mpicc-wrapper-data.txt', self.compiler.cc),
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('ortecc-wrapper-data.txt', self.compiler.cc),
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('shmemcc-wrapper-data.txt', self.compiler.cc),
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('mpic++-vt-wrapper-data.txt', self.compiler.cxx),
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('mpic++-wrapper-data.txt', self.compiler.cxx),
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('ortec++-wrapper-data.txt', self.compiler.cxx),
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('mpifort-vt-wrapper-data.txt', self.compiler.fc),
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('mpifort-wrapper-data.txt', self.compiler.fc),
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('shmemfort-wrapper-data.txt', self.compiler.fc),
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('mpif90-vt-wrapper-data.txt', self.compiler.fc),
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('mpif90-wrapper-data.txt', self.compiler.fc),
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('mpif77-vt-wrapper-data.txt', self.compiler.f77),
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('mpif77-wrapper-data.txt', self.compiler.f77)
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]
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cxx_wrappers = ['mpic++-vt-wrapper-data.txt', 'mpic++-wrapper-data.txt',
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'ortec++-wrapper-data.txt']
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fc_wrappers = ['mpifort-vt-wrapper-data.txt',
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'mpifort-wrapper-data.txt', 'shmemfort-wrapper-data.txt']
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for wrapper in cc_wrappers:
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filter_file('compiler=.*', 'compiler=%s' % self.compiler.cc,
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os.path.join(dir, wrapper), **kwargs)
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for wrapper in cxx_wrappers:
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filter_file('compiler=.*', 'compiler=%s' % self.compiler.cxx,
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os.path.join(dir, wrapper), **kwargs)
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for wrapper in fc_wrappers:
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filter_file('compiler=.*', 'compiler=%s' % self.compiler.fc,
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os.path.join(dir, wrapper), **kwargs)
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# These are symlinks in newer versions, so check that here
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f77_wrappers = ['mpif77-vt-wrapper-data.txt', 'mpif77-wrapper-data.txt']
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f90_wrappers = ['mpif90-vt-wrapper-data.txt', 'mpif90-wrapper-data.txt']
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for wrapper in f77_wrappers:
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path = os.path.join(dir, wrapper)
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if not os.path.islink(path):
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filter_file('compiler=.*', 'compiler=%s' % self.compiler.f77,
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path, **kwargs)
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for wrapper in f90_wrappers:
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path = os.path.join(dir, wrapper)
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if not os.path.islink(path):
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filter_file('compiler=.*', 'compiler=%s' % self.compiler.fc,
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path, **kwargs)
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for wrapper_name, compiler in wrappers:
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wrapper = join_path(wrapper_basepath, wrapper_name)
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if not os.path.islink(wrapper):
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# Substitute Spack compile wrappers for the real
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# underlying compiler
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match = 'compiler=.*'
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substitute = 'compiler={compiler}'.format(compiler=compiler)
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filter_file(match, substitute, wrapper, **kwargs)
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# Remove this linking flag if present
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# (it turns RPATH into RUNPATH)
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filter_file('-Wl,--enable-new-dtags', '', wrapper, **kwargs)
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