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Emblmygff3 (#38515)

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* py-bcbio-gff: adding new version 0.7.0

* emblmygff3: adding new package

* emblmygff3: adding py-setuptools dep
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snehring 2023-06-22 16:50:11 -05:00 committed by GitHub
parent cbe4a48291
commit c96f93b2a3
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2 changed files with 29 additions and 0 deletions
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var/spack/repos/builtin/packages/emblmygff3/package.py Normal file
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@ -0,0 +1,28 @@
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Emblmygff3(PythonPackage):
"""
EMBLmyGFF3 converts an assembly in FASTA format along with associated
annotation in GFF3 format into the EMBL flat file format which is the
required format for submitting annotated assemblies to ENA.
"""
homepage = "https://github.com/NBISweden/EMBLmyGFF3"
url = "https://github.com/NBISweden/EMBLmyGFF3/archive/refs/tags/v2.2.tar.gz"
maintainers("snehring")
version("2.2", sha256="225b2b50da9064f779e164b2859506d7540d11fa78f7d41b5c0d94f02f7845c5")
version("2.1", sha256="64aef403bc64088eca504b69acffb3fb16ec4448cd3d6c9692b7baf276b92fd2")
depends_on("py-setuptools", type="build")
depends_on("python@3.8.0:", type=("build", "run"))
depends_on("py-biopython@1.78:", type=("build", "run"))
depends_on("py-bcbio-gff@0.6.4:", type=("build", "run"))
depends_on("py-numpy@1.22:", type=("build", "run"))

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var/spack/repos/builtin/packages/py-bcbio-gff/package.py
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@ -12,6 +12,7 @@ class PyBcbioGff(PythonPackage):
pypi = "bcbio-gff/bcbio-gff-0.6.2.tar.gz"
version("0.7.0", sha256="f7b3922ee274106f8716703f41f05a1795aa9d73e903f4e481995ed8f5f65d2d")
version("0.6.2", sha256="c682dc46a90e9fdb124ab5723797a5f71b2e3534542ceff9f6572b64b9814e68")
depends_on("py-setuptools", type="build")