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Hdf5 cmake (#18937)

Browse source 
* Switch hdf5 package from autotools to cmake.

* Add variant for building with zlib, default to ON.

* Update for format requirements.

* Format change.

* Fix breakage from last merge from develop.
Switch szip to use libaec (unrestricted encryption).
Remove 'static' variant:  static libs will only be installed when
~shared.

* Improve args based on suggestions from pull request.

* Update code URL to github.com
Add/modify 4 depends_on lines to fix running "spack graph --deptype=link hdf5".

* Remove trailing whitespace.

* Remove dependencies added solely to make "spack greph --type=link" work.

* Add new version HDF5 1.8.22.

* Remove unnecessary java_check.

* Fix whitespace for style checks.

* Reverted zlib version dependency to 1.1.2:.
zlib variant removed.
api version default renamed "default".

* Remove blank line.

* Whitespace corrections.

* iRemoved unnecessary 'debug' variant.

* Fix typo in version number in conflict for '+szip'.

* Set default for tools variant to True.
Remove patch functions dependent on 'libtool' file that cmake doesn't
produce.

* Remove line to set ONLY_SHARED_LIBS to true.
Add post_install code to install only one version of tools with shared
linkage and original tool names.

* Remove trailing white space and import of glob package not used.

* Leave BUILD_TESTING set to default which is ON.

* Remove  post_install code to install only one version of tools because
some dependent packages running tests in e4s testing are using
h5diff-shared.  Keep both tools versions for now.

* No longer need to import os.
This commit is contained in:
Larry Knox 2021-06-28 14:42:54 -05:00 committed by GitHub
parent 9a9b5dee2e
commit cc20dbf645
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
6 changed files with 765 additions and 99 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
etc/spack/defaults/packages.yaml
View file

@ -48,7 +48,7 @@ packages:
rpc: [libtirpc]
scalapack: [netlib-scalapack, amdscalapack]
sycl: [hipsycl]
szip: [libszip, libaec]
szip: [libaec, libszip]
tbb: [intel-tbb]
unwind: [libunwind]
uuid: [util-linux-uuid, libuuid]

90
var/spack/repos/builtin/packages/hdf5/1.10.7_cmake.patch Normal file
View file

@ -0,0 +1,90 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 8608c67..4b1a2d6 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -209,7 +209,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
${HDF5_BINARY_DIR}/CMakeFiles/h5fc
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 1eac9fe..e488656 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -120,7 +120,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index 785bdcf..427424e 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -152,7 +152,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 329a2dc..97019fa 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1282,7 +1282,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -1294,6 +1298,20 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()
#-----------------------------------------------------------------------------

104
var/spack/repos/builtin/packages/hdf5/1.12.0_cmake.patch Normal file
View file

@ -0,0 +1,104 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 39f0f3a..9dc69d6 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -196,7 +196,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index b5d1a60..22ed7fb 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -533,7 +533,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5fc
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 866f372..6abd376 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -109,7 +109,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index 55d84c7..857a390 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -133,7 +133,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index f582056..d7ddee4 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1272,7 +1272,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -1284,4 +1288,18 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()

362
var/spack/repos/builtin/packages/hdf5/1.8.21_cmake.patch Normal file
View file

@ -0,0 +1,362 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 9b9b745..3f05fa0 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -178,7 +178,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
diff --git a/config/cmake_ext_mod/FindSZIP.cmake b/config/cmake_ext_mod/FindSZIP.cmake
index 699be85..846a3d1 100644
--- a/config/cmake_ext_mod/FindSZIP.cmake
+++ b/config/cmake_ext_mod/FindSZIP.cmake
@@ -5,140 +5,112 @@
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
+#########################################################################
+
+# - Derived from the FindTiff.cmake and FindJPEG.cmake that is included with cmake
+# FindSZIP
-# - Find SZIP library
-# - Derived from the FindTiff.cmake that is included with cmake
# Find the native SZIP includes and library
-# This module defines
-# SZIP_INCLUDE_DIRS, where to find tiff.h, etc.
-# SZIP_LIBRARIES, libraries to link against to use SZIP.
-# SZIP_FOUND, If false, do not try to use SZIP.
-# also defined, but not for general use are
-# SZIP_LIBRARY, where to find the SZIP library.
-# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
-# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
-# message (STATUS "Finding SZIP library and headers..." )
+# Imported targets
+##################
-############################################
+# This module defines the following :prop_tgt:`IMPORTED` targets:
#
-# Check the existence of the libraries.
+# SZIP::SZIP
+# The SZIP library, if found.
#
-############################################
-# This macro was taken directly from the FindQt4.cmake file that is included
-# with the CMake distribution. This is NOT my work. All work was done by the
-# original authors of the FindQt4.cmake file. Only minor modifications were
-# made to remove references to Qt and make this file more generally applicable
-#########################################################################
+# Result variables
+###################
-macro (SZIP_ADJUST_LIB_VARS basename)
- if (${basename}_INCLUDE_DIR)
+# This module will set the following variables in your project:
- # if only the release version was found, set the debug variable also to the release version
- if (${basename}_LIBRARY_RELEASE AND NOT ${basename}_LIBRARY_DEBUG)
- set (${basename}_LIBRARY_DEBUG ${${basename}_LIBRARY_RELEASE})
- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE})
- set (${basename}_LIBRARIES ${${basename}_LIBRARY_RELEASE})
- endif ()
+# SZIP_FOUND, true if the SZIP headers and libraries were found.
+# SZIP_INCLUDE_DIR, the directory containing the SZIP headers.
+# SZIP_INCLUDE_DIRS, the directory containing the SZIP headers.
+# SZIP_LIBRARIES, libraries to link against to use SZIP.
- # if only the debug version was found, set the release variable also to the debug version
- if (${basename}_LIBRARY_DEBUG AND NOT ${basename}_LIBRARY_RELEASE)
- set (${basename}_LIBRARY_RELEASE ${${basename}_LIBRARY_DEBUG})
- set (${basename}_LIBRARY ${${basename}_LIBRARY_DEBUG})
- set (${basename}_LIBRARIES ${${basename}_LIBRARY_DEBUG})
- endif ()
- if (${basename}_LIBRARY_DEBUG AND ${basename}_LIBRARY_RELEASE)
- # if the generator supports configuration types then set
- # optimized and debug libraries, or if the CMAKE_BUILD_TYPE has a value
- if (CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
- set (${basename}_LIBRARY optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
- else ()
- # if there are no configuration types and CMAKE_BUILD_TYPE has no value
- # then just use the release libraries
- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE} )
- endif ()
- set (${basename}_LIBRARIES optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
- endif ()
+# Cache variables
+#################
- set (${basename}_LIBRARY ${${basename}_LIBRARY} CACHE FILEPATH "The ${basename} library")
+# The following variables may also be set:
- if (${basename}_LIBRARY)
- set (${basename}_FOUND 1)
- endif ()
- endif ()
+# SZIP_LIBRARY, where to find the SZIP library.
+# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
+# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
- # Make variables changeble to the advanced user
- MARK_AS_ADVANCED (${basename}_LIBRARY ${basename}_LIBRARY_RELEASE ${basename}_LIBRARY_DEBUG ${basename}_INCLUDE_DIR )
-endmacro ()
-
-
-# Look for the header file.
-set (SZIP_INCLUDE_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/include
- $ENV{SZIP_INSTALL}/include/szip
- /usr/include
- /usr/include/szip
-)
-
-set (SZIP_LIB_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/lib
- /usr/lib
-)
-
-set (SZIP_BIN_SEARCH_DIRS
- $ENV{SZIP_INSTALL}/bin
- /usr/bin
-)
-
-FIND_PATH (SZIP_INCLUDE_DIR
- NAMES szlib.h
- PATHS ${SZIP_INCLUDE_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-if (WIN32)
- set (SZIP_SEARCH_DEBUG_NAMES "sz_d;libsz_d")
- set (SZIP_SEARCH_RELEASE_NAMES "sz;libsz;libszip")
-else ()
- set (SZIP_SEARCH_DEBUG_NAMES "sz_d")
- set (SZIP_SEARCH_RELEASE_NAMES "sz;szip")
-endif ()
+# message (STATUS "Finding SZIP library and headers..." )
+#########################################################################
-# Look for the library.
-FIND_LIBRARY (SZIP_LIBRARY_DEBUG
- NAMES ${SZIP_SEARCH_DEBUG_NAMES}
- PATHS ${SZIP_LIB_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-FIND_LIBRARY (SZIP_LIBRARY_RELEASE
- NAMES ${SZIP_SEARCH_RELEASE_NAMES}
- PATHS ${SZIP_LIB_SEARCH_DIRS}
- NO_DEFAULT_PATH
-)
-
-SZIP_ADJUST_LIB_VARS (SZIP)
-
-if (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
- set (SZIP_FOUND 1)
- set (SZIP_LIBRARIES ${SZIP_LIBRARY})
- set (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIR})
- if (SZIP_LIBRARY_DEBUG)
- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_DEBUG} PATH)
- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
- elseif ()
- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_RELEASE} PATH)
- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
- endif ()
-else ()
- set (SZIP_FOUND 0)
- set (SZIP_LIBRARIES)
- set (SZIP_INCLUDE_DIRS)
-endif ()
+
+find_path(SZIP_INCLUDE_DIR szlib.h)
+
+set(szip_names ${SZIP_NAMES} sz szip szip-static libsz libszip libszip-static)
+foreach(name ${szip_names})
+ list (APPEND szip_names_debug "${name}d")
+endforeach()
+
+if(NOT SZIP_LIBRARY)
+ find_library(SZIP_LIBRARY_RELEASE NAMES ${szip_names})
+ find_library(SZIP_LIBRARY_DEBUG NAMES ${szip_names_debug})
+ include(SelectLibraryConfigurations)
+ select_library_configurations(SZIP)
+ mark_as_advanced(SZIP_LIBRARY_RELEASE SZIP_LIBRARY_DEBUG)
+endif()
+unset(szip_names)
+unset(szip_names_debug)
+
+if(SZIP_INCLUDE_DIR AND EXISTS "${SZIP_INCLUDE_DIR}/SZconfig.h")
+ file(STRINGS "${SZIP_INCLUDE_DIR}/SZconfig.h" szip_version_str
+ REGEX "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+.*")
+
+ string(REGEX REPLACE "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+([0-9]+).*"
+ "\\1" SZIP_VERSION "${szip_version_str}")
+ unset(szip_version_str)
+endif()
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args(SZIP
+ REQUIRED_VARS SZIP_LIBRARY SZIP_INCLUDE_DIR
+ VERSION_VAR SZIP_VERSION)
+
+if(SZIP_FOUND)
+ set(SZIP_LIBRARIES ${SZIP_LIBRARY})
+ set(SZIP_INCLUDE_DIRS "${SZIP_INCLUDE_DIR}")
+
+ if(NOT TARGET SZIP::SZIP)
+ add_library(SZIP::SZIP UNKNOWN IMPORTED)
+ if(SZIP_INCLUDE_DIRS)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ INTERFACE_INCLUDE_DIRECTORIES "${SZIP_INCLUDE_DIRS}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY}")
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES "C"
+ IMPORTED_LOCATION "${SZIP_LIBRARY}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY_RELEASE}")
+ set_property(TARGET SZIP::SZIP APPEND PROPERTY
+ IMPORTED_CONFIGURATIONS RELEASE)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES_RELEASE "C"
+ IMPORTED_LOCATION_RELEASE "${SZIP_LIBRARY_RELEASE}")
+ endif()
+ if(EXISTS "${SZIP_LIBRARY_DEBUG}")
+ set_property(TARGET SZIP::SZIP APPEND PROPERTY
+ IMPORTED_CONFIGURATIONS DEBUG)
+ set_target_properties(SZIP::SZIP PROPERTIES
+ IMPORTED_LINK_INTERFACE_LANGUAGES_DEBUG "C"
+ IMPORTED_LOCATION_DEBUG "${SZIP_LIBRARY_DEBUG}")
+ endif()
+ endif()
+endif()
+
+mark_as_advanced(SZIP_LIBRARY SZIP_INCLUDE_DIR)
# Report the results.
if (NOT SZIP_FOUND)
@@ -146,36 +118,12 @@ if (NOT SZIP_FOUND)
"SZip was not found. Make sure SZIP_LIBRARY and SZIP_INCLUDE_DIR are set or set the SZIP_INSTALL environment variable."
)
if (NOT SZIP_FIND_QUIETLY)
- message (STATUS "${SZIP_DIR_MESSAGE}")
+ if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+ message (VERBOSE "${SZIP_DIR_MESSAGE}")
+ endif ()
else ()
if (SZIP_FIND_REQUIRED)
message (FATAL_ERROR "SZip was NOT found and is Required by this project")
endif ()
endif ()
endif ()
-
-if (SZIP_FOUND)
- include (CheckSymbolExists)
- #############################################
- # Find out if SZIP was build using dll's
- #############################################
- # Save required variable
- set (CMAKE_REQUIRED_INCLUDES_SAVE ${CMAKE_REQUIRED_INCLUDES})
- set (CMAKE_REQUIRED_FLAGS_SAVE ${CMAKE_REQUIRED_FLAGS})
- # Add SZIP_INCLUDE_DIR to CMAKE_REQUIRED_INCLUDES
- set (CMAKE_REQUIRED_INCLUDES "${CMAKE_REQUIRED_INCLUDES};${SZIP_INCLUDE_DIRS}")
-
- # Restore CMAKE_REQUIRED_INCLUDES and CMAKE_REQUIRED_FLAGS variables
- set (CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES_SAVE})
- set (CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS_SAVE})
- #
- #############################################
-endif ()
-
-if (FIND_SZIP_DEBUG)
- message (STATUS "SZIP_INCLUDE_DIR: ${SZIP_INCLUDE_DIR}")
- message (STATUS "SZIP_INCLUDE_DIRS: ${SZIP_INCLUDE_DIRS}")
- message (STATUS "SZIP_LIBRARY_DEBUG: ${SZIP_LIBRARY_DEBUG}")
- message (STATUS "SZIP_LIBRARY_RELEASE: ${SZIP_LIBRARY_RELEASE}")
- message (STATUS "CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
-endif ()
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 7949b73..a633bdd 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -102,7 +102,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index d570265..e652ed3 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -118,7 +118,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 4d2f1bc..39cfbca 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -820,7 +820,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -832,4 +836,18 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()

121
var/spack/repos/builtin/packages/hdf5/1.8.22_cmake.patch Normal file
View file

@ -0,0 +1,121 @@
diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
index 65d1d43..9e4bf24 100644
--- a/c++/src/CMakeLists.txt
+++ b/c++/src/CMakeLists.txt
@@ -211,7 +211,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5c++
diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
index dd03439..f58dde9 100644
--- a/fortran/src/CMakeLists.txt
+++ b/fortran/src/CMakeLists.txt
@@ -595,7 +595,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5fc
diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
index 1eac9fe..e488656 100644
--- a/hl/c++/src/CMakeLists.txt
+++ b/hl/c++/src/CMakeLists.txt
@@ -120,7 +120,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt
index b309e92..c889736 100644
--- a/hl/fortran/src/CMakeLists.txt
+++ b/hl/fortran/src/CMakeLists.txt
@@ -260,7 +260,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlfc
diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
index cc5aca5..d07f354 100644
--- a/hl/src/CMakeLists.txt
+++ b/hl/src/CMakeLists.txt
@@ -148,7 +148,11 @@ install (
)
if (NOT WIN32 AND NOT MINGW)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 217c55d..521d3fd 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -1129,7 +1129,11 @@ install (
)
if (NOT WIN32)
- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
+ else ()
+ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
+ endif ()
configure_file (
${HDF_RESOURCES_DIR}/libh5cc.in
${HDF5_BINARY_DIR}/CMakeFiles/h5cc
@@ -1141,4 +1145,18 @@ if (NOT WIN32)
PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
COMPONENT libraries
)
+ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
+ #legacy requires a different name
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ @ONLY
+ )
+ install (
+ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
+ DESTINATION ${HDF5_INSTALL_BIN_DIR}
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
+ endif ()
endif ()

185
var/spack/repos/builtin/packages/hdf5/package.py
View file

@ -6,10 +6,8 @@
import shutil
import sys
from spack.util.environment import is_system_path
class Hdf5(AutotoolsPackage):
class Hdf5(CMakePackage):
"""HDF5 is a data model, library, and file format for storing and managing
data. It supports an unlimited variety of datatypes, and is designed for
flexible and efficient I/O and for high volume and complex data.
@ -19,20 +17,18 @@ class Hdf5(AutotoolsPackage):
url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz"
list_url = "https://support.hdfgroup.org/ftp/HDF5/releases"
list_depth = 3
git = "https://bitbucket.hdfgroup.org/scm/hdffv/hdf5.git"
maintainers = ['lrknox']
git = "https://github.com/HDFGroup/hdf5.git"
maintainers = ['lrknox', 'brtnfld', 'byrnHDF', 'ChristopherHogan', 'epourmal',
'gheber', 'hyoklee', 'lkurz', 'soumagne']
test_requires_compiler = True
# We rely on the *.la files to be removed and, therefore, do not try to make
# sure that they are correct. The following is a precaution against someone
# blindly changing the value to True, either here or in the baseclass.
install_libtool_archives = False
version('develop', branch='develop')
version('develop-1.12', branch='hdf5_1_12')
version('develop-1.10', branch='hdf5_1_10')
version('develop-1.8', branch='hdf5_1_8')
version('1.12.0', sha256='a62dcb276658cb78e6795dd29bf926ed7a9bc4edf6e77025cd2c689a8f97c17a')
# HDF5 1.12 broke API compatibility, so we currently prefer the latest
# 1.10 release. packages that want later versions of HDF5 should specify,
# e.g., depends_on("hdf5@1.12:") to get 1.12 or higher.
@ -58,8 +54,6 @@ class Hdf5(AutotoolsPackage):
version('1.8.12', sha256='b5cccea850096962b5fd9e96f22c4f47d2379224bb41130d9bc038bb6c37dfcb')
version('1.8.10', sha256='4813b79c5fb8701a625b9924b8203bc7154a77f9b826ad4e034144b4056a160a')
variant('debug', default=False,
description='Builds a debug version of the library')
variant('shared', default=True,
description='Builds a shared version of the library')
@ -69,32 +63,39 @@ class Hdf5(AutotoolsPackage):
variant('java', default=False, description='Enable Java support')
variant('threadsafe', default=False,
description='Enable thread-safe capabilities')
variant('tools', default=True, description='Enable building tools')
variant('mpi', default=True, description='Enable MPI support')
variant('szip', default=False, description='Enable szip support')
variant('pic', default=True,
description='Produce position-independent code (for shared libs)')
# Build HDF5 with API compaitibility.
variant('api', default='none', description='choose api compatibility', values=('none', 'v114', 'v112', 'v110', 'v18', 'v16'), multi=False)
# Build HDF5 with API compatibility.
variant('api', default='default', description='Choose api compatibility for earlier version', values=('default', 'v114', 'v112', 'v110', 'v18', 'v16'), multi=False)
conflicts('api=v114', when='@1.6:1.12.99', msg='v114 is not compatible with this release')
conflicts('api=v112', when='@1.6:1.10.99', msg='v112 is not compatible with this release')
conflicts('api=v110', when='@1.6:1.8.99', msg='v110 is not compatible with this release')
conflicts('api=v18', when='@1.6:1.6.99', msg='v18 is not compatible with this release')
depends_on('autoconf', type='build', when='@develop')
depends_on('automake', type='build', when='@develop')
depends_on('libtool', type='build', when='@develop')
depends_on('m4', type='build', when='@develop')
depends_on('cmake@3.12:')
depends_on('mpi', when='+mpi')
depends_on('java', when='+java')
depends_on('java', type=('build', 'run'), when='+java')
# numactl does not currently build on darwin
if sys.platform != 'darwin':
depends_on('numactl', when='+mpi+fortran')
depends_on('szip', when='+szip')
depends_on('zlib@1.1.2:')
# The Java wrappers and associated libhdf5_java library
# were first available in 1.10
conflicts('+java', when='@:1.9')
# The Java wrappers cannot be built without shared libs.
conflicts('+java', when='~shared')
# Earlier versions of HDF5 will not correctly find szip without the patches
# in the <version>_cmake.patch files
conflicts('+szip', when='@:1.8.19,1.9.0:1.10.5')
# There are several officially unsupported combinations of the features:
# 1. Thread safety is not guaranteed via high-level C-API but in some cases
# it works.
@ -138,7 +139,7 @@ class Hdf5(AutotoolsPackage):
# Disable MPI C++ interface when C++ is disabled, otherwise downstream
# libraries fail to link; see https://github.com/spack/spack/issues/12586
patch('h5public-skip-mpicxx.patch', when='@:1.8.21,1.10.0:1.10.5+mpi~cxx',
patch('h5public-skip-mpicxx.patch', when='@1.8.10:1.8.21,1.10.0:1.10.5+mpi~cxx',
sha256='b61e2f058964ad85be6ee5ecea10080bf79e73f83ff88d1fa4b602d00209da9c')
# Fixes BOZ literal constant error when compiled with GCC 10.
@ -151,6 +152,15 @@ class Hdf5(AutotoolsPackage):
# based on Libtool 2.4.6.
patch('nag.mpi.libtool.patch', when='@1.8.18:%nag+fortran+mpi+shared')
patch('1.12.0_cmake.patch', when='@1.12.0',
sha256='e5b3bc2eecb693e88ce084dfceb35fdce68a0749945173c4bff7cf29fa81de4c')
patch('1.10.7_cmake.patch', when='@1.10.6:1.10.7',
sha256='dd9491bbe833b13929cb14b52137f7f44a539b4bfc89fc31e6e50a36e3e1b171')
patch('1.8.22_cmake.patch', when='@1.8.22',
sha256='2ca847df0f4aa24e8fe9aa7f156d48aae505a0226ca8df5d3e9b21d8087035bd')
patch('1.8.21_cmake.patch', when='@1.8.21',
sha256='b6a39255b2cc4fdf5767969a3f0cf83fc278b1750221b55ad48352a6ee3e4071')
# The argument 'buf_size' of the C function 'h5fget_file_image_c' is
# declared as intent(in) though it is modified by the invocation. As a
# result, aggressive compilers such as Fujitsu's may do a wrong
@ -190,11 +200,6 @@ def flag_handler(self, name, flags):
return (None, None, flags)
@when('@develop')
def autoreconf(self, spec, prefix):
autogen = Executable('./autogen.sh')
autogen()
@property
def libs(self):
"""HDF5 can be queried for the following parameters:
@ -202,6 +207,7 @@ def libs(self):
- "hl": high-level interface
- "cxx": C++ APIs
- "fortran": Fortran APIs
- "java": Java APIs
:return: list of matching libraries
"""
@ -213,11 +219,12 @@ def libs(self):
# to the libraries needed
query2libraries = {
tuple(): ['libhdf5'],
('cxx', 'fortran', 'hl'): [
('cxx', 'fortran', 'hl', 'java'): [
'libhdf5hl_fortran',
'libhdf5_hl_cpp',
'libhdf5_hl',
'libhdf5_fortran',
'libhdf5_java',
'libhdf5',
],
('cxx', 'hl'): [
@ -247,6 +254,10 @@ def libs(self):
('fortran',): [
'libhdf5_fortran',
'libhdf5',
],
('java',): [
'libhdf5_java',
'libhdf5',
]
}
@ -258,104 +269,82 @@ def libs(self):
libraries, root=self.prefix, shared=shared, recursive=True
)
@run_before('configure')
@run_before('cmake')
def fortran_check(self):
if '+fortran' in self.spec and not self.compiler.fc:
msg = 'cannot build a Fortran variant without a Fortran compiler'
raise RuntimeError(msg)
def with_or_without_szip(self, activated):
return '--{0}-szlib'.format('with' if activated else 'without')
def cmake_args(self):
spec = self.spec
def configure_args(self):
# Always enable this option. This does not actually enable any
# features: it only *allows* the user to specify certain
# combinations of other arguments. Enabling it just skips a
# sanity check in configure, so this doesn't merit a variant.
extra_args = ['--enable-unsupported',
'--enable-symbols=yes']
args = [
self.define('ALLOW_UNSUPPORTED', True),
self.define('HDF5_ENABLE_Z_LIB_SUPPORT', True),
self.define_from_variant('HDF5_ENABLE_SZIP_SUPPORT', 'szip'),
self.define_from_variant('BUILD_SHARED_LIBS', 'shared'),
self.define_from_variant('HDF5_ENABLE_PARALLEL', 'mpi'),
self.define_from_variant('HDF5_ENABLE_THREADSAFE', 'threadsafe'),
self.define_from_variant('HDF5_BUILD_HL_LIB', 'hl'),
self.define_from_variant('HDF5_BUILD_CPP_LIB', 'cxx'),
self.define_from_variant('HDF5_BUILD_FORTRAN', 'fortran'),
self.define_from_variant('HDF5_BUILD_JAVA', 'java'),
self.define_from_variant('HDF5_BUILD_TOOLS', 'tools')
]
# Do not specify the prefix of zlib if it is in a system directory
# (see https://github.com/spack/spack/pull/21900).
zlib_prefix = self.spec['zlib'].prefix
extra_args.append('--with-zlib={0}'.format(
'yes' if is_system_path(zlib_prefix) else zlib_prefix))
if '+szip' in spec:
args.append(self.define('HDF5_ENABLE_SZIP_ENCODING', True))
extra_args += self.enable_or_disable('threadsafe')
extra_args += self.enable_or_disable('cxx')
extra_args += self.enable_or_disable('hl')
extra_args += self.enable_or_disable('fortran')
extra_args += self.enable_or_disable('java')
extra_args += self.with_or_without('szip')
api = spec.variants['api'].value
if api != 'default':
args.append(self.define('DEFAULT_API_VERSION', api))
api = self.spec.variants['api'].value
if api != 'none':
extra_args.append('--with-default-api-version=' + api)
# The variable CMAKE_POSITION_INDEPENDENT_CODE is set to True by default in
# HDF5 Cmake code; this should insure that it is off if '~pic' in spec. The
# flags that were previously set for '+pic' in the Autotools version are kept
# in case CMake doesn't set them as expected. Both the 'pic' variant and the
# CMAKE_POSITION_INDEPENDENT_CODE variable are True by default, but '~pic'
# should disable them both.
args.append(self.define_from_variant('CMAKE_POSITION_INDEPENDENT_CODE', 'pic'))
if '+pic' in spec:
# use global spack compiler flags
_flags = self.compiler.cc_pic_flag
_flags += " " + ' '.join(spec.compiler_flags['cflags'])
args.append('CFLAGS={0}'.format(_flags))
if self.spec.satisfies('@1.10:'):
if '+debug' in self.spec:
extra_args.append('--enable-build-mode=debug')
else:
extra_args.append('--enable-build-mode=production')
else:
if '+debug' in self.spec:
extra_args.append('--enable-debug=all')
else:
extra_args.append('--enable-production')
if '+cxx' in spec:
_flags = self.compiler.cxx_pic_flag
_flags += " " + ' '.join(spec.compiler_flags['cxxflags'])
args.append('CXXFLAGS={0}'.format(_flags))
# '--enable-fortran2003' no longer exists as of version 1.10.0
if '+fortran' in self.spec:
extra_args.append('--enable-fortran2003')
else:
extra_args.append('--disable-fortran2003')
if '+shared' in self.spec:
extra_args.append('--enable-shared')
else:
extra_args.append('--disable-shared')
extra_args.append('--enable-static-exec')
if '+fortran' in spec:
_flags = self.compiler.fc_pic_flag
_flags += " " + ' '.join(spec.compiler_flags['fflags'])
args.append('FCFLAGS={0}'.format(_flags))
# Fujitsu Compiler does not add Fortran runtime in rpath.
if '+fortran %fj' in self.spec:
extra_args.append('LDFLAGS=-lfj90i -lfj90f -lfjsrcinfo -lelf')
if '+fortran %fj' in spec:
args.append('LDFLAGS=-lfj90i -lfj90f -lfjsrcinfo -lelf')
if '+mpi' in self.spec:
if '+mpi' in spec:
# The HDF5 configure script warns if cxx and mpi are enabled
# together. There doesn't seem to be a real reason for this, except
# that parts of the MPI interface are not accessible via the C++
# interface. Since they are still accessible via the C interface,
# this is not actually a problem.
extra_args += ['--enable-parallel',
'CC=%s' % self.spec['mpi'].mpicc]
args.append('CC=%s' % self.spec['mpi'].mpicc)
if '+cxx' in self.spec:
extra_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
args.append('CXX=%s' % self.spec['mpi'].mpicxx)
if '+fortran' in self.spec:
extra_args.append('FC=%s' % self.spec['mpi'].mpifc)
args.append('FC=%s' % self.spec['mpi'].mpifc)
return extra_args
@run_after('configure')
def patch_postdeps(self):
if '@:1.8.14' in self.spec:
# On Ubuntu14, HDF5 1.8.12 (and maybe other versions)
# mysteriously end up with "-l -l" in the postdeps in the
# libtool script. Patch this by removing the spurious -l's.
filter_file(
r'postdeps="([^"]*)"',
lambda m: 'postdeps="%s"' % ' '.join(
arg for arg in m.group(1).split(' ') if arg != '-l'),
'libtool')
@run_after('configure')
def patch_libtool(self):
"""AOCC support for HDF5"""
if '%aocc' in self.spec:
filter_file(
r'\$wl-soname \$wl\$soname',
r'-fuse-ld=ld -Wl,-soname,\$soname',
'libtool', string=True)
return args
@run_after('install')
@on_package_attributes(run_tests=True)