Python: drop EOL versions (#33898)
This PR removes [end of life](https://endoflife.date/python) versions of Python from Spack. Specifically, this includes all versions of Python older than 3.7. See https://github.com/spack/spack/discussions/31824 for rationale. Deprecated in #32615. And #28003. For anyone using software that relies on Python 2, you have a few options: * Upgrade the software to support Python 3. The `3to2` tool may get you most of the way there, although more complex libraries may need manual tweaking. * Add Python 2 as an [external package](https://spack.readthedocs.io/en/latest/build_settings.html#external-packages). Many Python libraries do not support Python 2, but you may be able to add older versions that did once upon a time. * Use Spack 0.19. Spack 0.19 is the last release to officially support Python 3.6 and older * Create and maintain your own [custom repository](https://spack.readthedocs.io/en/latest/repositories.html). Basically, you would need a package for Python 2 and any other Python 2-specific libraries you need.
This commit is contained in:
parent
4bf964e6b3
commit
c5883fffd7
542 changed files with 315 additions and 8279 deletions
|
@ -1,11 +0,0 @@
|
||||||
diff -u -r -N e/alps/src/alps/osiris/xdrcore.C h/alps/src/alps/osiris/xdrcore.C
|
|
||||||
--- e/alps/src/alps/osiris/xdrcore.C 2020-11-04 12:59:46.000000000 +0900
|
|
||||||
+++ h/alps/src/alps/osiris/xdrcore.C 2020-12-16 11:45:16.000000000 +0900
|
|
||||||
@@ -66,6 +66,7 @@
|
|
||||||
#include <stdio.h>
|
|
||||||
#include <string.h>
|
|
||||||
#include <stdlib.h>
|
|
||||||
+#include <climits>
|
|
||||||
|
|
||||||
#include <alps/osiris/xdrcore.h>
|
|
||||||
|
|
|
@ -1,11 +0,0 @@
|
||||||
--- a/alps/config/run_test.cmake 2020-12-10 10:05:48.925076699 +0900
|
|
||||||
+++ b/alps/config/run_test.cmake 2020-12-10 11:37:18.180959480 +0900
|
|
||||||
@@ -3,7 +3,7 @@
|
|
||||||
# (See accompanying file LICENSE_1_0.txt or copy at
|
|
||||||
# http://www.boost.org/LICENSE_1_0.txt)
|
|
||||||
|
|
||||||
-find_program(cmd_path ${cmd} ${binarydir} ${dllexedir})
|
|
||||||
+find_program(cmd_path ${cmd} ${binarydir} ${dllexedir} NO_SYSTEM_ENVIRONMENT_PATH)
|
|
||||||
|
|
||||||
find_file(input_path ${input}.input ${binarydir} ${sourcedir})
|
|
||||||
if(NOT input_path)
|
|
|
@ -1,59 +0,0 @@
|
||||||
diff -u -r -N a/alps/applications/dmrg/dmrg/dmtk/system.h b/alps/applications/dmrg/dmrg/dmtk/system.h
|
|
||||||
--- a/alps/applications/dmrg/dmrg/dmtk/system.h 2020-10-20 15:38:28.000000000 +0900
|
|
||||||
+++ b/alps/applications/dmrg/dmrg/dmtk/system.h 2020-10-20 15:40:15.000000000 +0900
|
|
||||||
@@ -577,8 +577,11 @@
|
|
||||||
{
|
|
||||||
s.write((const char *)&_numsweeps, sizeof(size_t));
|
|
||||||
for(int i = 1; i <= _numsweeps; i++){
|
|
||||||
- s.write((const char *)&_sweeps(0,i), sizeof(double));
|
|
||||||
- s.write((const char *)&_sweeps(1,i), sizeof(double));
|
|
||||||
+ double x;
|
|
||||||
+ x = _sweeps(0,i);
|
|
||||||
+ s.write((const char *)&x, sizeof(double));
|
|
||||||
+ x = _sweeps(1,i);
|
|
||||||
+ s.write((const char *)&x, sizeof(double));
|
|
||||||
}
|
|
||||||
s.write((const char *)&_in_warmup, sizeof(bool));
|
|
||||||
s.write((const char *)&_sweep, sizeof(int));
|
|
||||||
diff -u -r -N a/alps/applications/dmrg/mps/framework/dmrg/mp_tensors/twositetensor.hpp b/alps/applications/dmrg/mps/framework/dmrg/mp_tensors/twositetensor.hpp
|
|
||||||
--- a/alps/applications/dmrg/mps/framework/dmrg/mp_tensors/twositetensor.hpp 2020-10-20 14:47:06.000000000 +0900
|
|
||||||
+++ b/alps/applications/dmrg/mps/framework/dmrg/mp_tensors/twositetensor.hpp 2020-10-20 14:47:53.000000000 +0900
|
|
||||||
@@ -216,8 +216,8 @@
|
|
||||||
swap(this->left_i, b.left_i);
|
|
||||||
swap(this->right_i, b.right_i);
|
|
||||||
swap(this->data_, b.data_);
|
|
||||||
- swap(this->cur_storage, b.cur_storage);
|
|
||||||
- swap(this->cur_normalization, b.cur_normalization);
|
|
||||||
+ this->swap(this->cur_storage, b.cur_storage);
|
|
||||||
+ this->swap(this->cur_normalization, b.cur_normalization);
|
|
||||||
}
|
|
||||||
|
|
||||||
template<class Matrix, class SymmGroup>
|
|
||||||
diff -u -r -N a/alps/applications/qmc/sse4/model.h b/alps/applications/qmc/sse4/model.h
|
|
||||||
--- a/alps/applications/qmc/sse4/model.h 2020-10-20 15:12:20.000000000 +0900
|
|
||||||
+++ b/alps/applications/qmc/sse4/model.h 2020-12-15 14:56:27.000000000 +0900
|
|
||||||
@@ -140,11 +140,6 @@
|
|
||||||
return diag_vertex_indices[e_index(state, utype, sites)];
|
|
||||||
}
|
|
||||||
|
|
||||||
- double max_diag_me() const
|
|
||||||
- {
|
|
||||||
- return _max_diag_me;
|
|
||||||
- }
|
|
||||||
-
|
|
||||||
double c(unsigned unit_type) const
|
|
||||||
{
|
|
||||||
return epsilon + _max_diag_me[unit_type];
|
|
||||||
diff -u -r -N a/alps/src/alps/alea/histogram.h b/alps/src/alps/alea/histogram.h
|
|
||||||
--- a/alps/src/alps/alea/histogram.h 2020-10-20 14:49:19.000000000 +0900
|
|
||||||
+++ b/alps/src/alps/alea/histogram.h 2020-12-15 14:56:59.000000000 +0900
|
|
||||||
@@ -85,9 +85,7 @@
|
|
||||||
// forward a few things from container
|
|
||||||
|
|
||||||
const_iterator begin() const { return histogram_.begin();}
|
|
||||||
- const_iterator rbegin() const { return histogram_.rbegin();}
|
|
||||||
const_iterator end() const { return histogram_.end();}
|
|
||||||
- const_iterator rend() const { return histogram_.rend();}
|
|
||||||
size_type size() const { return histogram_.size();}
|
|
||||||
value_type operator[](size_type i) const { return histogram_[i];}
|
|
||||||
value_type at(size_type i) const { return histogram_.at(i);}
|
|
|
@ -1,13 +0,0 @@
|
||||||
diff --git a/alps/src/alps/CMakeLists.txt b/alps/src/alps/CMakeLists.txt
|
|
||||||
index ae73f13..0d1ba34 100644
|
|
||||||
--- a/alps/src/alps/CMakeLists.txt
|
|
||||||
+++ b/alps/src/alps/CMakeLists.txt
|
|
||||||
@@ -93,7 +93,7 @@ if (Boost_FOUND)
|
|
||||||
set(ALPS_LINK_LIBS ${ALPS_LINK_LIBS} ${PYTHON_LIBRARY} ${PYTHON_EXTRA_LIBS})
|
|
||||||
endif(PYTHONLIBS_FOUND)
|
|
||||||
if(MPI_FOUND)
|
|
||||||
- set(ALPS_LINK_LIBS ${ALPS_LINK_LIBS} ${MPI_LIBRARIES} ${MPI_EXTRA_LIBRARY})
|
|
||||||
+ set(ALPS_LINK_LIBS ${ALPS_LINK_LIBS} ${MPI_LIBRARIES})
|
|
||||||
endif(MPI_FOUND)
|
|
||||||
target_link_libraries(alps ${ALPS_LINK_LIBS})
|
|
||||||
else (Boost_FOUND)
|
|
|
@ -1,85 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
# Refs for building from source and recipes
|
|
||||||
# https://alps.comp-phys.org/mediawiki/index.php/Building_ALPS_from_source
|
|
||||||
# https://github.com/easybuilders/easybuild-easyconfigs/tree/master/easybuild/easyconfigs/a/ALPS
|
|
||||||
# https://github.com/conda-forge/alps-feedstock/tree/master/recipe
|
|
||||||
|
|
||||||
|
|
||||||
class Alps(CMakePackage):
|
|
||||||
"""Algorithms for Physics Simulations
|
|
||||||
|
|
||||||
Tags: Condensed Matter Physics, Computational Physics
|
|
||||||
"""
|
|
||||||
|
|
||||||
homepage = "https://alps.comp-phys.org"
|
|
||||||
url = "https://alps.comp-phys.org/static/software/releases/alps-2.3.0-src.tar.gz"
|
|
||||||
|
|
||||||
version("2.3.0", sha256="e64208d1e5acdd6f569277413c4867e1fa366cf4a224570eacbf1e9939fca2d2")
|
|
||||||
|
|
||||||
# Package failed to build with boost version >= 1.64
|
|
||||||
depends_on(
|
|
||||||
"boost@:1.63.0"
|
|
||||||
"+chrono +date_time +filesystem +iostreams +mpi +numpy +program_options"
|
|
||||||
"+python +regex +serialization +system +test +thread +timer"
|
|
||||||
)
|
|
||||||
depends_on("fftw")
|
|
||||||
depends_on("hdf5 ~mpi+hl")
|
|
||||||
depends_on("lapack")
|
|
||||||
# build fails for latest python@3.7
|
|
||||||
depends_on("python@:3.6", type=("build", "link", "run"))
|
|
||||||
depends_on("py-numpy", type=("build", "run"))
|
|
||||||
depends_on("py-scipy", type=("build", "run"))
|
|
||||||
depends_on("py-matplotlib", type=("build", "run"))
|
|
||||||
|
|
||||||
# use depends_on to help with dependency resolution
|
|
||||||
depends_on("py-numpy@:1.19", when="^python@:3.6")
|
|
||||||
depends_on("py-scipy@:1.5", when="^python@:3.6")
|
|
||||||
|
|
||||||
# fix for gcc@7:
|
|
||||||
patch("alps_newgcc.patch", when="%gcc@7:")
|
|
||||||
|
|
||||||
# remove a problematic build variable
|
|
||||||
patch("mpi.patch")
|
|
||||||
|
|
||||||
# include climits to use INT_MAX
|
|
||||||
patch("alps_climit.patch")
|
|
||||||
|
|
||||||
# ctest tries to test '/usr/bin/time'
|
|
||||||
patch("alps_cmake_time.patch")
|
|
||||||
|
|
||||||
extends("python")
|
|
||||||
|
|
||||||
root_cmakelists_dir = "alps"
|
|
||||||
|
|
||||||
def cmake_args(self):
|
|
||||||
args = []
|
|
||||||
args.append("Boost_ROOT_DIR=" + self.spec["boost"].prefix)
|
|
||||||
args.append("-DCMAKE_CXX_FLAGS={0}".format(self.compiler.cxx98_flag))
|
|
||||||
return args
|
|
||||||
|
|
||||||
def _single_test(self, target, exename, dataname, opts=[]):
|
|
||||||
troot = self.prefix.tutorials
|
|
||||||
copy_tree(join_path(troot, target), target)
|
|
||||||
|
|
||||||
if target == "dmrg-01-dmrg":
|
|
||||||
test_dir = self.test_suite.current_test_data_dir
|
|
||||||
copy(join_path(test_dir, dataname), target)
|
|
||||||
|
|
||||||
self.run_test("parameter2xml", options=[dataname, "SEED=123456"], work_dir=target)
|
|
||||||
options = []
|
|
||||||
options.extend(opts)
|
|
||||||
options.extend(["--write-xml", "{0}.in.xml".format(dataname)])
|
|
||||||
self.run_test(
|
|
||||||
exename, options=options, expected=["Finished with everything."], work_dir=target
|
|
||||||
)
|
|
||||||
|
|
||||||
def test(self):
|
|
||||||
self._single_test("mc-02-susceptibilities", "spinmc", "parm2a", ["--Tmin", "10"])
|
|
||||||
self._single_test("ed-01-sparsediag", "sparsediag", "parm1a")
|
|
||||||
self._single_test("dmrg-01-dmrg", "dmrg", "spin_one_half")
|
|
|
@ -1,9 +0,0 @@
|
||||||
LATTICE="open chain lattice"
|
|
||||||
MODEL="spin"
|
|
||||||
CONSERVED_QUANTUMNUMBERS="N,Sz"
|
|
||||||
Sz_total=0
|
|
||||||
J=1
|
|
||||||
SWEEPS=4
|
|
||||||
NUMBER_EIGENVALUES=1
|
|
||||||
L=32
|
|
||||||
{MAXSTATES=100}
|
|
|
@ -20,8 +20,6 @@ class Alquimia(CMakePackage):
|
||||||
version("1.0.9", commit="2ee3bcfacc63f685864bcac2b6868b48ad235225") # tag v.1.0.9
|
version("1.0.9", commit="2ee3bcfacc63f685864bcac2b6868b48ad235225") # tag v.1.0.9
|
||||||
version("xsdk-0.6.0", commit="9a0aedd3a927d4d5e837f8fd18b74ad5a78c3821")
|
version("xsdk-0.6.0", commit="9a0aedd3a927d4d5e837f8fd18b74ad5a78c3821")
|
||||||
version("xsdk-0.5.0", commit="8397c3b00a09534c5473ff3ab21f0e32bb159380")
|
version("xsdk-0.5.0", commit="8397c3b00a09534c5473ff3ab21f0e32bb159380")
|
||||||
version("xsdk-0.4.0", commit="2edad6733106142d014bb6e6a73c2b21d5e3cf2d")
|
|
||||||
version("xsdk-0.3.0", tag="xsdk-0.3.0")
|
|
||||||
|
|
||||||
variant("shared", default=True, description="Enables the build of shared libraries")
|
variant("shared", default=True, description="Enables the build of shared libraries")
|
||||||
|
|
||||||
|
@ -31,11 +29,7 @@ class Alquimia(CMakePackage):
|
||||||
depends_on("pflotran@3.0.2", when="@1.0.9")
|
depends_on("pflotran@3.0.2", when="@1.0.9")
|
||||||
depends_on("pflotran@xsdk-0.6.0", when="@xsdk-0.6.0")
|
depends_on("pflotran@xsdk-0.6.0", when="@xsdk-0.6.0")
|
||||||
depends_on("pflotran@xsdk-0.5.0", when="@xsdk-0.5.0")
|
depends_on("pflotran@xsdk-0.5.0", when="@xsdk-0.5.0")
|
||||||
depends_on("pflotran@xsdk-0.4.0", when="@xsdk-0.4.0")
|
|
||||||
depends_on("pflotran@xsdk-0.3.0", when="@xsdk-0.3.0")
|
|
||||||
depends_on("pflotran@develop", when="@develop")
|
depends_on("pflotran@develop", when="@develop")
|
||||||
depends_on("petsc@3.10.0:3.10", when="@xsdk-0.4.0")
|
|
||||||
depends_on("petsc@3.8.0:3.8", when="@xsdk-0.3.0")
|
|
||||||
depends_on("petsc@3.10:", when="@develop")
|
depends_on("petsc@3.10:", when="@develop")
|
||||||
|
|
||||||
@when("@1.0.10")
|
@when("@1.0.10")
|
||||||
|
|
|
@ -1,25 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Ambari(PythonPackage):
|
|
||||||
"""Apache Ambari is a tool for provisioning, managing, and monitoring
|
|
||||||
Apache Hadoop clusters. Ambari consists of a set of RESTful APIs and
|
|
||||||
a browser-based management interface."""
|
|
||||||
|
|
||||||
homepage = "https://cwiki.apache.org/confluence/display/AMBARI/Ambari"
|
|
||||||
url = "https://github.com/apache/ambari/archive/release-2.7.5.tar.gz"
|
|
||||||
|
|
||||||
version("2.7.5", sha256="f8c8687b7a61b633b92f83b1c104fd75b1e13836cd8a0e0df6db7b483b23a354")
|
|
||||||
version("2.7.4", sha256="d6796c7ea913d39c93dad52b4cb74ef411a7dce4ebf68f11b12718117f2c01a4")
|
|
||||||
version("2.7.3", sha256="30fe72e60fa6b62fe032bd193ebd0cef20b65c54b57cad92f6f44daabd3771cf")
|
|
||||||
version("2.7.1", sha256="ea4eb28f377ce9d0b9b7648f2020dda4be974c6d9a22ebaafbf1bc97890e4e42")
|
|
||||||
|
|
||||||
depends_on("python@:2.7", type=("build", "run"))
|
|
||||||
depends_on("py-setuptools@:44", type="build")
|
|
||||||
depends_on("py-mock", type="test")
|
|
||||||
depends_on("py-coilmq", type=("build", "run"))
|
|
|
@ -34,7 +34,6 @@ class Amdlibm(SConsPackage):
|
||||||
variant("verbose", default=False, description="Building with verbosity")
|
variant("verbose", default=False, description="Building with verbosity")
|
||||||
|
|
||||||
# Mandatory dependencies
|
# Mandatory dependencies
|
||||||
depends_on("python@3.6.2", when="%aocc@3.2.0:", type=("build", "run"))
|
|
||||||
depends_on("python@3.6.1:", type=("build", "run"))
|
depends_on("python@3.6.1:", type=("build", "run"))
|
||||||
depends_on("scons@3.1.2:", type=("build"))
|
depends_on("scons@3.1.2:", type=("build"))
|
||||||
depends_on("mpfr", type=("link"))
|
depends_on("mpfr", type=("link"))
|
||||||
|
|
|
@ -90,19 +90,11 @@ class Aomp(Package):
|
||||||
|
|
||||||
version("3.10.0", sha256=versions_dict["3.10.0"]["aomp"])
|
version("3.10.0", sha256=versions_dict["3.10.0"]["aomp"])
|
||||||
version("3.9.0", sha256=versions_dict["3.9.0"]["aomp"])
|
version("3.9.0", sha256=versions_dict["3.9.0"]["aomp"])
|
||||||
version("3.8.0", sha256=versions_dict["3.8.0"]["aomp"])
|
|
||||||
version("3.7.0", sha256=versions_dict["3.7.0"]["aomp"])
|
|
||||||
version("3.5.0", sha256=versions_dict["3.5.0"]["aomp"])
|
|
||||||
|
|
||||||
# Cmake above 3.18 would fail the build on 3.5.0
|
# Cmake above 3.18 would fail the build on 3.5.0
|
||||||
depends_on("cmake@3:", type="build")
|
depends_on("cmake@3:", type="build")
|
||||||
depends_on("cmake@3:3.17", when="@3.5.0", type="build")
|
depends_on("cmake@3:3.17", when="@3.5.0", type="build")
|
||||||
|
|
||||||
# Python 2 is needed for 3.5.0 and 3.8.0, limit py-setuptools
|
|
||||||
# to avoid spec error
|
|
||||||
depends_on("python@2.7:2.8", when="@3.5.0:3.8.0", type="build")
|
|
||||||
depends_on("py-setuptools@:44", when="@3.5.0:3.8.0", type="build")
|
|
||||||
|
|
||||||
depends_on("python@3:", type="build", when="@3.9.0:")
|
depends_on("python@3:", type="build", when="@3.9.0:")
|
||||||
depends_on("py-setuptools", when="@3.9.0:", type="build")
|
depends_on("py-setuptools", when="@3.9.0:", type="build")
|
||||||
|
|
||||||
|
|
|
@ -22,25 +22,12 @@ class Asciidoc(AutotoolsPackage):
|
||||||
version("9.0.3", sha256="b6ef4accd7959f51b532ab4d3aaa211e15f18fd544c4c3cc3ed712f5590a50de")
|
version("9.0.3", sha256="b6ef4accd7959f51b532ab4d3aaa211e15f18fd544c4c3cc3ed712f5590a50de")
|
||||||
version("9.0.2", sha256="93fbe32d56380afee2f26389d8ebfdf33de72536449d53308120d3c20d2c1e17")
|
version("9.0.2", sha256="93fbe32d56380afee2f26389d8ebfdf33de72536449d53308120d3c20d2c1e17")
|
||||||
version("8.6.10", sha256="22d6793d4f48cefb4a6963853212a214591a591ece1bcbc56af3c67c642003ea")
|
version("8.6.10", sha256="22d6793d4f48cefb4a6963853212a214591a591ece1bcbc56af3c67c642003ea")
|
||||||
version("8.6.9", sha256="45e95bed1e341980f7de0a66fdc467090956fe55d4625bdad8057cd926e0c6c6")
|
|
||||||
|
|
||||||
depends_on("libxml2", type=("build", "run"))
|
depends_on("libxml2", type=("build", "run"))
|
||||||
depends_on("libxslt", type=("build", "run"))
|
depends_on("libxslt", type=("build", "run"))
|
||||||
depends_on("docbook-xml", type=("build", "run"))
|
depends_on("docbook-xml", type=("build", "run"))
|
||||||
depends_on("docbook-xsl", type=("build", "run"))
|
depends_on("docbook-xsl", type=("build", "run"))
|
||||||
depends_on("python@2.3.0:2.7", when="@:8.6.9", type=("build", "run"))
|
depends_on("python@3.5:", type=("build", "run"))
|
||||||
depends_on("python@3.5:", when="@9.0.2:", type=("build", "run"))
|
|
||||||
depends_on("autoconf", type="build")
|
depends_on("autoconf", type="build")
|
||||||
depends_on("automake", type="build")
|
depends_on("automake", type="build")
|
||||||
depends_on("libtool", type="build")
|
depends_on("libtool", type="build")
|
||||||
|
|
||||||
@when("@:8.6.9")
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
# Old release demands python2
|
|
||||||
mpythpath = spec["python"].command.path
|
|
||||||
exes = ["asciidoc", "a2x"]
|
|
||||||
for exe in exes:
|
|
||||||
fthfile = FileFilter(exe + ".py")
|
|
||||||
fthfile.filter("#!/usr/bin/env python", "#!" + mpythpath)
|
|
||||||
|
|
||||||
make("install")
|
|
||||||
|
|
|
@ -1,17 +0,0 @@
|
||||||
diff -Naur a/setup.py b/setup.py
|
|
||||||
--- a/setup.py 2020-02-06 15:40:26.000000000 -0600
|
|
||||||
+++ b/setup.py 2020-02-06 15:41:17.000000000 -0600
|
|
||||||
@@ -27,10 +27,12 @@
|
|
||||||
"future>=0.16.0,<=0.18.2",
|
|
||||||
"tabulate>=0.8.2,<=0.8.3",
|
|
||||||
"ipaddress>=1.0.22",
|
|
||||||
- "enum34>=1.1.6",
|
|
||||||
"PyYAML>=5.1.2",
|
|
||||||
]
|
|
||||||
|
|
||||||
+if sys.version_info < (3, 4):
|
|
||||||
+ REQUIRES.append("enum34>=1.1.6")
|
|
||||||
+
|
|
||||||
if sys.version_info[0] == 2:
|
|
||||||
REQUIRES.append("configparser>=3.5.0,<=3.8.1")
|
|
||||||
|
|
|
@ -57,23 +57,17 @@ class AwsParallelcluster(PythonPackage):
|
||||||
|
|
||||||
depends_on("py-ipaddress@1.0.22:", type=("build", "run"))
|
depends_on("py-ipaddress@1.0.22:", type=("build", "run"))
|
||||||
|
|
||||||
depends_on("py-configparser@3.5.0:3.8.1", when="^python@:2", type=("build", "run"))
|
depends_on("py-tabulate@0.8.3:0.8.10", when="@2.11: ^python@:3.9", type=("build", "run"))
|
||||||
|
|
||||||
depends_on("py-tabulate@0.8.3:0.8.10", when="@2.11: ^python@:2,3.5:3.9", type=("build", "run"))
|
|
||||||
depends_on("py-tabulate@0.8.8:0.8.10", when="@2.11: ^python@3.10:", type=("build", "run"))
|
depends_on("py-tabulate@0.8.8:0.8.10", when="@2.11: ^python@3.10:", type=("build", "run"))
|
||||||
depends_on("py-tabulate@0.8.2:0.8.3", when="@:2.8", type=("build", "run"))
|
depends_on("py-tabulate@0.8.2:0.8.3", when="@:2.8", type=("build", "run"))
|
||||||
depends_on("py-tabulate@0.8.5", when="@2.9: ^python@3.0:3.4", type=("build", "run"))
|
depends_on("py-tabulate@0.8.2:0.8.7", when="@2.9:", type=("build", "run"))
|
||||||
depends_on("py-tabulate@0.8.2:0.8.7", when="@2.9: ^python@:2,3.5:", type=("build", "run"))
|
|
||||||
|
|
||||||
depends_on("py-pyyaml@5.3.1:", when="@2.11:", type=("build", "run"))
|
depends_on("py-pyyaml@5.3.1:", when="@2.9:", type=("build", "run"))
|
||||||
depends_on("py-pyyaml@5.3.1:", when="@2.9:2.10 ^python@:2,3.5:", type=("build", "run"))
|
depends_on("py-pyyaml@5.2", when="@2.6:2.10", type=("build", "run"))
|
||||||
depends_on("py-pyyaml@5.2", when="@2.6:2.10 ^python@3.0:3.4", type=("build", "run"))
|
depends_on("py-pyyaml@5.1.2:", when="@:2.8", type=("build", "run"))
|
||||||
depends_on("py-pyyaml@5.1.2:", when="@2.6:2.8 ^python@:2,3.5:", type=("build", "run"))
|
|
||||||
depends_on("py-pyyaml@5.1.2:", when="@:2.5", type=("build", "run"))
|
|
||||||
|
|
||||||
depends_on("py-jinja2@2.11.3:", when="@2.11:", type=("build", "run"))
|
depends_on("py-jinja2@2.11.3:", when="@2.11:", type=("build", "run"))
|
||||||
depends_on("py-jinja2@2.10.1", when="@2.9: ^python@3.0:3.4", type=("build", "run"))
|
depends_on("py-jinja2@2.11.0:", when="@2.9:", type=("build", "run"))
|
||||||
depends_on("py-jinja2@2.11.0:", when="@2.9: ^python@:2,3.5:", type=("build", "run"))
|
|
||||||
|
|
||||||
depends_on("py-boto3@1.17.27:", when="@2.11:", type=("build", "run"))
|
depends_on("py-boto3@1.17.27:", when="@2.11:", type=("build", "run"))
|
||||||
depends_on("py-boto3@1.16.14:", when="@2.10:", type=("build", "run"))
|
depends_on("py-boto3@1.16.14:", when="@2.10:", type=("build", "run"))
|
||||||
|
@ -82,11 +76,6 @@ class AwsParallelcluster(PythonPackage):
|
||||||
|
|
||||||
depends_on("py-setuptools", type=("build", "run"))
|
depends_on("py-setuptools", type=("build", "run"))
|
||||||
|
|
||||||
depends_on("py-enum34@1.1.6:", when="^python@:3.3", type=("build", "run"))
|
|
||||||
|
|
||||||
# https://github.com/aws/aws-parallelcluster/pull/1633
|
|
||||||
patch("enum34.patch", when="@:2.5.1")
|
|
||||||
|
|
||||||
@run_after("install")
|
@run_after("install")
|
||||||
@on_package_attributes(run_tests=True)
|
@on_package_attributes(run_tests=True)
|
||||||
def install_test(self):
|
def install_test(self):
|
||||||
|
|
|
@ -22,10 +22,7 @@ class Awscli(PythonPackage):
|
||||||
depends_on("py-docutils@0.10:0.15", type=("build", "run"))
|
depends_on("py-docutils@0.10:0.15", type=("build", "run"))
|
||||||
depends_on("py-rsa@3.1.2:3.5.0", type=("build", "run"))
|
depends_on("py-rsa@3.1.2:3.5.0", type=("build", "run"))
|
||||||
depends_on("py-s3transfer@0.2.0:0.2", type=("build", "run"))
|
depends_on("py-s3transfer@0.2.0:0.2", type=("build", "run"))
|
||||||
depends_on("py-argparse@1.1:", when="^python@:2.6,3.0:3.1", type=("build", "run"))
|
depends_on("py-pyyaml@3.10:5.2", type=("build", "run"))
|
||||||
depends_on("py-pyyaml@3.10:3.13", when="^python@:2.6,3.0:3.3", type=("build", "run"))
|
depends_on("py-colorama@0.2.5:0.4.1", type=("build", "run"))
|
||||||
depends_on("py-pyyaml@3.10:5.2", when="^python@3.4:", type=("build", "run"))
|
|
||||||
depends_on("py-colorama@0.2.5:0.3.9", when="^python@:2.6,3.0:3.3", type=("build", "run"))
|
|
||||||
depends_on("py-colorama@0.2.5:0.4.1", when="^python@3.4:", type=("build", "run"))
|
|
||||||
depends_on("py-nose", type="test")
|
depends_on("py-nose", type="test")
|
||||||
depends_on("py-mock@1.3.0:", type="test")
|
depends_on("py-mock@1.3.0:", type="test")
|
||||||
|
|
|
@ -37,7 +37,6 @@ class Berkeleygw(MakefilePackage):
|
||||||
|
|
||||||
variant("mpi", default=True, description="Builds with MPI support")
|
variant("mpi", default=True, description="Builds with MPI support")
|
||||||
variant("elpa", default=True, description="Build with ELPA support")
|
variant("elpa", default=True, description="Build with ELPA support")
|
||||||
variant("python", default=False, description="Build with Python support")
|
|
||||||
variant("openmp", default=True, description="Build with OpenMP support")
|
variant("openmp", default=True, description="Build with OpenMP support")
|
||||||
variant("scalapack", default=True, description="Build with ScaLAPACK support")
|
variant("scalapack", default=True, description="Build with ScaLAPACK support")
|
||||||
variant("hdf5", default=True, description="Builds with HDF5 support")
|
variant("hdf5", default=True, description="Builds with HDF5 support")
|
||||||
|
@ -56,11 +55,6 @@ class Berkeleygw(MakefilePackage):
|
||||||
depends_on("fftw-api@3+openmp", when="+openmp")
|
depends_on("fftw-api@3+openmp", when="+openmp")
|
||||||
depends_on("fftw-api@3~openmp", when="~openmp")
|
depends_on("fftw-api@3~openmp", when="~openmp")
|
||||||
|
|
||||||
depends_on("python@:2", type=("build", "run"), when="+python")
|
|
||||||
depends_on("py-numpy@:1.16", type=("build", "run"), when="+python")
|
|
||||||
depends_on("py-setuptools@:44", type=("build", "run"), when="+python")
|
|
||||||
depends_on("py-h5py@:2", type=("build", "run"), when="+hdf5+python")
|
|
||||||
|
|
||||||
depends_on("perl", type="test")
|
depends_on("perl", type="test")
|
||||||
|
|
||||||
conflicts(
|
conflicts(
|
||||||
|
|
|
@ -17,7 +17,6 @@ class BigdftAtlab(AutotoolsPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
variant("openmp", default=True, description="Enable OpenMP support")
|
variant("openmp", default=True, description="Enable OpenMP support")
|
||||||
|
@ -26,7 +25,7 @@ class BigdftAtlab(AutotoolsPackage):
|
||||||
depends_on("mpi", when="+mpi")
|
depends_on("mpi", when="+mpi")
|
||||||
depends_on("openbabel", when="+openbabel")
|
depends_on("openbabel", when="+openbabel")
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
||||||
build_directory = "atlab"
|
build_directory = "atlab"
|
||||||
|
|
|
@ -18,9 +18,6 @@ class BigdftChess(AutotoolsPackage, CudaPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
variant("openmp", default=True, description="Enable OpenMP support")
|
variant("openmp", default=True, description="Enable OpenMP support")
|
||||||
|
@ -28,9 +25,7 @@ class BigdftChess(AutotoolsPackage, CudaPackage):
|
||||||
variant("ntpoly", default=False, description="Option to use NTPoly")
|
variant("ntpoly", default=False, description="Option to use NTPoly")
|
||||||
# variant('minpack', default=False, description='Give the link-line for MINPACK')
|
# variant('minpack', default=False, description='Give the link-line for MINPACK')
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("build", "run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("build", "run"))
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@develop")
|
|
||||||
|
|
||||||
depends_on("blas")
|
depends_on("blas")
|
||||||
depends_on("lapack")
|
depends_on("lapack")
|
||||||
|
@ -40,9 +35,8 @@ class BigdftChess(AutotoolsPackage, CudaPackage):
|
||||||
depends_on("ntpoly", when="+ntpoly")
|
depends_on("ntpoly", when="+ntpoly")
|
||||||
# depends_on('netlib-minpack', when='+minpack')
|
# depends_on('netlib-minpack', when='+minpack')
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
for vers in ["1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
|
||||||
depends_on("bigdft-atlab@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-atlab@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
||||||
build_directory = "chess"
|
build_directory = "chess"
|
||||||
|
@ -93,8 +87,7 @@ def configure_args(self):
|
||||||
else:
|
else:
|
||||||
args.append("--without-openmp")
|
args.append("--without-openmp")
|
||||||
|
|
||||||
if spec.satisfies("@1.8.3:") or spec.satisfies("@develop"):
|
args.append("--with-atlab-libs=%s" % spec["bigdft-atlab"].prefix.lib)
|
||||||
args.append("--with-atlab-libs=%s" % spec["bigdft-atlab"].prefix.lib)
|
|
||||||
|
|
||||||
if "+cuda" in spec:
|
if "+cuda" in spec:
|
||||||
args.append("--enable-cuda-gpu")
|
args.append("--enable-cuda-gpu")
|
||||||
|
|
|
@ -18,18 +18,13 @@ class BigdftCore(AutotoolsPackage, CudaPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
variant("openmp", default=True, description="Enable OpenMP support")
|
variant("openmp", default=True, description="Enable OpenMP support")
|
||||||
variant("scalapack", default=True, description="Enable SCALAPACK support")
|
variant("scalapack", default=True, description="Enable SCALAPACK support")
|
||||||
variant("openbabel", default=False, description="Enable detection of openbabel compilation")
|
variant("openbabel", default=False, description="Enable detection of openbabel compilation")
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("build", "run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("build", "run"))
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@develop")
|
|
||||||
|
|
||||||
depends_on("blas")
|
depends_on("blas")
|
||||||
depends_on("lapack")
|
depends_on("lapack")
|
||||||
|
@ -42,7 +37,7 @@ class BigdftCore(AutotoolsPackage, CudaPackage):
|
||||||
depends_on("libxc@:4.3.4", when="@1.9.2:")
|
depends_on("libxc@:4.3.4", when="@1.9.2:")
|
||||||
depends_on("libxc@:4.3.4", when="@develop")
|
depends_on("libxc@:4.3.4", when="@develop")
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-chess@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-chess@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-psolver@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-psolver@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
|
@ -21,16 +21,11 @@ class BigdftFutile(AutotoolsPackage, CudaPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
variant("openmp", default=True, description="Enable OpenMP support")
|
variant("openmp", default=True, description="Enable OpenMP support")
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("build", "run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("build", "run"))
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@develop")
|
|
||||||
|
|
||||||
depends_on("blas")
|
depends_on("blas")
|
||||||
depends_on("lapack")
|
depends_on("lapack")
|
||||||
|
|
|
@ -1,222 +0,0 @@
|
||||||
--- a/libABINIT/src/libpaw/m_libpaw_mpi.F90
|
|
||||||
+++ b/libABINIT/src/libpaw/m_libpaw_mpi.F90
|
|
||||||
@@ -54,6 +54,24 @@
|
|
||||||
integer,public,parameter :: xpaw_mpi_comm_null = 0
|
|
||||||
#endif
|
|
||||||
|
|
||||||
+ type xpaw_mpi_attr
|
|
||||||
+ integer :: attr_data
|
|
||||||
+ end type
|
|
||||||
+
|
|
||||||
+ interface xpaw_mpi_attr
|
|
||||||
+ module procedure new_xpaw_mpi_attr
|
|
||||||
+ end interface
|
|
||||||
+
|
|
||||||
+ interface mod
|
|
||||||
+ module procedure mod_xpaw_mpi_attr
|
|
||||||
+ end interface
|
|
||||||
+
|
|
||||||
+#ifdef HAVE_MPI
|
|
||||||
+ type(xpaw_mpi_attr),public,parameter :: xpaw_mpi_tag_ub = xpaw_mpi_attr(MPI_TAG_UB)
|
|
||||||
+#else
|
|
||||||
+ integer,public,parameter :: xpaw_mpi_tag_ub = 1
|
|
||||||
+#endif
|
|
||||||
+
|
|
||||||
!----------------------------------------------------------------------
|
|
||||||
!MPI public procedures.
|
|
||||||
|
|
||||||
@@ -180,6 +198,32 @@
|
|
||||||
CONTAINS !===========================================================
|
|
||||||
!!***
|
|
||||||
|
|
||||||
+function new_xpaw_mpi_attr(key_val)
|
|
||||||
+ type(xpaw_mpi_attr) :: new_xpaw_mpi_attr
|
|
||||||
+ integer, intent(in) :: key_val
|
|
||||||
+!Local variables-------------------
|
|
||||||
+ integer :: mpierr
|
|
||||||
+#ifdef HAVE_MPI
|
|
||||||
+ integer :: attribute_val
|
|
||||||
+ logical :: lflag
|
|
||||||
+#endif
|
|
||||||
+
|
|
||||||
+ ! Deprecated in MPI2 but not all MPI2 implementations provide MPI_Comm_get_attr !
|
|
||||||
+ call MPI_ATTR_GET(xpaw_mpi_world, key_val, attribute_val, lflag, mpierr)
|
|
||||||
+ !call MPI_Comm_get_attr(xpaw_mpi_world, key_val, attribute_val, lflag, mpierr)
|
|
||||||
+
|
|
||||||
+ if (lflag) new_xpaw_mpi_attr%attr_data = attribute_val
|
|
||||||
+end function
|
|
||||||
+
|
|
||||||
+
|
|
||||||
+function mod_xpaw_mpi_attr(a, p)
|
|
||||||
+ integer :: mod_xpaw_mpi_attr
|
|
||||||
+ integer, intent(in) :: a
|
|
||||||
+ type(xpaw_mpi_attr), intent(in) :: p
|
|
||||||
+
|
|
||||||
+ mod_xpaw_mpi_attr = mod(a, p%attr_data)
|
|
||||||
+end function
|
|
||||||
+
|
|
||||||
!!****f* m_libpaw_mpi/xpaw_mpi_abort
|
|
||||||
!! NAME
|
|
||||||
!! xpaw_mpi_abort
|
|
||||||
@@ -2297,7 +2341,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_RECV(xval,n1,MPI_INTEGER,source,my_tag,spaceComm,MPI_STATUS_IGNORE,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2358,7 +2402,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_RECV(xval,n1,MPI_DOUBLE_PRECISION,source,my_tag,spaceComm,MPI_STATUS_IGNORE,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2419,7 +2463,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1) ; n2=size(xval,dim=2)
|
|
||||||
- my_tag=MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag=MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_RECV(xval,n1*n2,MPI_DOUBLE_PRECISION,source,my_tag,spaceComm,MPI_STATUS_IGNORE,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2480,7 +2524,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1) ; n2=size(xval,dim=2) ; n3=size(xval,dim=3)
|
|
||||||
- my_tag=MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag=MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_RECV(xval,n1*n2*n3,MPI_DOUBLE_PRECISION,source,my_tag,spaceComm,MPI_STATUS_IGNORE,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2541,7 +2585,7 @@
|
|
||||||
ierr=0
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
- my_tag=MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag=MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
n1=size(xval)
|
|
||||||
call MPI_IRECV(xval,n1,MPI_INTEGER,source,my_tag,spaceComm,request,ier)
|
|
||||||
ierr=ier
|
|
||||||
@@ -2604,7 +2648,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag=MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag=MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_IRECV(xval,n1,MPI_DOUBLE_PRECISION,source,my_tag,spaceComm,request,ier)
|
|
||||||
ierr=ier
|
|
||||||
end if
|
|
||||||
@@ -2666,7 +2710,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1);n2=size(xval,dim=2)
|
|
||||||
- my_tag=MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag=MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_IRECV(xval,n1*n2,MPI_DOUBLE_PRECISION,source,my_tag,spaceComm,request,ier)
|
|
||||||
ierr=ier
|
|
||||||
end if
|
|
||||||
@@ -2727,7 +2771,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_SEND(xval,n1,MPI_INTEGER,dest,my_tag,spaceComm,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2785,7 +2829,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_SEND(xval,n1,MPI_DOUBLE_PRECISION,dest,my_tag,spaceComm,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2843,7 +2887,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1) ; n2=size(xval,dim=2)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_SEND(xval,n1*n2,MPI_DOUBLE_PRECISION,dest,my_tag,spaceComm,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2901,7 +2945,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1) ; n2=size(xval,dim=2) ; n3=size(xval,dim=3)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_SEND(xval,n1*n2*n3,MPI_DOUBLE_PRECISION,dest,my_tag,spaceComm,ier)
|
|
||||||
end if
|
|
||||||
#endif
|
|
||||||
@@ -2961,7 +3005,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_ISEND(xval,n1,MPI_INTEGER,dest,my_tag,spaceComm,request,ier)
|
|
||||||
ierr=ier
|
|
||||||
end if
|
|
||||||
@@ -3020,7 +3064,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_ISEND(xval,n1,MPI_DOUBLE_PRECISION,dest,my_tag,spaceComm,request,ier)
|
|
||||||
ierr=ier
|
|
||||||
end if
|
|
||||||
@@ -3079,7 +3123,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (spaceComm /= xpaw_mpi_comm_self .and. spaceComm /= xpaw_mpi_comm_null) then
|
|
||||||
n1=size(xval,dim=1) ; n1=size(xval,dim=2)
|
|
||||||
- my_tag = MOD(tag,MPI_TAG_UB)
|
|
||||||
+ my_tag = MOD(tag,xpaw_mpi_tag_ub)
|
|
||||||
call MPI_ISEND(xval,n1*n2,MPI_DOUBLE_PRECISION,dest,my_tag,spaceComm,request,ier)
|
|
||||||
ierr=ier
|
|
||||||
end if
|
|
||||||
@@ -3145,7 +3189,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (sender==recever.or.spaceComm==xpaw_mpi_comm_null.or.(n1==0)) return
|
|
||||||
call MPI_COMM_RANK(spaceComm,me,ier)
|
|
||||||
- tag = MOD(n1,MPI_TAG_UB)
|
|
||||||
+ tag = MOD(n1,xpaw_mpi_tag_ub)
|
|
||||||
if (recever==me) then
|
|
||||||
call MPI_RECV(vrecv,n1,MPI_INTEGER,sender,tag,spaceComm,status,ier)
|
|
||||||
end if
|
|
||||||
@@ -3212,7 +3256,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (sender==recever.or.spaceComm==xpaw_mpi_comm_null.or.(n1==0)) return
|
|
||||||
call MPI_COMM_RANK(spaceComm,me,ier)
|
|
||||||
- tag = MOD(n1,MPI_TAG_UB)
|
|
||||||
+ tag = MOD(n1,xpaw_mpi_tag_ub)
|
|
||||||
if (recever==me) then
|
|
||||||
call MPI_RECV(vrecv,n1,MPI_DOUBLE_PRECISION,sender,tag,spaceComm,status,ier)
|
|
||||||
end if
|
|
||||||
@@ -3279,7 +3323,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (sender==recever.or.spaceComm==xpaw_mpi_comm_null.or.(nt==0)) return
|
|
||||||
call MPI_COMM_RANK(spaceComm,me,ier)
|
|
||||||
- tag=MOD(nt,MPI_TAG_UB)
|
|
||||||
+ tag=MOD(nt,xpaw_mpi_tag_ub)
|
|
||||||
if (recever==me) then
|
|
||||||
call MPI_RECV(vrecv,nt,MPI_DOUBLE_PRECISION,sender,tag,spaceComm,status,ier)
|
|
||||||
end if
|
|
||||||
@@ -3346,7 +3390,7 @@
|
|
||||||
#if defined HAVE_MPI
|
|
||||||
if (sender==recever.or.spaceComm==xpaw_mpi_comm_null.or.(nt==0)) return
|
|
||||||
call MPI_COMM_RANK(spaceComm,me,ier)
|
|
||||||
- tag=MOD(nt,MPI_TAG_UB)
|
|
||||||
+ tag=MOD(nt,xpaw_mpi_tag_ub)
|
|
||||||
if (recever==me) then
|
|
||||||
call MPI_RECV(vrecv,nt,MPI_DOUBLE_PRECISION,sender,tag,spaceComm,status,ier)
|
|
||||||
end if
|
|
|
@ -20,36 +20,25 @@ class BigdftLibabinit(AutotoolsPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("build", "run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("build", "run"))
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@develop")
|
|
||||||
|
|
||||||
depends_on("mpi", when="+mpi")
|
depends_on("mpi", when="+mpi")
|
||||||
depends_on("libxc@:2.2.2", when="@:1.9.1")
|
depends_on("libxc@:2.2.2", when="@:1.9.1")
|
||||||
depends_on("libxc@:4.3.4", when="@1.9.1:")
|
depends_on("libxc@:4.3.4", when="@1.9.1:")
|
||||||
depends_on("libxc@:4.3.4", when="@develop")
|
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
||||||
patch("m_libpaw_mpi.F90.patch", when="@:1.8.2")
|
|
||||||
|
|
||||||
build_directory = "libABINIT"
|
build_directory = "libABINIT"
|
||||||
|
|
||||||
def autoreconf(self, spec, prefix):
|
def autoreconf(self, spec, prefix):
|
||||||
autoreconf = which("autoreconf")
|
autoreconf = which("autoreconf")
|
||||||
|
|
||||||
with working_dir(self.build_directory):
|
with working_dir(self.build_directory):
|
||||||
if spec.satisfies("@:1.8.2"):
|
autoreconf("-fi")
|
||||||
autoreconf("-i")
|
|
||||||
else:
|
|
||||||
autoreconf("-fi")
|
|
||||||
|
|
||||||
def configure_args(self):
|
def configure_args(self):
|
||||||
spec = self.spec
|
spec = self.spec
|
||||||
|
|
|
@ -19,17 +19,12 @@ class BigdftPsolver(AutotoolsPackage, CudaPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
variant("openmp", default=True, description="Enable OpenMP support")
|
variant("openmp", default=True, description="Enable OpenMP support")
|
||||||
variant("scalapack", default=True, description="Enable SCALAPACK support")
|
variant("scalapack", default=True, description="Enable SCALAPACK support")
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("build", "run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("build", "run"))
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@develop")
|
|
||||||
|
|
||||||
depends_on("blas")
|
depends_on("blas")
|
||||||
depends_on("lapack")
|
depends_on("lapack")
|
||||||
|
@ -37,9 +32,8 @@ class BigdftPsolver(AutotoolsPackage, CudaPackage):
|
||||||
depends_on("mpi", when="+mpi")
|
depends_on("mpi", when="+mpi")
|
||||||
depends_on("scalapack", when="+scalapack")
|
depends_on("scalapack", when="+scalapack")
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
for vers in ["1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
|
||||||
depends_on("bigdft-atlab@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-atlab@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
||||||
build_directory = "psolver"
|
build_directory = "psolver"
|
||||||
|
@ -92,8 +86,7 @@ def configure_args(self):
|
||||||
else:
|
else:
|
||||||
args.append("--without-openmp")
|
args.append("--without-openmp")
|
||||||
|
|
||||||
if spec.satisfies("@1.8.3:") or spec.satisfies("@develop"):
|
args.append("--with-atlab-libs=%s" % spec["bigdft-atlab"].prefix.lib)
|
||||||
args.append("--with-atlab-libs=%s" % spec["bigdft-atlab"].prefix.lib)
|
|
||||||
|
|
||||||
if "+cuda" in spec:
|
if "+cuda" in spec:
|
||||||
args.append("--enable-cuda-gpu")
|
args.append("--enable-cuda-gpu")
|
||||||
|
|
|
@ -18,17 +18,12 @@ class BigdftSpred(AutotoolsPackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
variant("mpi", default=True, description="Enable MPI support")
|
variant("mpi", default=True, description="Enable MPI support")
|
||||||
variant("openmp", default=True, description="Enable OpenMP support")
|
variant("openmp", default=True, description="Enable OpenMP support")
|
||||||
variant("scalapack", default=True, description="Enable SCALAPACK support")
|
variant("scalapack", default=True, description="Enable SCALAPACK support")
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("build", "run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("build", "run"))
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("build", "run"), when="@develop")
|
|
||||||
|
|
||||||
depends_on("blas")
|
depends_on("blas")
|
||||||
depends_on("lapack")
|
depends_on("lapack")
|
||||||
|
@ -36,7 +31,7 @@ class BigdftSpred(AutotoolsPackage):
|
||||||
depends_on("mpi", when="+mpi")
|
depends_on("mpi", when="+mpi")
|
||||||
depends_on("scalapack", when="+scalapack")
|
depends_on("scalapack", when="+scalapack")
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-psolver@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-psolver@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-core@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-core@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
|
@ -18,22 +18,15 @@ class BigdftSuite(BundlePackage):
|
||||||
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
version("1.9.2", sha256="dc9e49b68f122a9886fa0ef09970f62e7ba21bb9ab1b86be9b7d7e22ed8fbe0f")
|
||||||
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
version("1.9.1", sha256="3c334da26d2a201b572579fc1a7f8caad1cbf971e848a3e10d83bc4dc8c82e41")
|
||||||
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
version("1.9.0", sha256="4500e505f5a29d213f678a91d00a10fef9dc00860ea4b3edf9280f33ed0d1ac8")
|
||||||
version("1.8.3", sha256="f112bb08833da4d11dd0f14f7ab10d740b62bc924806d77c985eb04ae0629909")
|
|
||||||
version("1.8.2", sha256="042e5a3b478b1a4c050c450a9b1be7bcf8e13eacbce4759b7f2d79268b298d61")
|
|
||||||
version("1.8.1", sha256="e09ff0ba381f6ffbe6a3c0cb71db5b73117874beb41f22a982a7e5ba32d018b3")
|
|
||||||
|
|
||||||
depends_on("python@:2.8", type=("run"), when="@:1.8.3")
|
depends_on("python@3.0:", type=("run"))
|
||||||
depends_on("python@3.0:", type=("run"), when="@1.9.0:")
|
|
||||||
depends_on("python@3.0:", type=("run"), when="@develop")
|
|
||||||
|
|
||||||
for vers in ["1.8.1", "1.8.2", "1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
||||||
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-futile@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-psolver@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-psolver@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-libabinit@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-libabinit@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-chess@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-chess@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-core@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-core@{0}".format(vers), when="@{0}".format(vers))
|
||||||
depends_on("bigdft-spred@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-spred@{0}".format(vers), when="@{0}".format(vers))
|
||||||
for vers in ["1.8.3", "1.9.0", "1.9.1", "1.9.2", "develop"]:
|
|
||||||
depends_on("bigdft-atlab@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("bigdft-atlab@{0}".format(vers), when="@{0}".format(vers))
|
||||||
for vers in ["1.9.0", "1.9.1", "1.9.2", "develop"]:
|
|
||||||
depends_on("py-bigdft@{0}".format(vers), when="@{0}".format(vers))
|
depends_on("py-bigdft@{0}".format(vers), when="@{0}".format(vers))
|
||||||
|
|
|
@ -1,59 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
import os
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class BlasrLibcpp(Package):
|
|
||||||
"""Blasr_libcpp is a library used by blasr
|
|
||||||
and other executables such as samtoh5,
|
|
||||||
loadPulses for analyzing PacBio sequences."""
|
|
||||||
|
|
||||||
homepage = "https://github.com/PacificBiosciences/blasr_libcpp"
|
|
||||||
url = "https://github.com/PacificBiosciences/blasr_libcpp/archive/5.3.1.tar.gz"
|
|
||||||
|
|
||||||
maintainers = ["robqiao"]
|
|
||||||
|
|
||||||
version("5.3.1", sha256="45a673255bfe7e29ed1f5bdb6410aa45cb6b907400d038c3da9daf1058b09156")
|
|
||||||
|
|
||||||
depends_on("pbbam")
|
|
||||||
depends_on("hdf5+cxx@1.8.12:1.8")
|
|
||||||
# maximum version is 1.8.20 currently. There doesn't appear to be a
|
|
||||||
# major version 1.9 and the 1.10.1 version doesn't build correctly.
|
|
||||||
# https://github.com/PacificBiosciences/blasr/issues/355
|
|
||||||
|
|
||||||
depends_on("python@2.7:2.8", type="build")
|
|
||||||
|
|
||||||
@run_before("install")
|
|
||||||
def configure(self, spec, prefix):
|
|
||||||
configure_args = [
|
|
||||||
"PBBAM_INC={0}".format(self.spec["pbbam"].prefix.include),
|
|
||||||
"PBBAM_LIB={0}".format(self.spec["pbbam"].prefix.lib),
|
|
||||||
"HDF5_INC={0}".format(self.spec["hdf5"].prefix.include),
|
|
||||||
"HDF5_LIB={0}".format(self.spec["hdf5"].prefix.lib),
|
|
||||||
]
|
|
||||||
python("configure.py", *configure_args)
|
|
||||||
|
|
||||||
@run_before("install")
|
|
||||||
def build(self, spec, prefix):
|
|
||||||
os.environ["CPLUS_INCLUDE_PATH"] = self.stage.source_path
|
|
||||||
make()
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
install_tree("alignment", prefix.alignment)
|
|
||||||
install_tree("hdf", prefix.hdf)
|
|
||||||
install_tree("pbdata", prefix.pbdata)
|
|
||||||
|
|
||||||
def setup_dependent_build_environment(self, env, dependent_spec):
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec.prefix.hdf)
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec.prefix.alignment)
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec.prefix.pbdata)
|
|
||||||
|
|
||||||
def setup_run_environment(self, env):
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec["blasr-libcpp"].prefix.pbdata)
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec["blasr-libcpp"].prefix.alignment)
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec["blasr-libcpp"].prefix.hdf)
|
|
|
@ -1,78 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
import os
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
from spack.pkg.builtin.boost import Boost
|
|
||||||
|
|
||||||
|
|
||||||
class Blasr(Package):
|
|
||||||
"""The PacBio long read aligner."""
|
|
||||||
|
|
||||||
homepage = "https://github.com/PacificBiosciences/blasr/wiki"
|
|
||||||
url = "https://github.com/PacificBiosciences/blasr/archive/5.3.1.tar.gz"
|
|
||||||
|
|
||||||
version("5.3.1", sha256="ff7da5a03096294572e6c64340354da5c5ee1c86c277e7b899f2c170c1ac4049")
|
|
||||||
|
|
||||||
depends_on("ncurses")
|
|
||||||
depends_on("hdf5+cxx@1.8.12:1.8")
|
|
||||||
depends_on("htslib")
|
|
||||||
depends_on("zlib")
|
|
||||||
|
|
||||||
# TODO: replace this with an explicit list of components of Boost,
|
|
||||||
# for instance depends_on('boost +filesystem')
|
|
||||||
# See https://github.com/spack/spack/pull/22303 for reference
|
|
||||||
depends_on(Boost.with_default_variants)
|
|
||||||
depends_on("pbbam")
|
|
||||||
depends_on("blasr-libcpp")
|
|
||||||
depends_on("python", type="build")
|
|
||||||
|
|
||||||
def setup_build_environment(self, env):
|
|
||||||
env.prepend_path("CPATH", self.spec["blasr-libcpp"].prefix)
|
|
||||||
env.prepend_path("CPATH", self.spec["blasr-libcpp"].prefix.pbdata)
|
|
||||||
env.prepend_path("CPATH", self.spec["blasr-libcpp"].prefix.alignment)
|
|
||||||
env.prepend_path("CPATH", self.spec["blasr-libcpp"].prefix.hdf)
|
|
||||||
|
|
||||||
# hdf has +mpi by default, so handle that possibility
|
|
||||||
if "+mpi" in self.spec["hdf5"]:
|
|
||||||
env.set("CC", self.spec["mpi"].mpicc)
|
|
||||||
env.set("CXX", self.spec["mpi"].mpicxx)
|
|
||||||
|
|
||||||
def setup_run_environment(self, env):
|
|
||||||
env.prepend_path("PATH", self.spec.prefix.utils)
|
|
||||||
|
|
||||||
@run_before("install")
|
|
||||||
def configure(self, spec, prefix):
|
|
||||||
configure_args = [
|
|
||||||
"LIBPBDATA_INC={0}".format(self.spec["blasr-libcpp"].prefix),
|
|
||||||
"LIBPBDATA_LIB={0}".format(self.spec["blasr-libcpp"].prefix.pbdata),
|
|
||||||
"LIBBLASR_LIB={0}".format(self.spec["blasr-libcpp"].prefix.alignment),
|
|
||||||
"LIBBLASR_INC={0}".format(self.spec["blasr-libcpp"].prefix),
|
|
||||||
"LIBPBIHDF_INC={0}".format(self.spec["blasr-libcpp"].prefix),
|
|
||||||
"LIBPBIHDF_LIB={0}".format(self.spec["blasr-libcpp"].prefix.hdf),
|
|
||||||
"HDF5_INC={0}".format(self.spec["hdf5"].prefix.include),
|
|
||||||
"HDF5_LIB={0}".format(self.spec["hdf5"].prefix.lib),
|
|
||||||
"--shared",
|
|
||||||
]
|
|
||||||
python("configure.py", *configure_args)
|
|
||||||
|
|
||||||
@run_before("install")
|
|
||||||
def build(self, spec, prefix):
|
|
||||||
os.environ["CPLUS_INCLUDE_PATH"] = join_path(self.stage.source_path, "include")
|
|
||||||
make()
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
mkdir(prefix.utils)
|
|
||||||
mkdir(prefix.bin)
|
|
||||||
install("blasr", prefix.bin.blasr)
|
|
||||||
install("utils/loadPulses", prefix.utils)
|
|
||||||
install("utils/pls2fasta", prefix.utils)
|
|
||||||
install("utils/samFilter", prefix.utils)
|
|
||||||
install("utils/samtoh5", prefix.utils)
|
|
||||||
install("utils/samtom4", prefix.utils)
|
|
||||||
install("utils/sawriter", prefix.utils)
|
|
||||||
install("utils/sdpMatcher", prefix.utils)
|
|
||||||
install("utils/toAfg", prefix.utils)
|
|
|
@ -13,11 +13,8 @@ class Blitz(AutotoolsPackage):
|
||||||
url = "https://github.com/blitzpp/blitz/archive/1.0.2.tar.gz"
|
url = "https://github.com/blitzpp/blitz/archive/1.0.2.tar.gz"
|
||||||
|
|
||||||
version("1.0.2", sha256="500db9c3b2617e1f03d0e548977aec10d36811ba1c43bb5ef250c0e3853ae1c2")
|
version("1.0.2", sha256="500db9c3b2617e1f03d0e548977aec10d36811ba1c43bb5ef250c0e3853ae1c2")
|
||||||
version("1.0.1", sha256="b62fc3f07b64b264307b01fec5e4f2793e09a68dcb5378984aedbc2e4b3adcef")
|
|
||||||
version("1.0.0", sha256="79c06ea9a0585ba0e290c8140300e3ad19491c45c1d90feb52819abc3b58a0c1")
|
|
||||||
|
|
||||||
depends_on("python@:2.7", type="build", when="@:1.0.1")
|
depends_on("python@3:", type="build")
|
||||||
depends_on("python@3:", type="build", when="@1.0.2:")
|
|
||||||
|
|
||||||
build_targets = ["lib"]
|
build_targets = ["lib"]
|
||||||
|
|
||||||
|
|
|
@ -45,8 +45,6 @@ class Cantera(SConsPackage):
|
||||||
depends_on("py-numpy", when="+python", type=("build", "run"))
|
depends_on("py-numpy", when="+python", type=("build", "run"))
|
||||||
depends_on("py-scipy", when="+python", type=("build", "run"))
|
depends_on("py-scipy", when="+python", type=("build", "run"))
|
||||||
depends_on("py-3to2", when="+python", type=("build", "run"))
|
depends_on("py-3to2", when="+python", type=("build", "run"))
|
||||||
depends_on("py-unittest2", when="+python^python@2.6.0:2.6", type=("build", "run"))
|
|
||||||
depends_on("py-unittest2py3k", when="+python^python@3.1.0:3.1", type=("build", "run"))
|
|
||||||
|
|
||||||
# Matlab toolbox dependencies
|
# Matlab toolbox dependencies
|
||||||
extends("matlab", when="+matlab")
|
extends("matlab", when="+matlab")
|
||||||
|
|
|
@ -21,26 +21,13 @@ class Catalyst(CMakePackage):
|
||||||
"""
|
"""
|
||||||
|
|
||||||
homepage = "http://www.paraview.org"
|
homepage = "http://www.paraview.org"
|
||||||
url = "https://www.paraview.org/files/v5.5/ParaView-v5.5.2.tar.gz"
|
url = "https://www.paraview.org/files/v5.6/ParaView-v5.6.0.tar.xz"
|
||||||
_urlfmt_gz = "https://www.paraview.org/files/v{0}/ParaView-v{1}{2}.tar.gz"
|
|
||||||
_urlfmt_xz = "https://www.paraview.org/files/v{0}/ParaView-v{1}{2}.tar.xz"
|
|
||||||
|
|
||||||
maintainers = ["chuckatkins", "danlipsa"]
|
maintainers = ["chuckatkins", "danlipsa"]
|
||||||
|
|
||||||
version("5.6.0", sha256="5b49cb96ab78eee0427e25200530ac892f9a3da7725109ce1790f8010cb5b377")
|
version("5.6.0", sha256="5b49cb96ab78eee0427e25200530ac892f9a3da7725109ce1790f8010cb5b377")
|
||||||
version("5.5.2", sha256="64561f34c4402b88f3cb20a956842394dde5838efd7ebb301157a837114a0e2d")
|
|
||||||
version("5.5.1", sha256="a6e67a95a7a5711a2b5f95f38ccbff4912262b3e1b1af7d6b9afe8185aa85c0d")
|
|
||||||
version("5.5.0", sha256="1b619e326ff574de808732ca9a7447e4cd14e94ae6568f55b6581896cd569dff")
|
|
||||||
version("5.4.1", sha256="390d0f5dc66bf432e202a39b1f34193af4bf8aad2355338fa5e2778ea07a80e4")
|
|
||||||
version("5.4.0", sha256="f488d84a53b1286d2ee1967e386626c8ad05a6fe4e6cbdaa8d5e042f519f94a9")
|
|
||||||
version("5.3.0", sha256="046631bbf00775edc927314a3db207509666c9c6aadc7079e5159440fd2f88a0")
|
|
||||||
version("5.2.0", sha256="894e42ef8475bb49e4e7e64f4ee2c37c714facd18bfbb1d6de7f69676b062c96")
|
|
||||||
version("5.1.2", sha256="ff02b7307a256b7c6e8ad900dee5796297494df7f9a0804fe801eb2f66e6a187")
|
|
||||||
version("5.0.1", sha256="caddec83ec284162a2cbc46877b0e5a9d2cca59fb4ab0ea35b0948d2492950bb")
|
|
||||||
version("4.4.0", sha256="c2dc334a89df24ce5233b81b74740fc9f10bc181cd604109fd13f6ad2381fc73")
|
|
||||||
|
|
||||||
variant("python", default=False, description="Enable Python support")
|
variant("python", default=False, description="Enable Python support")
|
||||||
variant("python3", default=False, description="Enable Python3 support")
|
|
||||||
variant("essentials", default=False, description="Enable Essentials support")
|
variant("essentials", default=False, description="Enable Essentials support")
|
||||||
variant("extras", default=False, description="Enable Extras support. Implies Essentials.")
|
variant("extras", default=False, description="Enable Extras support. Implies Essentials.")
|
||||||
variant(
|
variant(
|
||||||
|
@ -51,61 +38,24 @@ class Catalyst(CMakePackage):
|
||||||
variant("osmesa", default=True, description="Use offscreen rendering")
|
variant("osmesa", default=True, description="Use offscreen rendering")
|
||||||
conflicts("+osmesa", when="~rendering")
|
conflicts("+osmesa", when="~rendering")
|
||||||
|
|
||||||
conflicts("+python", when="+python3")
|
|
||||||
conflicts("+python", when="@5.6:")
|
|
||||||
conflicts("+python3", when="@:5.5")
|
|
||||||
|
|
||||||
# Workaround for
|
|
||||||
# adding the following to your packages.yaml
|
|
||||||
# packages:
|
|
||||||
# python:
|
|
||||||
# version: [3, 2]
|
|
||||||
# without this you'll get:
|
|
||||||
# paraview requires python version 3:, but spec asked for 2.7.16
|
|
||||||
# for `spack spec paraview+python`
|
|
||||||
# see spack pull request #11539
|
|
||||||
# extends('python', when='+python')
|
|
||||||
extends("python", when="+python")
|
extends("python", when="+python")
|
||||||
extends("python", when="+python3")
|
|
||||||
# VTK < 8.2.1 can't handle Python 3.8
|
# VTK < 8.2.1 can't handle Python 3.8
|
||||||
# This affects Paraview <= 5.7 (VTK 8.2.0)
|
# This affects Paraview <= 5.7 (VTK 8.2.0)
|
||||||
# https://gitlab.kitware.com/vtk/vtk/-/issues/17670
|
# https://gitlab.kitware.com/vtk/vtk/-/issues/17670
|
||||||
depends_on("python@3:3.7", when="@:5.7 +python3", type=("build", "run"))
|
depends_on("python@3:3.7", when="@:5.7 +python", type=("build", "run"))
|
||||||
depends_on("python@3:", when="@5.8:+python3", type=("build", "run"))
|
depends_on("python@3:", when="@5.8:+python", type=("build", "run"))
|
||||||
depends_on("python@2.7:2.8", when="+python", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
depends_on("git", type="build")
|
depends_on("git", type="build")
|
||||||
depends_on("mpi")
|
depends_on("mpi")
|
||||||
|
|
||||||
depends_on("py-numpy", when="+python", type=("build", "run"))
|
depends_on("py-numpy", when="+python", type=("build", "run"))
|
||||||
depends_on("py-numpy", when="+python3", type=("build", "run"))
|
|
||||||
depends_on("py-mpi4py", when="+python", type=("build", "run"))
|
depends_on("py-mpi4py", when="+python", type=("build", "run"))
|
||||||
depends_on("py-mpi4py", when="+python3", type=("build", "run"))
|
|
||||||
|
|
||||||
depends_on("gl@3.2:", when="+rendering")
|
depends_on("gl@3.2:", when="+rendering")
|
||||||
depends_on("osmesa", when="+osmesa")
|
depends_on("osmesa", when="+osmesa")
|
||||||
depends_on("glx", when="~osmesa")
|
depends_on("glx", when="~osmesa")
|
||||||
depends_on("cmake@3.3:", type="build")
|
depends_on("cmake@3.3:", type="build")
|
||||||
|
|
||||||
@when("@5.5.0:5.5.2")
|
|
||||||
def patch(self):
|
|
||||||
"""Apply the patch (it should be fixed in Paraview 5.6)
|
|
||||||
at the package dir to the source code in
|
|
||||||
root_cmakelists_dir."""
|
|
||||||
patch_name = "vtkm-catalyst-pv551.patch"
|
|
||||||
patch = which("patch", required=True)
|
|
||||||
with working_dir(self.root_cmakelists_dir):
|
|
||||||
patch("-s", "-p", "1", "-i", join_path(self.package_dir, patch_name), "-d", ".")
|
|
||||||
|
|
||||||
def url_for_version(self, version):
|
|
||||||
"""Handle ParaView version-based custom URLs."""
|
|
||||||
if version < Version("5.1.0"):
|
|
||||||
return self._urlfmt_gz.format(version.up_to(2), version, "-source")
|
|
||||||
elif version < Version("5.6.0"):
|
|
||||||
return self._urlfmt_gz.format(version.up_to(2), version, "")
|
|
||||||
else:
|
|
||||||
return self._urlfmt_xz.format(version.up_to(2), version, "")
|
|
||||||
|
|
||||||
@property
|
@property
|
||||||
def paraview_subdir(self):
|
def paraview_subdir(self):
|
||||||
"""The paraview subdirectory name as paraview-major.minor"""
|
"""The paraview subdirectory name as paraview-major.minor"""
|
||||||
|
@ -116,7 +66,7 @@ def editions(self):
|
||||||
"""Transcribe spack variants into names of Catalyst Editions"""
|
"""Transcribe spack variants into names of Catalyst Editions"""
|
||||||
selected = ["Base"] # Always required
|
selected = ["Base"] # Always required
|
||||||
|
|
||||||
if "+python" in self.spec or "+python3" in self.spec:
|
if "+python" in self.spec:
|
||||||
selected.append("Enable-Python")
|
selected.append("Enable-Python")
|
||||||
|
|
||||||
if "+essentials" in self.spec:
|
if "+essentials" in self.spec:
|
||||||
|
@ -144,9 +94,7 @@ def do_stage(self, mirror_only=False):
|
||||||
catalyst_source_dir = os.path.abspath(self.root_cmakelists_dir)
|
catalyst_source_dir = os.path.abspath(self.root_cmakelists_dir)
|
||||||
|
|
||||||
python_path = os.path.realpath(
|
python_path = os.path.realpath(
|
||||||
self.spec["python"].command.path
|
self.spec["python"].command.path if "+python" in self.spec else sys.executable
|
||||||
if ("+python3" in self.spec or "+python" in self.spec)
|
|
||||||
else sys.executable
|
|
||||||
)
|
)
|
||||||
|
|
||||||
command = [
|
command = [
|
||||||
|
@ -178,13 +126,11 @@ def setup_run_environment(self, env):
|
||||||
else:
|
else:
|
||||||
lib_dir = self.prefix.lib
|
lib_dir = self.prefix.lib
|
||||||
|
|
||||||
if self.spec.version <= Version("5.4.1"):
|
|
||||||
lib_dir = join_path(lib_dir, paraview_subdir)
|
|
||||||
env.set("ParaView_DIR", self.prefix)
|
env.set("ParaView_DIR", self.prefix)
|
||||||
env.prepend_path("LIBRARY_PATH", lib_dir)
|
env.prepend_path("LIBRARY_PATH", lib_dir)
|
||||||
env.prepend_path("LD_LIBRARY_PATH", lib_dir)
|
env.prepend_path("LD_LIBRARY_PATH", lib_dir)
|
||||||
|
|
||||||
if "+python" in self.spec or "+python3" in self.spec:
|
if "+python" in self.spec:
|
||||||
python_version = self.spec["python"].version.up_to(2)
|
python_version = self.spec["python"].version.up_to(2)
|
||||||
env.prepend_path(
|
env.prepend_path(
|
||||||
"PYTHONPATH",
|
"PYTHONPATH",
|
||||||
|
@ -234,7 +180,7 @@ def nvariant_bool(feature):
|
||||||
"-DVTK_USE_OFFSCREEN:BOOL=%s" % variant_bool("+osmesa"),
|
"-DVTK_USE_OFFSCREEN:BOOL=%s" % variant_bool("+osmesa"),
|
||||||
"-DVTK_OPENGL_HAS_OSMESA:BOOL=%s" % variant_bool("+osmesa"),
|
"-DVTK_OPENGL_HAS_OSMESA:BOOL=%s" % variant_bool("+osmesa"),
|
||||||
]
|
]
|
||||||
if "+python" in spec or "+python3" in spec:
|
if "+python" in spec:
|
||||||
cmake_args.extend(
|
cmake_args.extend(
|
||||||
[
|
[
|
||||||
"-DPARAVIEW_ENABLE_PYTHON:BOOL=ON",
|
"-DPARAVIEW_ENABLE_PYTHON:BOOL=ON",
|
||||||
|
|
|
@ -18,7 +18,6 @@ class CbtfArgonavisGui(QMakePackage):
|
||||||
git = "https://github.com/OpenSpeedShop/cbtf-argonavis-gui.git"
|
git = "https://github.com/OpenSpeedShop/cbtf-argonavis-gui.git"
|
||||||
|
|
||||||
version("develop", branch="master")
|
version("develop", branch="master")
|
||||||
version("1.3.0.0", branch="1.3.0.0")
|
|
||||||
|
|
||||||
depends_on("cmake@3.0.2:", type="build")
|
depends_on("cmake@3.0.2:", type="build")
|
||||||
|
|
||||||
|
@ -33,28 +32,20 @@ class CbtfArgonavisGui(QMakePackage):
|
||||||
|
|
||||||
# For MRNet
|
# For MRNet
|
||||||
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop")
|
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop")
|
||||||
depends_on("mrnet@5.0.1-3+lwthreads", when="@1.3.0.0:9999")
|
|
||||||
|
|
||||||
# Dependencies for the openspeedshop cbtf packages.
|
# Dependencies for the openspeedshop cbtf packages.
|
||||||
depends_on("cbtf@develop", when="@develop")
|
depends_on("cbtf@develop", when="@develop")
|
||||||
depends_on("cbtf@1.9.3:9999", when="@1.3.0.0:9999")
|
|
||||||
|
|
||||||
depends_on("cbtf-krell@develop", when="@develop")
|
depends_on("cbtf-krell@develop", when="@develop")
|
||||||
depends_on("cbtf-krell@1.9.3:9999", when="@1.3.0.0:9999")
|
|
||||||
|
|
||||||
depends_on("cbtf-argonavis@develop", when="@develop")
|
depends_on("cbtf-argonavis@develop", when="@develop")
|
||||||
depends_on("cbtf-argonavis@1.9.3:9999", when="@1.3.0.0:9999")
|
|
||||||
|
|
||||||
depends_on("cuda")
|
depends_on("cuda")
|
||||||
|
|
||||||
depends_on("openspeedshop-utils+cuda@develop", when="@develop")
|
|
||||||
depends_on("openspeedshop-utils@2.4.0:+cuda", when="@1.3.0.0:9999")
|
|
||||||
|
|
||||||
# For Xerces-C
|
# For Xerces-C
|
||||||
depends_on("xerces-c")
|
depends_on("xerces-c")
|
||||||
|
|
||||||
depends_on("graphviz@2.40.1:", when="@develop")
|
depends_on("graphviz@2.40.1:", when="@develop")
|
||||||
depends_on("graphviz@2.40.1", when="@1.3.0.0:9999")
|
|
||||||
|
|
||||||
depends_on("qtgraph")
|
depends_on("qtgraph")
|
||||||
|
|
||||||
|
@ -66,7 +57,6 @@ def setup_build_environment(self, env):
|
||||||
env.set("CBTF_ROOT", self.spec["cbtf"].prefix)
|
env.set("CBTF_ROOT", self.spec["cbtf"].prefix)
|
||||||
env.set("CBTF_KRELL_ROOT", self.spec["cbtf-krell"].prefix)
|
env.set("CBTF_KRELL_ROOT", self.spec["cbtf-krell"].prefix)
|
||||||
env.set("CBTF_ARGONAVIS_ROOT", self.spec["cbtf-argonavis"].prefix)
|
env.set("CBTF_ARGONAVIS_ROOT", self.spec["cbtf-argonavis"].prefix)
|
||||||
env.set("OSS_CBTF_ROOT", self.spec["openspeedshop-utils"].prefix)
|
|
||||||
env.set("GRAPHVIZ_ROOT", self.spec["graphviz"].prefix)
|
env.set("GRAPHVIZ_ROOT", self.spec["graphviz"].prefix)
|
||||||
env.set("QTGRAPHLIB_ROOT", self.spec["qtgraph"].prefix)
|
env.set("QTGRAPHLIB_ROOT", self.spec["qtgraph"].prefix)
|
||||||
env.set("KRELL_ROOT_MRNET", self.spec["mrnet"].prefix)
|
env.set("KRELL_ROOT_MRNET", self.spec["mrnet"].prefix)
|
||||||
|
@ -89,10 +79,6 @@ def setup_run_environment(self, env):
|
||||||
join_path(qtgraph_lib_dir, "{0}".format(self.spec["qt"].version.up_to(3))),
|
join_path(qtgraph_lib_dir, "{0}".format(self.spec["qt"].version.up_to(3))),
|
||||||
)
|
)
|
||||||
|
|
||||||
# The openspeedshop libraries are needed to actually load the
|
|
||||||
# performance information into the GUI.
|
|
||||||
env.prepend_path("LD_LIBRARY_PATH", self.spec["openspeedshop-utils"].prefix.lib64)
|
|
||||||
|
|
||||||
def qmake_args(self):
|
def qmake_args(self):
|
||||||
options = ["-o", "Makefile", "openss-gui.pro"]
|
options = ["-o", "Makefile", "openss-gui.pro"]
|
||||||
return options
|
return options
|
||||||
|
|
|
@ -16,9 +16,6 @@ class CbtfArgonavis(CMakePackage):
|
||||||
git = "https://github.com/OpenSpeedShop/cbtf-argonavis.git"
|
git = "https://github.com/OpenSpeedShop/cbtf-argonavis.git"
|
||||||
|
|
||||||
version("develop", branch="master")
|
version("develop", branch="master")
|
||||||
version("1.9.4.1", branch="1.9.4.1")
|
|
||||||
version("1.9.4", branch="1.9.4")
|
|
||||||
version("1.9.3", branch="1.9.3")
|
|
||||||
|
|
||||||
variant(
|
variant(
|
||||||
"crayfe",
|
"crayfe",
|
||||||
|
@ -54,17 +51,12 @@ class CbtfArgonavis(CMakePackage):
|
||||||
|
|
||||||
# For MRNet
|
# For MRNet
|
||||||
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop", type=("build", "link", "run"))
|
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop", type=("build", "link", "run"))
|
||||||
depends_on("mrnet@5.0.1-3+lwthreads", when="@1.9.3:9999", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
# For CBTF
|
# For CBTF
|
||||||
depends_on("cbtf@develop", when="@develop", type=("build", "link", "run"))
|
depends_on("cbtf@develop", when="@develop", type=("build", "link", "run"))
|
||||||
depends_on("cbtf@1.9.3:9999", when="@1.9.3:9999", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
# For CBTF with runtime
|
# For CBTF with runtime
|
||||||
depends_on("cbtf@develop+runtime", when="@develop+runtime", type=("build", "link", "run"))
|
depends_on("cbtf@develop+runtime", when="@develop+runtime", type=("build", "link", "run"))
|
||||||
depends_on(
|
|
||||||
"cbtf@1.9.3:9999+runtime", when="@1.9.3:9999+runtime", type=("build", "link", "run")
|
|
||||||
)
|
|
||||||
|
|
||||||
# For libmonitor
|
# For libmonitor
|
||||||
depends_on("libmonitor@2013.02.18+commrank", type=("build", "link", "run"))
|
depends_on("libmonitor@2013.02.18+commrank", type=("build", "link", "run"))
|
||||||
|
@ -74,14 +66,10 @@ class CbtfArgonavis(CMakePackage):
|
||||||
|
|
||||||
# For CBTF-KRELL
|
# For CBTF-KRELL
|
||||||
depends_on("cbtf-krell@develop", when="@develop", type=("build", "link", "run"))
|
depends_on("cbtf-krell@develop", when="@develop", type=("build", "link", "run"))
|
||||||
depends_on("cbtf-krell@1.9.3:9999", when="@1.9.3:9999", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
depends_on(
|
depends_on(
|
||||||
"cbtf-krell@develop+runtime", when="@develop+runtime", type=("build", "link", "run")
|
"cbtf-krell@develop+runtime", when="@develop+runtime", type=("build", "link", "run")
|
||||||
)
|
)
|
||||||
depends_on(
|
|
||||||
"cbtf-krell@1.9.3:9999+runtime", when="@1.9.3:9999+runtime", type=("build", "link", "run")
|
|
||||||
)
|
|
||||||
|
|
||||||
# For CUDA
|
# For CUDA
|
||||||
depends_on("cuda")
|
depends_on("cuda")
|
||||||
|
|
|
@ -19,9 +19,6 @@ class CbtfKrell(CMakePackage):
|
||||||
git = "https://github.com/OpenSpeedShop/cbtf-krell.git"
|
git = "https://github.com/OpenSpeedShop/cbtf-krell.git"
|
||||||
|
|
||||||
version("develop", branch="master")
|
version("develop", branch="master")
|
||||||
version("1.9.4.1", branch="1.9.4.1")
|
|
||||||
version("1.9.4", branch="1.9.4")
|
|
||||||
version("1.9.3", branch="1.9.3")
|
|
||||||
|
|
||||||
# MPI variants
|
# MPI variants
|
||||||
variant(
|
variant(
|
||||||
|
@ -70,30 +67,23 @@ class CbtfKrell(CMakePackage):
|
||||||
|
|
||||||
# For Dyninst
|
# For Dyninst
|
||||||
depends_on("dyninst@10.1.0", when="@develop")
|
depends_on("dyninst@10.1.0", when="@develop")
|
||||||
depends_on("dyninst@10.1.0", when="@1.9.3:9999")
|
|
||||||
|
|
||||||
# For MRNet
|
# For MRNet
|
||||||
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop", type=("build", "link", "run"))
|
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop", type=("build", "link", "run"))
|
||||||
depends_on("mrnet@5.0.1-3+lwthreads", when="@1.9.3:9999", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
# For Xerces-C
|
# For Xerces-C
|
||||||
depends_on("xerces-c")
|
depends_on("xerces-c")
|
||||||
|
|
||||||
# For CBTF
|
# For CBTF
|
||||||
depends_on("cbtf@develop", when="@develop", type=("build", "link", "run"))
|
depends_on("cbtf@develop", when="@develop", type=("build", "link", "run"))
|
||||||
depends_on("cbtf@1.9.3:9999", when="@1.9.3:9999", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
# For CBTF with runtime
|
# For CBTF with runtime
|
||||||
depends_on("cbtf@develop+runtime", when="@develop+runtime", type=("build", "link", "run"))
|
depends_on("cbtf@develop+runtime", when="@develop+runtime", type=("build", "link", "run"))
|
||||||
depends_on(
|
|
||||||
"cbtf@1.9.3:9999+runtime", when="@1.9.3:9999+runtime", type=("build", "link", "run")
|
|
||||||
)
|
|
||||||
|
|
||||||
# for services and collectors
|
# for services and collectors
|
||||||
depends_on("libmonitor@2013.02.18+commrank", type=("build", "link", "run"))
|
depends_on("libmonitor@2013.02.18+commrank", type=("build", "link", "run"))
|
||||||
|
|
||||||
depends_on("libunwind", when="@develop")
|
depends_on("libunwind", when="@develop")
|
||||||
depends_on("libunwind@1.2.1", when="@1.9.3:9999")
|
|
||||||
|
|
||||||
depends_on("papi@5.4.1:", type=("build", "link", "run"))
|
depends_on("papi@5.4.1:", type=("build", "link", "run"))
|
||||||
|
|
||||||
|
@ -106,7 +96,6 @@ class CbtfKrell(CMakePackage):
|
||||||
depends_on("mpt", when="+mpt")
|
depends_on("mpt", when="+mpt")
|
||||||
|
|
||||||
depends_on("python", when="@develop", type=("build", "run"))
|
depends_on("python", when="@develop", type=("build", "run"))
|
||||||
depends_on("python@2.7.14:2.7.15", when="@2.3.1.3:9999", type=("build", "run"))
|
|
||||||
|
|
||||||
depends_on("gotcha")
|
depends_on("gotcha")
|
||||||
|
|
||||||
|
|
|
@ -14,9 +14,6 @@ class CbtfLanl(CMakePackage):
|
||||||
git = "https://github.com/OpenSpeedShop/cbtf-lanl.git"
|
git = "https://github.com/OpenSpeedShop/cbtf-lanl.git"
|
||||||
|
|
||||||
version("develop", branch="master")
|
version("develop", branch="master")
|
||||||
version("1.9.4.1", branch="1.9.4.1")
|
|
||||||
version("1.9.4", branch="1.9.4")
|
|
||||||
version("1.9.3", branch="1.9.3")
|
|
||||||
|
|
||||||
variant(
|
variant(
|
||||||
"build_type",
|
"build_type",
|
||||||
|
@ -33,25 +30,20 @@ class CbtfLanl(CMakePackage):
|
||||||
|
|
||||||
# For MRNet
|
# For MRNet
|
||||||
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop")
|
depends_on("mrnet@5.0.1-3:+lwthreads", when="@develop")
|
||||||
depends_on("mrnet@5.0.1-3+lwthreads", when="@1.9.3:9999")
|
|
||||||
|
|
||||||
# For Xerces-C
|
# For Xerces-C
|
||||||
depends_on("xerces-c")
|
depends_on("xerces-c")
|
||||||
|
|
||||||
# For CBTF
|
# For CBTF
|
||||||
depends_on("cbtf@develop", when="@develop")
|
depends_on("cbtf@develop", when="@develop")
|
||||||
depends_on("cbtf@1.9.3:9999", when="@1.9.3:9999")
|
|
||||||
|
|
||||||
# For CBTF with runtime
|
# For CBTF with runtime
|
||||||
depends_on("cbtf@develop+runtime", when="@develop+runtime")
|
depends_on("cbtf@develop+runtime", when="@develop+runtime")
|
||||||
depends_on("cbtf@1.9.3:9999+runtime", when="@1.9.3:9999+runtime")
|
|
||||||
|
|
||||||
# For CBTF-KRELL
|
# For CBTF-KRELL
|
||||||
depends_on("cbtf-krell@develop", when="@develop")
|
depends_on("cbtf-krell@develop", when="@develop")
|
||||||
depends_on("cbtf-krell@1.9.3:9999", when="@1.9.3:9999")
|
|
||||||
|
|
||||||
depends_on("cbtf-krell@develop+runtime", when="@develop+runtime")
|
depends_on("cbtf-krell@develop+runtime", when="@develop+runtime")
|
||||||
depends_on("cbtf-krell@1.9.3:9999+runtime", when="@1.9.3:9999+runtime")
|
|
||||||
|
|
||||||
parallel = False
|
parallel = False
|
||||||
|
|
||||||
|
|
|
@ -75,29 +75,15 @@ def configure_args(self):
|
||||||
|
|
||||||
# make sure we do not pick a python outside spack:
|
# make sure we do not pick a python outside spack:
|
||||||
if self.spec.satisfies("@6.1.1"):
|
if self.spec.satisfies("@6.1.1"):
|
||||||
if self.spec.satisfies("^python@3:"):
|
args.extend(
|
||||||
args.extend(
|
["--with-python3-path", self.spec["python"].prefix, "--with-python-path", "no"]
|
||||||
["--with-python3-path", self.spec["python"].prefix, "--with-python-path", "no"]
|
)
|
||||||
)
|
|
||||||
elif self.spec.satisfies("^python@:2.9"):
|
|
||||||
args.extend(
|
|
||||||
["--with-python-path", self.spec["python"].prefix, "--with-python3-path", "no"]
|
|
||||||
)
|
|
||||||
else:
|
|
||||||
args.extend(["--with-python-path", "no", "--with-python3-path", "no"])
|
|
||||||
else:
|
else:
|
||||||
# versions 7 and above, where --with-python-path recognized the
|
# versions 7 and above, where --with-python-path recognized the
|
||||||
# python version:
|
# python version:
|
||||||
if self.spec.satisfies("^python@3:"):
|
args.extend(
|
||||||
args.extend(
|
["--with-python-path", self.spec["python"].prefix, "--with-python2-path", "no"]
|
||||||
["--with-python-path", self.spec["python"].prefix, "--with-python2-path", "no"]
|
)
|
||||||
)
|
|
||||||
elif self.spec.satisfies("^python@:2.9"):
|
|
||||||
args.extend(
|
|
||||||
["--with-python-path", self.spec["python"].prefix, "--with-python3-path", "no"]
|
|
||||||
)
|
|
||||||
else:
|
|
||||||
args.extend(["--with-python2-path", "no", "--with-python3-path", "no"])
|
|
||||||
|
|
||||||
# disable these bits
|
# disable these bits
|
||||||
for p in ["mysql", "xrootd"]:
|
for p in ["mysql", "xrootd"]:
|
||||||
|
|
|
@ -27,7 +27,7 @@ class Ceed(BundlePackage, CudaPackage, ROCmPackage):
|
||||||
variant("mfem", default=True, description="Build MFEM, Laghos and Remhos")
|
variant("mfem", default=True, description="Build MFEM, Laghos and Remhos")
|
||||||
variant("nek", default=True, description="Build Nek5000, GSLIB, Nekbone, and NekCEM")
|
variant("nek", default=True, description="Build Nek5000, GSLIB, Nekbone, and NekCEM")
|
||||||
variant("occa", default=True, description="Enable OCCA support")
|
variant("occa", default=True, description="Enable OCCA support")
|
||||||
variant("petsc", default=True, description="Build PETSc and HPGMG")
|
variant("petsc", default=True, description="Build PETSc and HPGMG", when="@2:")
|
||||||
variant("pumi", default=True, description="Build PUMI")
|
variant("pumi", default=True, description="Build PUMI")
|
||||||
variant("omega-h", default=True, description="Build Omega_h")
|
variant("omega-h", default=True, description="Build Omega_h")
|
||||||
variant(
|
variant(
|
||||||
|
@ -202,14 +202,8 @@ class Ceed(BundlePackage, CudaPackage, ROCmPackage):
|
||||||
depends_on("petsc@3.11.1+mpi+hypre+suite-sparse+mumps+double~int64", when="@2.0.0+petsc+mfem")
|
depends_on("petsc@3.11.1+mpi+hypre+suite-sparse+mumps+double~int64", when="@2.0.0+petsc+mfem")
|
||||||
depends_on("hpgmg@0.4+fe", when="@2.0.0+petsc")
|
depends_on("hpgmg@0.4+fe", when="@2.0.0+petsc")
|
||||||
# ceed-1.0
|
# ceed-1.0
|
||||||
# For a +quickbuild we disable hdf5, and superlu-dist in PETSc.
|
|
||||||
# Ideally, these can be turned into recommendations to Spack for
|
|
||||||
# concretizing the PETSc spec, if Spack ever supports recommendations.
|
|
||||||
depends_on("petsc@3.8.3~hdf5~superlu-dist", when="@1.0.0+petsc+quickbuild")
|
|
||||||
depends_on("petsc@3.8.3+mpi+double~int64", when="@1.0.0+petsc~mfem")
|
|
||||||
# The mfem petsc examples need the petsc variants +hypre, +suite-sparse,
|
# The mfem petsc examples need the petsc variants +hypre, +suite-sparse,
|
||||||
# and +mumps:
|
# and +mumps:
|
||||||
depends_on("petsc@3.8.3+mpi+hypre+suite-sparse+mumps+double~int64", when="@1.0.0+petsc+mfem")
|
|
||||||
depends_on("hpgmg@a0a5510df23b+fe", when="@1.0.0+petsc")
|
depends_on("hpgmg@a0a5510df23b+fe", when="@1.0.0+petsc")
|
||||||
|
|
||||||
# MAGMA
|
# MAGMA
|
||||||
|
|
|
@ -17,4 +17,3 @@ class Cget(PythonPackage):
|
||||||
depends_on("py-setuptools", type="build")
|
depends_on("py-setuptools", type="build")
|
||||||
depends_on("py-six@1.10:", type=("build", "run"))
|
depends_on("py-six@1.10:", type=("build", "run"))
|
||||||
depends_on("py-click@6.6:", type=("build", "run"))
|
depends_on("py-click@6.6:", type=("build", "run"))
|
||||||
depends_on("py-subprocess32", when="^python@:2", type=("build", "run"))
|
|
||||||
|
|
|
@ -1,25 +0,0 @@
|
||||||
From 15c3cc127d8f48324b00fd654d9630724eedcfcd Mon Sep 17 00:00:00 2001
|
|
||||||
From: John Jolly <john.jolly@gmail.com>
|
|
||||||
Date: Fri, 5 Jun 2020 23:54:13 -0600
|
|
||||||
Subject: [PATCH] Add GCC libquadmath for rose
|
|
||||||
|
|
||||||
---
|
|
||||||
Makefile.am | 2 +-
|
|
||||||
1 file changed, 1 insertion(+), 1 deletion(-)
|
|
||||||
|
|
||||||
diff --git a/Makefile.am b/Makefile.am
|
|
||||||
index 7dd92b0..a8daba1 100644
|
|
||||||
--- a/Makefile.am
|
|
||||||
+++ b/Makefile.am
|
|
||||||
@@ -7,7 +7,7 @@ core_cxxflags =-g --std=c++11
|
|
||||||
|
|
||||||
## Core Libraries ##
|
|
||||||
core_libs = -lcodegen -lomega
|
|
||||||
-core_libs += -lm -lrose -lrt -lutil -ldl
|
|
||||||
+core_libs += -lm -lrose -lrt -lutil -ldl -lquadmath
|
|
||||||
core_libs += -lboost_date_time -lboost_filesystem -lboost_program_options
|
|
||||||
core_libs += -lboost_regex -lboost_system -lboost_wave -lboost_iostreams
|
|
||||||
|
|
||||||
--
|
|
||||||
2.25.1
|
|
||||||
|
|
|
@ -1,53 +0,0 @@
|
||||||
From 336dfb3a1c314b6eec23ab4f99114be94c5e518e Mon Sep 17 00:00:00 2001
|
|
||||||
From: John Jolly <john.jolly@gmail.com>
|
|
||||||
Date: Fri, 5 Jun 2020 23:45:39 -0600
|
|
||||||
Subject: [PATCH] Add GMPHOME option
|
|
||||||
|
|
||||||
---
|
|
||||||
Makefile.am | 4 ++++
|
|
||||||
configure.ac | 7 +++++++
|
|
||||||
2 files changed, 11 insertions(+)
|
|
||||||
|
|
||||||
diff --git a/Makefile.am b/Makefile.am
|
|
||||||
index 541cb99..7dd92b0 100644
|
|
||||||
--- a/Makefile.am
|
|
||||||
+++ b/Makefile.am
|
|
||||||
@@ -16,6 +16,8 @@ core_libs += -liegenlib -lisl -lgmp
|
|
||||||
core_libdirs = -Lomega/code_gen/obj -Lomega/omega_lib/obj
|
|
||||||
core_libdirs += -L$(ROSEHOME)/lib -L$(BOOSTHOME)/lib
|
|
||||||
|
|
||||||
+core_libdirs += -L$(GMPHOME)/lib
|
|
||||||
+
|
|
||||||
core_libdirs += -L$(ISLHOME)/lib
|
|
||||||
|
|
||||||
core_libdirs += -L$(IEGENHOME)/lib
|
|
||||||
@@ -32,6 +34,8 @@ core_includes += -I$(srcdir)/include/chill
|
|
||||||
core_includes += -I$(ROSEHOME)/include/rose
|
|
||||||
core_includes += -I$(BOOSTHOME)/include
|
|
||||||
|
|
||||||
+core_includes += -I$(GSLHOME)/include
|
|
||||||
+
|
|
||||||
core_includes += -I$(ISLHOME)/include
|
|
||||||
|
|
||||||
core_includes += -I$(IEGENHOME)/include/iegenlib
|
|
||||||
diff --git a/configure.ac b/configure.ac
|
|
||||||
index e146839..18ecf76 100644
|
|
||||||
--- a/configure.ac
|
|
||||||
+++ b/configure.ac
|
|
||||||
@@ -58,6 +58,13 @@ AC_ARG_WITH([boost],[
|
|
||||||
],[
|
|
||||||
AC_SUBST([BOOSTHOME], ["${BOOSTHOME}"])])
|
|
||||||
|
|
||||||
+AC_ARG_WITH([gmp],[
|
|
||||||
+ AS_HELP_STRING([--with-gmp],[set path to gmp])
|
|
||||||
+ ],[
|
|
||||||
+ AC_SUBST([GMPHOME], [$withval])
|
|
||||||
+ ],[
|
|
||||||
+ AC_SUBST([GMPHOME], ["${GMPHOME}"])])
|
|
||||||
+
|
|
||||||
AC_ARG_WITH([iegen],[
|
|
||||||
AS_HELP_STRING([--with-iegen],[set path to iegenlib])
|
|
||||||
],[
|
|
||||||
--
|
|
||||||
2.25.1
|
|
||||||
|
|
|
@ -1,53 +0,0 @@
|
||||||
From 3b4094b9cf1beec0b870e9ca0c3e51ed9b10dc39 Mon Sep 17 00:00:00 2001
|
|
||||||
From: John Jolly <john.jolly@gmail.com>
|
|
||||||
Date: Fri, 5 Jun 2020 23:21:18 -0600
|
|
||||||
Subject: [PATCH] Add ISLHOME option
|
|
||||||
|
|
||||||
---
|
|
||||||
Makefile.am | 4 ++++
|
|
||||||
configure.ac | 7 +++++++
|
|
||||||
2 files changed, 11 insertions(+)
|
|
||||||
|
|
||||||
diff --git a/Makefile.am b/Makefile.am
|
|
||||||
index 30667a8..541cb99 100644
|
|
||||||
--- a/Makefile.am
|
|
||||||
+++ b/Makefile.am
|
|
||||||
@@ -16,6 +16,8 @@ core_libs += -liegenlib -lisl -lgmp
|
|
||||||
core_libdirs = -Lomega/code_gen/obj -Lomega/omega_lib/obj
|
|
||||||
core_libdirs += -L$(ROSEHOME)/lib -L$(BOOSTHOME)/lib
|
|
||||||
|
|
||||||
+core_libdirs += -L$(ISLHOME)/lib
|
|
||||||
+
|
|
||||||
core_libdirs += -L$(IEGENHOME)/lib
|
|
||||||
core_libdirs += -L$(IEGENHOME)/../lib/installed/lib
|
|
||||||
|
|
||||||
@@ -30,6 +32,8 @@ core_includes += -I$(srcdir)/include/chill
|
|
||||||
core_includes += -I$(ROSEHOME)/include/rose
|
|
||||||
core_includes += -I$(BOOSTHOME)/include
|
|
||||||
|
|
||||||
+core_includes += -I$(ISLHOME)/include
|
|
||||||
+
|
|
||||||
core_includes += -I$(IEGENHOME)/include/iegenlib
|
|
||||||
core_includes += -I$(IEGENHOME)/../lib/installed/include
|
|
||||||
|
|
||||||
diff --git a/configure.ac b/configure.ac
|
|
||||||
index 8e163cd..e146839 100644
|
|
||||||
--- a/configure.ac
|
|
||||||
+++ b/configure.ac
|
|
||||||
@@ -65,6 +65,13 @@ AC_ARG_WITH([iegen],[
|
|
||||||
],[
|
|
||||||
AC_SUBST([IEGENHOME], ["${IEGENHOME}"])])
|
|
||||||
|
|
||||||
+AC_ARG_WITH([isl],[
|
|
||||||
+ AS_HELP_STRING([--with-isl],[set path to isl])
|
|
||||||
+ ],[
|
|
||||||
+ AC_SUBST([ISLHOME], [$withval])
|
|
||||||
+ ],[
|
|
||||||
+ AC_SUBST([ISLHOME], ["${ISLHOME}"])])
|
|
||||||
+
|
|
||||||
AC_ARG_WITH([omega],[
|
|
||||||
AS_HELP_STRING([--with-omega],[set omega home])],[
|
|
||||||
AC_SUBST([OMEGAHOME], [$withval])],[
|
|
||||||
--
|
|
||||||
2.25.1
|
|
||||||
|
|
|
@ -1,92 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
from spack.pkg.builtin.boost import Boost
|
|
||||||
|
|
||||||
|
|
||||||
class Chill(AutotoolsPackage):
|
|
||||||
"""A polyheadral compiler for autotuning"""
|
|
||||||
|
|
||||||
homepage = "https://github.com/CtopCsUtahEdu/chill"
|
|
||||||
url = "https://github.com/CtopCsUtahEdu/chill/archive/v0.3.tar.gz"
|
|
||||||
git = "https://github.com/CtopCsUtahEdu/chill.git"
|
|
||||||
|
|
||||||
maintainers = ["dhuth"]
|
|
||||||
|
|
||||||
version("master", branch="master")
|
|
||||||
version("0.3", sha256="574b622368a6bfaadbe9c1fa02fabefdc6c006069246f67d299f943b7e1d8aa3")
|
|
||||||
|
|
||||||
depends_on("boost@1.66.0 cxxstd=11", type="build")
|
|
||||||
|
|
||||||
# TODO: replace this with an explicit list of components of Boost,
|
|
||||||
# for instance depends_on('boost +filesystem')
|
|
||||||
# See https://github.com/spack/spack/pull/22303 for reference
|
|
||||||
depends_on(Boost.with_default_variants, type="build")
|
|
||||||
depends_on("rose@0.9.13.0: +cxx11", type=("build", "run"))
|
|
||||||
depends_on("autoconf", type="build")
|
|
||||||
depends_on("automake@1.14:", type="build")
|
|
||||||
depends_on("libtool", type="build")
|
|
||||||
depends_on("m4", type="build")
|
|
||||||
depends_on("iegenlib", type=("build", "run"))
|
|
||||||
depends_on("bison@3.4.2:", type="build")
|
|
||||||
depends_on("flex", type="build")
|
|
||||||
# Does not currrently work with Python3
|
|
||||||
depends_on("python@2.7:2.8")
|
|
||||||
depends_on("isl", type="build")
|
|
||||||
depends_on("gmp", type="build")
|
|
||||||
|
|
||||||
patch("Add-ISLHOME-option.patch")
|
|
||||||
patch("Add-GMPHOME-option.patch")
|
|
||||||
patch("Add-GCC-libquadmath-for-rose.patch")
|
|
||||||
|
|
||||||
build_directory = "spack-build"
|
|
||||||
|
|
||||||
def autoreconf(self, spec, prefix):
|
|
||||||
bash = which("bash")
|
|
||||||
bash("./bootstrap")
|
|
||||||
|
|
||||||
def setup_build_environment(self, env):
|
|
||||||
rose_home = self.spec["rose"].prefix
|
|
||||||
boost_home = self.spec["boost"].prefix
|
|
||||||
iegen_home = self.spec["iegenlib"].prefix
|
|
||||||
isl_home = self.spec["isl"].prefix
|
|
||||||
gmp_home = self.spec["gmp"].prefix
|
|
||||||
|
|
||||||
env.set("ROSEHOME", rose_home)
|
|
||||||
env.set("BOOSTHOME", boost_home)
|
|
||||||
env.set("IEGENHOME", iegen_home)
|
|
||||||
env.set("ISLHOME", isl_home)
|
|
||||||
env.set("GMPHOME", gmp_home)
|
|
||||||
|
|
||||||
env.append_path("LD_LIBRARY_PATH", rose_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", boost_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", iegen_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", isl_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", gmp_home.lib)
|
|
||||||
|
|
||||||
def setup_run_environment(self, env):
|
|
||||||
rose_home = self.spec["rose"].prefix
|
|
||||||
boost_home = self.spec["boost"].prefix
|
|
||||||
iegen_home = self.spec["iegenlib"].prefix
|
|
||||||
isl_home = self.spec["isl"].prefix
|
|
||||||
gmp_home = self.spec["gmp"].prefix
|
|
||||||
|
|
||||||
env.append_path("LD_LIBRARY_PATH", rose_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", boost_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", iegen_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", isl_home.lib)
|
|
||||||
env.append_path("LD_LIBRARY_PATH", gmp_home.lib)
|
|
||||||
|
|
||||||
def configure_args(self):
|
|
||||||
args = [
|
|
||||||
"--with-rose={0}".format(self.spec["rose"].prefix),
|
|
||||||
"--with-boost={0}".format(self.spec["boost"].prefix),
|
|
||||||
"--with-iegen={0}".format(self.spec["iegenlib"].prefix),
|
|
||||||
"--with-isl={0}".format(self.spec["isl"].prefix),
|
|
||||||
"--with-gmp={0}".format(self.spec["gmp"].prefix),
|
|
||||||
]
|
|
||||||
|
|
||||||
return args
|
|
|
@ -27,7 +27,6 @@ class Citcoms(AutotoolsPackage):
|
||||||
# Required dependencies
|
# Required dependencies
|
||||||
depends_on("mpi")
|
depends_on("mpi")
|
||||||
depends_on("zlib")
|
depends_on("zlib")
|
||||||
depends_on("python@:2", type="run") # needed for post-processing scripts
|
|
||||||
depends_on("automake", when="@master", type="build")
|
depends_on("automake", when="@master", type="build")
|
||||||
depends_on("autoconf", when="@master", type="build")
|
depends_on("autoconf", when="@master", type="build")
|
||||||
depends_on("libtool", when="@master", type="build")
|
depends_on("libtool", when="@master", type="build")
|
||||||
|
|
|
@ -24,7 +24,7 @@ class Cmor(AutotoolsPackage):
|
||||||
version("3.1.2", sha256="ee58b6d405f081e4e0633af931b7992f1a570953b71ece17c01ab9e15889211a")
|
version("3.1.2", sha256="ee58b6d405f081e4e0633af931b7992f1a570953b71ece17c01ab9e15889211a")
|
||||||
|
|
||||||
variant("fortran", default=True, description="Enable Fortran API")
|
variant("fortran", default=True, description="Enable Fortran API")
|
||||||
variant("python", default=False, description="Enable PYTHON support")
|
variant("python", default=False, description="Enable PYTHON support", when="@3.4:")
|
||||||
|
|
||||||
# older releases require another implementation providing uuid_create()
|
# older releases require another implementation providing uuid_create()
|
||||||
# 3.6.1 requires libuuid(only the lib) or util-linux-uuid providing uuid_generate()
|
# 3.6.1 requires libuuid(only the lib) or util-linux-uuid providing uuid_generate()
|
||||||
|
@ -37,7 +37,6 @@ class Cmor(AutotoolsPackage):
|
||||||
depends_on("udunits")
|
depends_on("udunits")
|
||||||
|
|
||||||
extends("python", when="+python")
|
extends("python", when="+python")
|
||||||
depends_on("python@:2", when="@:3.3 +python", type=("build", "run"))
|
|
||||||
depends_on("py-pip", when="+python", type="build")
|
depends_on("py-pip", when="+python", type="build")
|
||||||
depends_on("py-wheel", when="+python", type="build")
|
depends_on("py-wheel", when="+python", type="build")
|
||||||
depends_on("py-numpy", type=("build", "run"), when="+python")
|
depends_on("py-numpy", type=("build", "run"), when="+python")
|
||||||
|
|
|
@ -1,41 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Couchdb(AutotoolsPackage):
|
|
||||||
"""A CouchDB server hosts named databases, which store documents. Each document
|
|
||||||
is uniquely named in the database, and CouchDB provides a RESTful HTTP API
|
|
||||||
for reading and updating (add, edit, delete) database documents."""
|
|
||||||
|
|
||||||
homepage = "https://couchdb.apache.org/"
|
|
||||||
url = "https://archive.apache.org/dist/couchdb/source/3.1.0/apache-couchdb-3.1.0.tar.gz"
|
|
||||||
|
|
||||||
version("3.1.0", sha256="4867c796a1ff6f0794b7bd3863089ea6397bd5c47544f9b97db8cdacff90f8ed")
|
|
||||||
version("3.0.1", sha256="08d61d5c779957d074d5097f28a2dfc9eb518af3c479d5318135ff31212cc522")
|
|
||||||
version("3.0.0", sha256="d109bb1a70fe746c04a9bf79a2bb1096cb949c750c29dbd196e9c2efd4167fd9")
|
|
||||||
|
|
||||||
depends_on("icu4c")
|
|
||||||
depends_on("openssl")
|
|
||||||
depends_on("curl")
|
|
||||||
depends_on("node-js@6:")
|
|
||||||
depends_on("mozjs@1.8.5")
|
|
||||||
depends_on("gmake", type="build")
|
|
||||||
depends_on("help2man", type="build")
|
|
||||||
depends_on("python", type=("build", "run"))
|
|
||||||
depends_on("erlang@:22", type=("build", "run"))
|
|
||||||
|
|
||||||
def setup_build_environment(self, env):
|
|
||||||
env.set("CPATH", self.spec["mozjs"].prefix.include.js)
|
|
||||||
|
|
||||||
def configure_args(self):
|
|
||||||
args = ["--disable-docs"]
|
|
||||||
return args
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
make("release")
|
|
||||||
with working_dir("rel/couchdb/"):
|
|
||||||
install_tree(".", prefix)
|
|
|
@ -53,7 +53,10 @@ class Cp2k(MakefilePackage, CudaPackage):
|
||||||
description=("Enable the alternative PEXSI method" "for density matrix evaluation"),
|
description=("Enable the alternative PEXSI method" "for density matrix evaluation"),
|
||||||
)
|
)
|
||||||
variant(
|
variant(
|
||||||
"elpa", default=False, description="Enable optimised diagonalisation routines from ELPA"
|
"elpa",
|
||||||
|
default=False,
|
||||||
|
description="Enable optimised diagonalisation routines from ELPA",
|
||||||
|
when="@8.3:",
|
||||||
)
|
)
|
||||||
variant(
|
variant(
|
||||||
"sirius",
|
"sirius",
|
||||||
|
@ -164,9 +167,6 @@ class Cp2k(MakefilePackage, CudaPackage):
|
||||||
conflicts("~mpi", msg="elpa requires MPI")
|
conflicts("~mpi", msg="elpa requires MPI")
|
||||||
depends_on("elpa+openmp", when="+openmp")
|
depends_on("elpa+openmp", when="+openmp")
|
||||||
depends_on("elpa~openmp", when="~openmp")
|
depends_on("elpa~openmp", when="~openmp")
|
||||||
depends_on("elpa@2011.12:2016.13", when="@:5")
|
|
||||||
depends_on("elpa@2011.12:2017.11", when="@6.0:6")
|
|
||||||
depends_on("elpa@2018.05:2020.11.001", when="@7.0:8.2")
|
|
||||||
depends_on("elpa@2021.05:", when="@8.3:")
|
depends_on("elpa@2021.05:", when="@8.3:")
|
||||||
depends_on("elpa@2021.11.001:", when="@9.1:")
|
depends_on("elpa@2021.11.001:", when="@9.1:")
|
||||||
|
|
||||||
|
|
|
@ -51,7 +51,7 @@ class Damaris(CMakePackage):
|
||||||
depends_on("xsd")
|
depends_on("xsd")
|
||||||
depends_on("xerces-c")
|
depends_on("xerces-c")
|
||||||
depends_on("hdf5@1.8.20:", when="+hdf5")
|
depends_on("hdf5@1.8.20:", when="+hdf5")
|
||||||
depends_on("paraview+python3", when="+catalyst")
|
depends_on("paraview+python", when="+catalyst")
|
||||||
depends_on("visit+mpi", when="+visit")
|
depends_on("visit+mpi", when="+visit")
|
||||||
depends_on("boost+thread+log+filesystem+date_time+python+numpy @1.67:", when="+python")
|
depends_on("boost+thread+log+filesystem+date_time+python+numpy @1.67:", when="+python")
|
||||||
|
|
||||||
|
|
|
@ -182,10 +182,8 @@ class Dealii(CMakePackage, CudaPackage):
|
||||||
depends_on("p4est", when="+p4est+mpi")
|
depends_on("p4est", when="+p4est+mpi")
|
||||||
depends_on("petsc+mpi~int64", when="+petsc+mpi~int64")
|
depends_on("petsc+mpi~int64", when="+petsc+mpi~int64")
|
||||||
depends_on("petsc+mpi+int64", when="+petsc+mpi+int64")
|
depends_on("petsc+mpi+int64", when="+petsc+mpi+int64")
|
||||||
depends_on("petsc@:3.6.4", when="@:8.4.1+petsc+mpi")
|
|
||||||
depends_on("scalapack", when="@9.0:+scalapack")
|
depends_on("scalapack", when="@9.0:+scalapack")
|
||||||
depends_on("slepc", when="+slepc+petsc+mpi")
|
depends_on("slepc", when="+slepc+petsc+mpi")
|
||||||
depends_on("slepc@:3.6.3", when="@:8.4.1+slepc+petsc+mpi")
|
|
||||||
depends_on("slepc~arpack", when="+slepc+petsc+mpi+int64")
|
depends_on("slepc~arpack", when="+slepc+petsc+mpi+int64")
|
||||||
depends_on("sundials@:3~pthread", when="@9.0:9.2+sundials")
|
depends_on("sundials@:3~pthread", when="@9.0:9.2+sundials")
|
||||||
depends_on("sundials@5:5.8", when="@9.3:9.3.3+sundials")
|
depends_on("sundials@5:5.8", when="@9.3:9.3.3+sundials")
|
||||||
|
|
|
@ -1,62 +0,0 @@
|
||||||
diff --git a/config/ApplicationUnitTest.cmake b/config/ApplicationUnitTest.cmake
|
|
||||||
index a0a79858..0c47b72a 100644
|
|
||||||
--- a/config/ApplicationUnitTest.cmake
|
|
||||||
+++ b/config/ApplicationUnitTest.cmake
|
|
||||||
@@ -249,7 +249,7 @@ macro( aut_register_test )
|
|
||||||
endif(VERBOSE_DEBUG)
|
|
||||||
|
|
||||||
# Look for python, which is used to drive application unit tests
|
|
||||||
- if( NOT PYTHONINTERP_FOUND )
|
|
||||||
+ if( NOT Python_Interpreter_FOUND )
|
|
||||||
# python should have been found when vendor_libraries.cmake was run.
|
|
||||||
message( FATAL_ERROR "Draco requires python. Python not found in PATH.")
|
|
||||||
endif()
|
|
||||||
@@ -289,7 +289,7 @@ macro( aut_register_test )
|
|
||||||
if (${PYTHON_TEST})
|
|
||||||
add_test(
|
|
||||||
NAME ${ctestname_base}${argname}
|
|
||||||
- COMMAND "${PYTHON_EXECUTABLE}"
|
|
||||||
+ COMMAND "${Python_EXECUTABLE}"
|
|
||||||
${aut_DRIVER}
|
|
||||||
${SHARED_ARGUMENTS}
|
|
||||||
)
|
|
||||||
diff --git a/config/draco-config-install.cmake.in b/config/draco-config-install.cmake.in
|
|
||||||
index c5bf1c75..a16f72f4 100644
|
|
||||||
--- a/config/draco-config-install.cmake.in
|
|
||||||
+++ b/config/draco-config-install.cmake.in
|
|
||||||
@@ -107,8 +107,9 @@ set( WITH_CUDA "@WITH_CUDA@" )
|
|
||||||
#endif()
|
|
||||||
|
|
||||||
# Python
|
|
||||||
-set( PYTHONINTERP_FOUND "@PYTHONINTERP_FOUND@" )
|
|
||||||
-set( PYTHON_EXECUTABLE "@PYTHON_EXECUTABLE@" )
|
|
||||||
+set( Python_FOUND "@Python_FOUND@" )
|
|
||||||
+set( Python_Interpreter_FOUND "@Python_Interpreter_FOUND@" )
|
|
||||||
+set( Python_EXECUTABLE "@Python_EXECUTABLE@" )
|
|
||||||
|
|
||||||
## ---------------------------------------------------------------------------
|
|
||||||
## Set useful general variables
|
|
||||||
diff --git a/config/vendor_libraries.cmake b/config/vendor_libraries.cmake
|
|
||||||
index c3e079bc..6b393eb4 100644
|
|
||||||
--- a/config/vendor_libraries.cmake
|
|
||||||
+++ b/config/vendor_libraries.cmake
|
|
||||||
@@ -16,7 +16,7 @@ include( setupMPI ) # defines the macros setupMPILibrariesUnix|Windows
|
|
||||||
macro( setupPython )
|
|
||||||
|
|
||||||
message( STATUS "Looking for Python...." )
|
|
||||||
- find_package(PythonInterp 2.7 QUIET REQUIRED)
|
|
||||||
+ find_package(Python 2.7 QUIET REQUIRED COMPONENTS Interpreter)
|
|
||||||
# PYTHONINTERP_FOUND - Was the Python executable found
|
|
||||||
# PYTHON_EXECUTABLE - path to the Python interpreter
|
|
||||||
set_package_properties( PythonInterp PROPERTIES
|
|
||||||
@@ -25,8 +25,8 @@ macro( setupPython )
|
|
||||||
TYPE REQUIRED
|
|
||||||
PURPOSE "Required for running tests and accessing features that rely on matplotlib."
|
|
||||||
)
|
|
||||||
- if( PYTHONINTERP_FOUND )
|
|
||||||
- message( STATUS "Looking for Python....found ${PYTHON_EXECUTABLE}" )
|
|
||||||
+ if( Python_Interpreter_FOUND )
|
|
||||||
+ message( STATUS "Looking for Python....found ${Python_EXECUTABLE}" )
|
|
||||||
else()
|
|
||||||
message( STATUS "Looking for Python....not found" )
|
|
||||||
endif()
|
|
|
@ -88,8 +88,7 @@ class Draco(CMakePackage):
|
||||||
conflicts("+caliper", when="@:7.7")
|
conflicts("+caliper", when="@:7.7")
|
||||||
|
|
||||||
# Fix python discovery.
|
# Fix python discovery.
|
||||||
patch("d710.patch", when="@7.1.0^python@3:")
|
patch("d710.patch", when="@7.1.0")
|
||||||
patch("d710-python2.patch", when="@7.1.0^python@2.7:2")
|
|
||||||
patch("d730.patch", when="@7.3.0:7.3")
|
patch("d730.patch", when="@7.3.0:7.3")
|
||||||
patch("d740.patch", when="@7.4.0:7.4")
|
patch("d740.patch", when="@7.4.0:7.4")
|
||||||
patch("d750-intel17.patch", when="@7.5.0:7.6.99%intel@17.0.0:18.0.0")
|
patch("d750-intel17.patch", when="@7.5.0:7.6.99%intel@17.0.0:18.0.0")
|
||||||
|
|
|
@ -16,14 +16,12 @@ class Easybuild(PythonPackage):
|
||||||
maintainers = ["boegel"]
|
maintainers = ["boegel"]
|
||||||
|
|
||||||
version("4.0.0", sha256="21bcc1048525ad6219667cc97a7421b5388068c670cabba356712e474896de40")
|
version("4.0.0", sha256="21bcc1048525ad6219667cc97a7421b5388068c670cabba356712e474896de40")
|
||||||
version("3.1.2", sha256="a966a08e41d3557d7fd3dc5322180c006d27281d9ecc1b1fce1b4518c32664d4")
|
|
||||||
|
|
||||||
depends_on("python@2.6:2.8", when="@:3", type=("build", "run"))
|
|
||||||
depends_on("python@2.6:2.8,3.5:", when="@4:", type=("build", "run"))
|
depends_on("python@2.6:2.8,3.5:", when="@4:", type=("build", "run"))
|
||||||
# pip silently replaces distutils with setuptools
|
# pip silently replaces distutils with setuptools
|
||||||
depends_on("py-setuptools", type="build")
|
depends_on("py-setuptools", type="build")
|
||||||
|
|
||||||
for v in ["@4.0.0", "@3.1.2"]:
|
for v in ["@4.0.0"]:
|
||||||
depends_on("py-easybuild-framework" + v, when=v, type="run")
|
depends_on("py-easybuild-framework" + v, when=v, type="run")
|
||||||
depends_on("py-easybuild-easyblocks" + v, when=v, type="run")
|
depends_on("py-easybuild-easyblocks" + v, when=v, type="run")
|
||||||
depends_on("py-easybuild-easyconfigs" + v, when=v, type="run")
|
depends_on("py-easybuild-easyconfigs" + v, when=v, type="run")
|
||||||
|
|
|
@ -77,7 +77,6 @@ class Eccodes(CMakePackage):
|
||||||
variant(
|
variant(
|
||||||
"memfs", default=False, description="Enable memory based access to definitions/samples"
|
"memfs", default=False, description="Enable memory based access to definitions/samples"
|
||||||
)
|
)
|
||||||
variant("python", default=False, description="Enable the Python 2 interface")
|
|
||||||
variant("fortran", default=False, description="Enable the Fortran support")
|
variant("fortran", default=False, description="Enable the Fortran support")
|
||||||
variant("shared", default=True, description="Build shared versions of the libraries")
|
variant("shared", default=True, description="Build shared versions of the libraries")
|
||||||
|
|
||||||
|
@ -114,12 +113,6 @@ class Eccodes(CMakePackage):
|
||||||
depends_on("libaec", when="+aec")
|
depends_on("libaec", when="+aec")
|
||||||
# Can be built with Python 2 or Python 3.
|
# Can be built with Python 2 or Python 3.
|
||||||
depends_on("python", when="+memfs", type="build")
|
depends_on("python", when="+memfs", type="build")
|
||||||
# The interface is available only for Python 2.
|
|
||||||
# Python 3 interface is available as a separate packages:
|
|
||||||
# https://confluence.ecmwf.int/display/ECC/Python+3+interface+for+ecCodes
|
|
||||||
depends_on("python@2.6:2", when="+python", type=("build", "link", "run"))
|
|
||||||
depends_on("py-numpy", when="+python", type=("build", "run"))
|
|
||||||
extends("python", when="+python")
|
|
||||||
|
|
||||||
depends_on("cmake@3.6:", type="build")
|
depends_on("cmake@3.6:", type="build")
|
||||||
depends_on("cmake@3.12:", when="@2.19:", type="build")
|
depends_on("cmake@3.12:", when="@2.19:", type="build")
|
||||||
|
@ -149,7 +142,7 @@ class Eccodes(CMakePackage):
|
||||||
name=center,
|
name=center,
|
||||||
destination="spack-definitions",
|
destination="spack-definitions",
|
||||||
placement="definitions.{0}".format(center),
|
placement="definitions.{0}".format(center),
|
||||||
**kwargs
|
**kwargs,
|
||||||
)
|
)
|
||||||
|
|
||||||
# Enforce linking against the specified JPEG2000 backend, see also
|
# Enforce linking against the specified JPEG2000 backend, see also
|
||||||
|
@ -236,13 +229,13 @@ def patch(self):
|
||||||
r"(^\s*kind_of_double\s*=\s*)(\d{1,2})(\s*$)",
|
r"(^\s*kind_of_double\s*=\s*)(\d{1,2})(\s*$)",
|
||||||
"\\1kind(real\\2)\\3",
|
"\\1kind(real\\2)\\3",
|
||||||
"fortran/grib_types.f90",
|
"fortran/grib_types.f90",
|
||||||
**kwargs
|
**kwargs,
|
||||||
)
|
)
|
||||||
filter_file(
|
filter_file(
|
||||||
r"(^\s*kind_of_\w+\s*=\s*)(\d{1,2})(\s*$)",
|
r"(^\s*kind_of_\w+\s*=\s*)(\d{1,2})(\s*$)",
|
||||||
"\\1kind(x\\2)\\3",
|
"\\1kind(x\\2)\\3",
|
||||||
"fortran/grib_types.f90",
|
"fortran/grib_types.f90",
|
||||||
**kwargs
|
**kwargs,
|
||||||
)
|
)
|
||||||
|
|
||||||
# Replace integer kinds:
|
# Replace integer kinds:
|
||||||
|
@ -251,7 +244,7 @@ def patch(self):
|
||||||
r"(^\s*integer\((?:kind=)?){0}(\).*)".format(size),
|
r"(^\s*integer\((?:kind=)?){0}(\).*)".format(size),
|
||||||
"\\1selected_int_kind({0})\\2".format(r),
|
"\\1selected_int_kind({0})\\2".format(r),
|
||||||
*patch_kind_files,
|
*patch_kind_files,
|
||||||
**kwargs
|
**kwargs,
|
||||||
)
|
)
|
||||||
|
|
||||||
# Replace real kinds:
|
# Replace real kinds:
|
||||||
|
@ -260,7 +253,7 @@ def patch(self):
|
||||||
r"(^\s*real\((?:kind=)?){0}(\).*)".format(size),
|
r"(^\s*real\((?:kind=)?){0}(\).*)".format(size),
|
||||||
"\\1selected_real_kind({0}, {1})\\2".format(p, r),
|
"\\1selected_real_kind({0}, {1})\\2".format(p, r),
|
||||||
*patch_kind_files,
|
*patch_kind_files,
|
||||||
**kwargs
|
**kwargs,
|
||||||
)
|
)
|
||||||
|
|
||||||
# Enable getarg and exit subroutines:
|
# Enable getarg and exit subroutines:
|
||||||
|
@ -268,7 +261,7 @@ def patch(self):
|
||||||
r"(^\s*program\s+\w+)(\s*$)",
|
r"(^\s*program\s+\w+)(\s*$)",
|
||||||
"\\1; use f90_unix_env; use f90_unix_proc\\2",
|
"\\1; use f90_unix_env; use f90_unix_proc\\2",
|
||||||
*patch_unix_ext_files,
|
*patch_unix_ext_files,
|
||||||
**kwargs
|
**kwargs,
|
||||||
)
|
)
|
||||||
|
|
||||||
@property
|
@property
|
||||||
|
@ -332,9 +325,6 @@ def cmake_args(self):
|
||||||
self.define_from_variant("ENABLE_ECCODES_THREADS", "pthreads"),
|
self.define_from_variant("ENABLE_ECCODES_THREADS", "pthreads"),
|
||||||
self.define_from_variant("ENABLE_ECCODES_OMP_THREADS", "openmp"),
|
self.define_from_variant("ENABLE_ECCODES_OMP_THREADS", "openmp"),
|
||||||
self.define_from_variant("ENABLE_MEMFS", "memfs"),
|
self.define_from_variant("ENABLE_MEMFS", "memfs"),
|
||||||
self.define_from_variant(
|
|
||||||
"ENABLE_PYTHON{0}".format("2" if self.spec.satisfies("@2.20.0:") else ""), "python"
|
|
||||||
),
|
|
||||||
self.define_from_variant("ENABLE_FORTRAN", "fortran"),
|
self.define_from_variant("ENABLE_FORTRAN", "fortran"),
|
||||||
self.define("BUILD_SHARED_LIBS", "BOTH" if "+shared" in self.spec else "OFF"),
|
self.define("BUILD_SHARED_LIBS", "BOTH" if "+shared" in self.spec else "OFF"),
|
||||||
self.define("ENABLE_TESTS", self.run_tests),
|
self.define("ENABLE_TESTS", self.run_tests),
|
||||||
|
|
|
@ -156,7 +156,7 @@ class EcpDataVisSdk(BundlePackage, CudaPackage, ROCmPackage):
|
||||||
depends_on("py-cinemasci", when="+cinema")
|
depends_on("py-cinemasci", when="+cinema")
|
||||||
|
|
||||||
dav_sdk_depends_on(
|
dav_sdk_depends_on(
|
||||||
"paraview@5.10:+mpi+python3+kits+shared", when="+paraview", propagate=["hdf5", "adios2"]
|
"paraview@5.10:+mpi+python+kits+shared", when="+paraview", propagate=["hdf5", "adios2"]
|
||||||
)
|
)
|
||||||
# ParaView needs @5.11: in order to use cuda and be compatible with other
|
# ParaView needs @5.11: in order to use cuda and be compatible with other
|
||||||
# SDK packages.
|
# SDK packages.
|
||||||
|
|
|
@ -27,7 +27,6 @@ class Elemental(CMakePackage):
|
||||||
"openmp_blas", default=False, description="Use OpenMP for threading in the BLAS library"
|
"openmp_blas", default=False, description="Use OpenMP for threading in the BLAS library"
|
||||||
)
|
)
|
||||||
variant("c", default=False, description="Build C interface")
|
variant("c", default=False, description="Build C interface")
|
||||||
variant("python", default=False, description="Install Python interface")
|
|
||||||
variant("parmetis", default=False, description="Enable ParMETIS")
|
variant("parmetis", default=False, description="Enable ParMETIS")
|
||||||
variant("quad", default=False, description="Enable quad precision")
|
variant("quad", default=False, description="Enable quad precision")
|
||||||
variant("int64", default=False, description="Use 64bit integers")
|
variant("int64", default=False, description="Use 64bit integers")
|
||||||
|
@ -83,8 +82,6 @@ class Elemental(CMakePackage):
|
||||||
depends_on("mpi")
|
depends_on("mpi")
|
||||||
# Allow Elemental to build internally when using 8-byte ints
|
# Allow Elemental to build internally when using 8-byte ints
|
||||||
depends_on("scalapack", when="+scalapack ~int64_blas")
|
depends_on("scalapack", when="+scalapack ~int64_blas")
|
||||||
extends("python", when="+python")
|
|
||||||
depends_on("python@:2.8", when="+python")
|
|
||||||
depends_on("gmp", when="+mpfr")
|
depends_on("gmp", when="+mpfr")
|
||||||
depends_on("mpc", when="+mpfr")
|
depends_on("mpc", when="+mpfr")
|
||||||
depends_on("mpfr", when="+mpfr")
|
depends_on("mpfr", when="+mpfr")
|
||||||
|
@ -117,7 +114,6 @@ def cmake_args(self):
|
||||||
"-DBUILD_SHARED_LIBS:BOOL=%s" % ("+shared" in spec),
|
"-DBUILD_SHARED_LIBS:BOOL=%s" % ("+shared" in spec),
|
||||||
"-DEL_HYBRID:BOOL=%s" % ("+hybrid" in spec),
|
"-DEL_HYBRID:BOOL=%s" % ("+hybrid" in spec),
|
||||||
"-DEL_C_INTERFACE:BOOL=%s" % ("+c" in spec),
|
"-DEL_C_INTERFACE:BOOL=%s" % ("+c" in spec),
|
||||||
"-DINSTALL_PYTHON_PACKAGE:BOOL=%s" % ("+python" in spec),
|
|
||||||
"-DEL_DISABLE_PARMETIS:BOOL=%s" % ("~parmetis" in spec),
|
"-DEL_DISABLE_PARMETIS:BOOL=%s" % ("~parmetis" in spec),
|
||||||
"-DEL_DISABLE_QUAD:BOOL=%s" % ("~quad" in spec),
|
"-DEL_DISABLE_QUAD:BOOL=%s" % ("~quad" in spec),
|
||||||
"-DEL_USE_64BIT_INTS:BOOL=%s" % ("+int64" in spec),
|
"-DEL_USE_64BIT_INTS:BOOL=%s" % ("+int64" in spec),
|
||||||
|
@ -175,7 +171,4 @@ def cmake_args(self):
|
||||||
|
|
||||||
args.extend(["-DMATH_LIBS:STRING={0}".format(math_libs.ld_flags)])
|
args.extend(["-DMATH_LIBS:STRING={0}".format(math_libs.ld_flags)])
|
||||||
|
|
||||||
if "+python" in spec:
|
|
||||||
args.extend(["-DPYTHON_SITE_PACKAGES:STRING={0}".format(python_platlib)])
|
|
||||||
|
|
||||||
return args
|
return args
|
||||||
|
|
|
@ -24,47 +24,6 @@ class Elpa(AutotoolsPackage, CudaPackage, ROCmPackage):
|
||||||
version(
|
version(
|
||||||
"2021.05.001", sha256="a4f1a4e3964f2473a5f8177f2091a9da5c6b5ef9280b8272dfefcbc3aad44d41"
|
"2021.05.001", sha256="a4f1a4e3964f2473a5f8177f2091a9da5c6b5ef9280b8272dfefcbc3aad44d41"
|
||||||
)
|
)
|
||||||
version(
|
|
||||||
"2020.05.001", sha256="66ff1cf332ce1c82075dc7b5587ae72511d2bcb3a45322c94af6b01996439ce5"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2019.11.001", sha256="10374a8f042e23c7e1094230f7e2993b6f3580908a213dbdf089792d05aff357"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2019.05.002", sha256="d2eab5e5d74f53601220b00d18185670da8c00c13e1c1559ecfb0cd7cb2c4e8d"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2018.11.001", sha256="cc27fe8ba46ce6e6faa8aea02c8c9983052f8e73a00cfea38abf7613cb1e1b16"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2018.05.001.rc1",
|
|
||||||
sha256="598c01da20600a4514ea4d503b93e977ac0367e797cab7a7c1b0e0e3e86490db",
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2017.11.001", sha256="59f99c3abe2190fac0db8a301d0b9581ee134f438669dbc92551a54f6f861820"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2017.05.003", sha256="bccd49ce35a323bd734b17642aed8f2588fea4cc78ee8133d88554753bc3bf1b"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2017.05.002", sha256="568b71024c094d667b5cbb23045ad197ed5434071152ac608dae490ace5eb0aa"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2017.05.001", sha256="28f7edad60984d93da299016ad33571dc6db1cdc9fab0ceaef05dc07de2c7dfd"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2016.11.001.pre",
|
|
||||||
sha256="69b67f0f6faaa2b3b5fd848127b632be32771636d2ad04583c5269d550956f92",
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2016.05.004", sha256="08c59dc9da458bab856f489d779152e5506e04f0d4b8d6dcf114ca5fbbe46c58"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2016.05.003", sha256="c8da50c987351514e61491e14390cdea4bdbf5b09045261991876ed5b433fca4"
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"2015.11.001", sha256="c0761a92a31c08a4009c9688c85fc3fc8fde9b6ce05e514c3e1587cf045e9eba"
|
|
||||||
)
|
|
||||||
|
|
||||||
variant("openmp", default=True, description="Activates OpenMP support")
|
variant("openmp", default=True, description="Activates OpenMP support")
|
||||||
variant("mpi", default=True, description="Activates MPI support")
|
variant("mpi", default=True, description="Activates MPI support")
|
||||||
|
@ -75,8 +34,7 @@ class Elpa(AutotoolsPackage, CudaPackage, ROCmPackage):
|
||||||
depends_on("scalapack", when="+mpi")
|
depends_on("scalapack", when="+mpi")
|
||||||
depends_on("rocblas", when="+rocm")
|
depends_on("rocblas", when="+rocm")
|
||||||
depends_on("libtool", type="build")
|
depends_on("libtool", type="build")
|
||||||
depends_on("python@:2", type="build", when="@:2020.05.001")
|
depends_on("python@3:", type="build")
|
||||||
depends_on("python@3:", type="build", when="@2020.11.001:")
|
|
||||||
|
|
||||||
with when("@2021.11.01:"):
|
with when("@2021.11.01:"):
|
||||||
variant(
|
variant(
|
||||||
|
@ -84,15 +42,12 @@ class Elpa(AutotoolsPackage, CudaPackage, ROCmPackage):
|
||||||
)
|
)
|
||||||
depends_on("scalapack", when="+autotune")
|
depends_on("scalapack", when="+autotune")
|
||||||
|
|
||||||
patch("python_shebang.patch", when="@:2020.05.001")
|
|
||||||
|
|
||||||
# fails to build due to broken type-bound procedures in OMP parallel regions
|
# fails to build due to broken type-bound procedures in OMP parallel regions
|
||||||
conflicts(
|
conflicts(
|
||||||
"+openmp",
|
"+openmp",
|
||||||
when="@2021.05.001: %gcc@:7",
|
when="@2021.05.001: %gcc@:7",
|
||||||
msg="ELPA-2021.05.001+ requires GCC-8+ for OpenMP support",
|
msg="ELPA-2021.05.001+ requires GCC-8+ for OpenMP support",
|
||||||
)
|
)
|
||||||
conflicts("+rocm", when="@:2020", msg="ROCm support was introduced in ELPA 2021.05.001")
|
|
||||||
conflicts("+mpi", when="+rocm", msg="ROCm support and MPI are not yet compatible")
|
conflicts("+mpi", when="+rocm", msg="ROCm support and MPI are not yet compatible")
|
||||||
|
|
||||||
def url_for_version(self, version):
|
def url_for_version(self, version):
|
||||||
|
@ -158,11 +113,6 @@ def configure_args(self):
|
||||||
gcc_options = []
|
gcc_options = []
|
||||||
gfortran_options = ["-ffree-line-length-none"]
|
gfortran_options = ["-ffree-line-length-none"]
|
||||||
|
|
||||||
if self.compiler.version >= Version("10.0.0") and spec.version <= Version(
|
|
||||||
"2019.11.001"
|
|
||||||
):
|
|
||||||
gfortran_options.append("-fallow-argument-mismatch")
|
|
||||||
|
|
||||||
space_separator = " "
|
space_separator = " "
|
||||||
options.extend(
|
options.extend(
|
||||||
[
|
[
|
||||||
|
@ -174,7 +124,7 @@ def configure_args(self):
|
||||||
if "%aocc" in spec:
|
if "%aocc" in spec:
|
||||||
options.extend(["FCFLAGS=-O3", "CFLAGS=-O3"])
|
options.extend(["FCFLAGS=-O3", "CFLAGS=-O3"])
|
||||||
|
|
||||||
cuda_flag = "nvidia-gpu" if "@2021.05.001:" in self.spec else "gpu"
|
cuda_flag = "nvidia-gpu"
|
||||||
if "+cuda" in spec:
|
if "+cuda" in spec:
|
||||||
prefix = spec["cuda"].prefix
|
prefix = spec["cuda"].prefix
|
||||||
options.append("--enable-{0}".format(cuda_flag))
|
options.append("--enable-{0}".format(cuda_flag))
|
||||||
|
|
|
@ -1,8 +0,0 @@
|
||||||
--- a/manual_cpp 2021-01-27 20:21:23.897206207 +0100
|
|
||||||
+++ b/manual_cpp 2021-01-27 20:13:08.743822289 +0100
|
|
||||||
@@ -1,4 +1,4 @@
|
|
||||||
-#!/usr/bin/python
|
|
||||||
+#!/usr/bin/env python
|
|
||||||
from __future__ import print_function
|
|
||||||
import os
|
|
||||||
import sys
|
|
|
@ -1,34 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class FindCirc(Package):
|
|
||||||
"""Find-circ is a collection of python scripts
|
|
||||||
detecting head-to-tail spliced (back-spliced) sequencing reads,
|
|
||||||
indicative of circular RNA (circRNA) in RNA-seq data."""
|
|
||||||
|
|
||||||
homepage = "https://github.com/marvin-jens/find_circ"
|
|
||||||
url = "https://github.com/marvin-jens/find_circ/archive/v1.2.tar.gz"
|
|
||||||
|
|
||||||
version("1.2", sha256="f88bf9b5d0cc818313074982d4460c96706f555d924e2821832c3d03bf67743e")
|
|
||||||
|
|
||||||
depends_on("python@2.7:2.8", type=("build", "run"))
|
|
||||||
depends_on("py-pysam", type=("build", "run"))
|
|
||||||
# Higher version of py-pandas and py-numpy
|
|
||||||
# depends on python@3: which conflicts with py-rnacocktail
|
|
||||||
depends_on("py-numpy@:1.16.5", type=("build", "run"))
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
mkdir(prefix.bin)
|
|
||||||
install("cmp_bed.py", prefix.bin)
|
|
||||||
install("find_circ.py", prefix.bin)
|
|
||||||
install("maxlength.py", prefix.bin)
|
|
||||||
install("unmapped2anchors.py", prefix.bin)
|
|
||||||
install("README.md", prefix)
|
|
||||||
install("README.pdf", prefix)
|
|
||||||
install("LICENSE", prefix)
|
|
||||||
install_tree("test_data", prefix.test_data)
|
|
|
@ -128,10 +128,7 @@ def build(self, spec, prefix):
|
||||||
|
|
||||||
# build python
|
# build python
|
||||||
with working_dir("PYTHON"):
|
with working_dir("PYTHON"):
|
||||||
if "^python@:2" in self.spec:
|
make("python3")
|
||||||
make()
|
|
||||||
else:
|
|
||||||
make("python3")
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
def install(self, spec, prefix):
|
||||||
with working_dir(self.stage.source_path):
|
with working_dir(self.stage.source_path):
|
||||||
|
|
|
@ -1,35 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Ganglia(AutotoolsPackage):
|
|
||||||
"""Ganglia is a scalable distributed monitoring system for high-performance
|
|
||||||
computing systems such as clusters and Grids. It is based on a hierarchical
|
|
||||||
design targeted at federations of clusters. Supports clusters up to 2000
|
|
||||||
nodes in size."""
|
|
||||||
|
|
||||||
homepage = "http://ganglia.sourceforge.net/"
|
|
||||||
url = "https://jaist.dl.sourceforge.net/project/ganglia/ganglia%20monitoring%20core/3.7.2/ganglia-3.7.2.tar.gz"
|
|
||||||
list_url = "http://jaist.dl.sourceforge.net/project/ganglia/ganglia%20monitoring%20core"
|
|
||||||
list_depth = 1
|
|
||||||
|
|
||||||
version("3.7.2", sha256="042dbcaf580a661b55ae4d9f9b3566230b2232169a0898e91a797a4c61888409")
|
|
||||||
|
|
||||||
depends_on("m4", type="build")
|
|
||||||
depends_on("autoconf", type="build")
|
|
||||||
depends_on("automake", type="build")
|
|
||||||
depends_on("libtool", type="build")
|
|
||||||
depends_on("apr")
|
|
||||||
depends_on("libconfuse")
|
|
||||||
depends_on("python@:2.7")
|
|
||||||
depends_on("pcre")
|
|
||||||
depends_on("libtirpc")
|
|
||||||
depends_on("expat")
|
|
||||||
|
|
||||||
def setup_build_environment(self, env):
|
|
||||||
env.prepend_path("CPATH", self.spec["libtirpc"].prefix.include.tirpc)
|
|
||||||
env.append_flags("LDFLAGS", "-ltirpc")
|
|
|
@ -31,8 +31,6 @@ class Gaudi(CMakePackage):
|
||||||
version("33.1", sha256="7eb6b2af64aeb965228d4b6ea66c7f9f57f832f93d5b8ad55c9105235af5b042")
|
version("33.1", sha256="7eb6b2af64aeb965228d4b6ea66c7f9f57f832f93d5b8ad55c9105235af5b042")
|
||||||
version("33.0", sha256="76a967c41f579acc432593d498875dd4dc1f8afd5061e692741a355a9cf233c8")
|
version("33.0", sha256="76a967c41f579acc432593d498875dd4dc1f8afd5061e692741a355a9cf233c8")
|
||||||
version("32.2", sha256="e9ef3eb57fd9ac7b9d5647e278a84b2e6263f29f0b14dbe1321667d44d969d2e")
|
version("32.2", sha256="e9ef3eb57fd9ac7b9d5647e278a84b2e6263f29f0b14dbe1321667d44d969d2e")
|
||||||
version("31.0", commit="aeb156f0c40571b5753a9e1dab31e331491b2f3e")
|
|
||||||
version("30.5", commit="2c70e73ee5b543b26197b90dd59ea4e4d359d230")
|
|
||||||
|
|
||||||
maintainers = ["drbenmorgan", "vvolkl"]
|
maintainers = ["drbenmorgan", "vvolkl"]
|
||||||
|
|
||||||
|
@ -71,10 +69,7 @@ class Gaudi(CMakePackage):
|
||||||
depends_on("nlohmann-json", when="@35.0:")
|
depends_on("nlohmann-json", when="@35.0:")
|
||||||
depends_on("python", type=("build", "run"))
|
depends_on("python", type=("build", "run"))
|
||||||
depends_on("python@:3.7", when="@32.2:34", type=("build", "run"))
|
depends_on("python@:3.7", when="@32.2:34", type=("build", "run"))
|
||||||
depends_on("python@:2", when="@:32.1", type=("build", "run"))
|
depends_on("py-networkx", type=("build", "run"))
|
||||||
depends_on("py-networkx@:2.2", when="^python@:2.7")
|
|
||||||
depends_on("py-networkx", when="^python@3.0.0:")
|
|
||||||
depends_on("py-setuptools@:45", when="^python@:2.7", type="build")
|
|
||||||
depends_on("py-six", type=("build", "run"))
|
depends_on("py-six", type=("build", "run"))
|
||||||
depends_on("py-xenv@1:", when="@:34.9", type=("build", "run"))
|
depends_on("py-xenv@1:", when="@:34.9", type=("build", "run"))
|
||||||
depends_on("range-v3")
|
depends_on("range-v3")
|
||||||
|
|
|
@ -37,7 +37,7 @@ class Gdb(AutotoolsPackage, GNUMirrorPackage):
|
||||||
version("7.11.1", sha256="57e9e9aa3172ee16aa1e9c66fef08b4393b51872cc153e3f1ffdf18a57440586")
|
version("7.11.1", sha256="57e9e9aa3172ee16aa1e9c66fef08b4393b51872cc153e3f1ffdf18a57440586")
|
||||||
version("7.10.1", sha256="ff14f8050e6484508c73cbfa63731e57901478490ca1672dc0b5e2b03f6af622")
|
version("7.10.1", sha256="ff14f8050e6484508c73cbfa63731e57901478490ca1672dc0b5e2b03f6af622")
|
||||||
|
|
||||||
variant("python", default=True, description="Compile with Python support")
|
variant("python", default=True, description="Compile with Python support", when="@8.2:")
|
||||||
variant("xz", default=True, description="Compile with lzma support")
|
variant("xz", default=True, description="Compile with lzma support")
|
||||||
variant("source-highlight", default=False, description="Compile with source-highlight support")
|
variant("source-highlight", default=False, description="Compile with source-highlight support")
|
||||||
variant("lto", default=False, description="Enable lto")
|
variant("lto", default=False, description="Enable lto")
|
||||||
|
@ -73,7 +73,6 @@ class Gdb(AutotoolsPackage, GNUMirrorPackage):
|
||||||
|
|
||||||
# Optional dependencies
|
# Optional dependencies
|
||||||
depends_on("python", when="+python", type=("build", "link", "run"))
|
depends_on("python", when="+python", type=("build", "link", "run"))
|
||||||
depends_on("python@:3.6", when="@:8.1+python", type=("build", "link", "run"))
|
|
||||||
# gdb@9.2 will segmentation fault if it builds with python@3.9.
|
# gdb@9.2 will segmentation fault if it builds with python@3.9.
|
||||||
# https://bugzilla.redhat.com/show_bug.cgi?id=1829702
|
# https://bugzilla.redhat.com/show_bug.cgi?id=1829702
|
||||||
depends_on("python@:3.8", when="@:9.2+python", type=("build", "link", "run"))
|
depends_on("python@:3.8", when="@:9.2+python", type=("build", "link", "run"))
|
||||||
|
|
|
@ -26,7 +26,6 @@ class Gdl(CMakePackage):
|
||||||
variant("hdf5", default=True, description="Enable HDF5")
|
variant("hdf5", default=True, description="Enable HDF5")
|
||||||
variant("openmp", default=True, description="Enable OpenMP")
|
variant("openmp", default=True, description="Enable OpenMP")
|
||||||
variant("proj", default=True, description="Enable LIBPROJ4")
|
variant("proj", default=True, description="Enable LIBPROJ4")
|
||||||
variant("embed_python", default=False, description="Ability to embed Python within GDL")
|
|
||||||
variant("python", default=False, description="Build the GDL Python module")
|
variant("python", default=False, description="Build the GDL Python module")
|
||||||
variant("wx", default=False, description="Enable WxWidgets")
|
variant("wx", default=False, description="Enable WxWidgets")
|
||||||
variant("x11", default=False, description="Enable X11")
|
variant("x11", default=False, description="Enable X11")
|
||||||
|
@ -44,8 +43,6 @@ class Gdl(CMakePackage):
|
||||||
# Too many dependencies to test if GDL supports PROJ.6,
|
# Too many dependencies to test if GDL supports PROJ.6,
|
||||||
# so restricting to old API
|
# so restricting to old API
|
||||||
depends_on("proj@:5", when="+proj")
|
depends_on("proj@:5", when="+proj")
|
||||||
depends_on("py-numpy", type=("build", "run"), when="+embed_python")
|
|
||||||
depends_on("python@2.7:2.8", type=("build", "run"), when="+embed_python")
|
|
||||||
depends_on("wxwidgets", when="+wx")
|
depends_on("wxwidgets", when="+wx")
|
||||||
|
|
||||||
depends_on("eigen")
|
depends_on("eigen")
|
||||||
|
@ -62,8 +59,6 @@ class Gdl(CMakePackage):
|
||||||
depends_on("libtirpc", type="link")
|
depends_on("libtirpc", type="link")
|
||||||
depends_on("libgeotiff", type="link")
|
depends_on("libgeotiff", type="link")
|
||||||
|
|
||||||
conflicts("+python", when="~embed_python")
|
|
||||||
|
|
||||||
# Building the Python module requires patches currently targetting 0.9.8
|
# Building the Python module requires patches currently targetting 0.9.8
|
||||||
# othwerwise asking for the Python module *only* builds the Python module
|
# othwerwise asking for the Python module *only* builds the Python module
|
||||||
conflicts("+python", when="@:0.9.7,0.9.9:")
|
conflicts("+python", when="@:0.9.7,0.9.9:")
|
||||||
|
@ -113,11 +108,6 @@ def cmake_args(self):
|
||||||
else:
|
else:
|
||||||
args += ["-DLIBPROJ4=OFF"]
|
args += ["-DLIBPROJ4=OFF"]
|
||||||
|
|
||||||
if "+embed_python" in self.spec:
|
|
||||||
args += ["-DPYTHON=ON"]
|
|
||||||
else:
|
|
||||||
args += ["-DPYTHON=OFF"]
|
|
||||||
|
|
||||||
if "+python" in self.spec:
|
if "+python" in self.spec:
|
||||||
args += ["-DPYTHON_MODULE=ON"]
|
args += ["-DPYTHON_MODULE=ON"]
|
||||||
else:
|
else:
|
||||||
|
|
|
@ -17,7 +17,6 @@ class Genesis(AutotoolsPackage, CudaPackage):
|
||||||
url = "https://www.r-ccs.riken.jp/labs/cbrt/wp-content/uploads/2020/09/genesis-1.5.1.tar.bz2"
|
url = "https://www.r-ccs.riken.jp/labs/cbrt/wp-content/uploads/2020/09/genesis-1.5.1.tar.bz2"
|
||||||
git = "https://github.com/genesis-release-r-ccs/genesis-2.0.git"
|
git = "https://github.com/genesis-release-r-ccs/genesis-2.0.git"
|
||||||
|
|
||||||
version("master", branch="master")
|
|
||||||
version(
|
version(
|
||||||
"1.6.0",
|
"1.6.0",
|
||||||
sha256="d0185a5464ed4231f6ee81f6dcaa15935a99fa30b96658d2b7c25d7fbc5b38e9",
|
sha256="d0185a5464ed4231f6ee81f6dcaa15935a99fa30b96658d2b7c25d7fbc5b38e9",
|
||||||
|
@ -63,7 +62,6 @@ class Genesis(AutotoolsPackage, CudaPackage):
|
||||||
|
|
||||||
depends_on("mpi", type=("build", "run"))
|
depends_on("mpi", type=("build", "run"))
|
||||||
depends_on("lapack")
|
depends_on("lapack")
|
||||||
depends_on("python@2.6.9:2.8.0", type=("build", "run"), when="@master")
|
|
||||||
|
|
||||||
patch("fj_compiler.patch", when="@master %fj")
|
patch("fj_compiler.patch", when="@master %fj")
|
||||||
patch("fj_compiler_1.5.1.patch", when="@1.5.1 %fj")
|
patch("fj_compiler_1.5.1.patch", when="@1.5.1 %fj")
|
||||||
|
@ -115,24 +113,3 @@ def cache_test_sources(self):
|
||||||
"""Copy test files after the package is installed for test()."""
|
"""Copy test files after the package is installed for test()."""
|
||||||
if self.spec.satisfies("@master"):
|
if self.spec.satisfies("@master"):
|
||||||
self.cache_extra_test_sources(["tests"])
|
self.cache_extra_test_sources(["tests"])
|
||||||
|
|
||||||
def test(self):
|
|
||||||
"""Perform stand-alone/smoke tests using installed package."""
|
|
||||||
if not self.spec.satisfies("@master"):
|
|
||||||
print("Skipping: Tests are only available for the master branch")
|
|
||||||
return
|
|
||||||
|
|
||||||
test_name = join_path(self.cached_tests_work_dir, "regression_test", "test.py")
|
|
||||||
bin_name = join_path(self.prefix.bin, "spdyn")
|
|
||||||
opts = [
|
|
||||||
test_name,
|
|
||||||
self.spec["mpi"].prefix.bin.mpirun + " -np 8 " + bin_name,
|
|
||||||
]
|
|
||||||
env["OMP_NUM_THREADS"] = "1"
|
|
||||||
self.run_test(
|
|
||||||
self.spec["python"].command.path,
|
|
||||||
options=opts,
|
|
||||||
expected="Passed 53 / 53",
|
|
||||||
purpose="test: running regression test",
|
|
||||||
work_dir=self.cached_tests_work_dir,
|
|
||||||
)
|
|
||||||
|
|
|
@ -31,7 +31,6 @@ class GitImerge(MakefilePackage):
|
||||||
version("1.0.0", sha256="2ef3a49a6d54c4248ef2541efc3c860824fc8295a7226760f24f0bb2c5dd41f2")
|
version("1.0.0", sha256="2ef3a49a6d54c4248ef2541efc3c860824fc8295a7226760f24f0bb2c5dd41f2")
|
||||||
|
|
||||||
depends_on("python@2.6:")
|
depends_on("python@2.6:")
|
||||||
depends_on("py-argparse", when="^python@:2.6,3.0:3.1")
|
|
||||||
depends_on("git")
|
depends_on("git")
|
||||||
|
|
||||||
# Package copies a Python script and bash-completion files, so
|
# Package copies a Python script and bash-completion files, so
|
||||||
|
|
|
@ -1,51 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Gpdb(AutotoolsPackage):
|
|
||||||
"""
|
|
||||||
Greenplum Database (GPDB) is an advanced, fully featured, open source
|
|
||||||
data warehouse, based on PostgreSQL. It provides powerful and rapid
|
|
||||||
analytics on petabyte scale data volumes. Uniquely geared toward big
|
|
||||||
data analytics, Greenplum Database is powered by the world's most
|
|
||||||
advanced cost-based query optimizer delivering high analytical query
|
|
||||||
performance on large data volumes.
|
|
||||||
"""
|
|
||||||
|
|
||||||
homepage = "https://github.com/greenplum-db/gpdb"
|
|
||||||
url = "https://github.com/greenplum-db/gpdb/archive/6.2.1.tar.gz"
|
|
||||||
|
|
||||||
version("6.2.1", sha256="60c81d71665d623ea98a0e9bd8e6df7fecf6b30eb60a5881ccef781ff5214438")
|
|
||||||
version("6.1.0", sha256="81fa854b0ac5fe4e0de5fdee9a7b7c2514e1ea1feefa4e4d10518538a5c5b2a8")
|
|
||||||
version("6.0.1", sha256="8902f5d64386447f61c25686f283a785858760e0dcf9a049266db058d3597156")
|
|
||||||
version("6.0.0", sha256="8514140bee9db514d18a769034562e7f3464f74828595903a64dbf3d175ab71a")
|
|
||||||
version("5.24.0", sha256="4ea5cfcc20f149669bb3713378158e15b5c5949b367351a0f497ba1602d61fc1")
|
|
||||||
version("5.23.0", sha256="b06a797eb941362d5473b84d5def349b5ce12ce87ab116bea7c74ad193738ae9")
|
|
||||||
|
|
||||||
depends_on("zstd")
|
|
||||||
depends_on("py-setuptools@:44")
|
|
||||||
depends_on("apr")
|
|
||||||
depends_on("libevent")
|
|
||||||
depends_on("curl")
|
|
||||||
depends_on("xerces-c")
|
|
||||||
depends_on("bison", type="build")
|
|
||||||
depends_on("libxml2")
|
|
||||||
depends_on("flex")
|
|
||||||
depends_on("readline")
|
|
||||||
depends_on("py-subprocess32", type=("build", "run"))
|
|
||||||
depends_on("python@:2.8.0", type=("build", "run"))
|
|
||||||
depends_on("py-lockfile", type=("build", "run"))
|
|
||||||
depends_on("py-psutil", type=("build", "run"))
|
|
||||||
depends_on("py-utils@:1.0.0", type=("build", "run"))
|
|
||||||
|
|
||||||
def configure_args(self):
|
|
||||||
args = ["--with-python", "--disable-orca", "--enable-depend", "--with-libxml"]
|
|
||||||
return args
|
|
||||||
|
|
||||||
def setup_run_environment(self, env):
|
|
||||||
env.append_path("GPHOME", self.prefix)
|
|
||||||
env.append_path("PYTHONPATH", self.prefix.lib.python)
|
|
|
@ -21,7 +21,6 @@ class Gplates(CMakePackage):
|
||||||
manual_download = True
|
manual_download = True
|
||||||
|
|
||||||
version("2.3.0", sha256="7d4be9d524d1fcbb6a81de29bd1d4b13133082db23f0808965c5efe30e9538ab")
|
version("2.3.0", sha256="7d4be9d524d1fcbb6a81de29bd1d4b13133082db23f0808965c5efe30e9538ab")
|
||||||
version("2.1.0", sha256="5a52242520d7e243c541e164c8417b23f4e17fcd79ed81f865b2c13628bb0e07")
|
|
||||||
|
|
||||||
depends_on("cmake@3.5:", when="@2.3:", type="build")
|
depends_on("cmake@3.5:", when="@2.3:", type="build")
|
||||||
depends_on("cmake@2.8.8:", when="@2.1", type="build")
|
depends_on("cmake@2.8.8:", when="@2.1", type="build")
|
||||||
|
@ -31,7 +30,6 @@ class Gplates(CMakePackage):
|
||||||
depends_on("glu")
|
depends_on("glu")
|
||||||
depends_on("glew")
|
depends_on("glew")
|
||||||
depends_on("python@2:3", when="@2.3:")
|
depends_on("python@2:3", when="@2.3:")
|
||||||
depends_on("python@2", when="@:2.1")
|
|
||||||
depends_on("boost@1.35:1.75+program_options+python+system+thread", when="@2.3:")
|
depends_on("boost@1.35:1.75+program_options+python+system+thread", when="@2.3:")
|
||||||
# Boost's Python library has a different name starting with 1.67.
|
# Boost's Python library has a different name starting with 1.67.
|
||||||
depends_on("boost@1.34:1.66+program_options+python+system+thread", when="@2.1")
|
depends_on("boost@1.34:1.66+program_options+python+system+thread", when="@2.1")
|
||||||
|
|
|
@ -25,12 +25,6 @@ class Grass(AutotoolsPackage):
|
||||||
version("7.8.2", sha256="33576f7078f805b39ca20c2fa416ac79c64260c0581072a6dc7d813f53aa9abb")
|
version("7.8.2", sha256="33576f7078f805b39ca20c2fa416ac79c64260c0581072a6dc7d813f53aa9abb")
|
||||||
version("7.8.1", sha256="6ae578fd67afcce7abec4ba4505dcc55b3d2dfe0ca46b99d966cb148c654abb3")
|
version("7.8.1", sha256="6ae578fd67afcce7abec4ba4505dcc55b3d2dfe0ca46b99d966cb148c654abb3")
|
||||||
version("7.8.0", sha256="4b1192294e959ffd962282344e4ff325c4472f73abe605e246a1da3beda7ccfa")
|
version("7.8.0", sha256="4b1192294e959ffd962282344e4ff325c4472f73abe605e246a1da3beda7ccfa")
|
||||||
version("7.6.1", sha256="9e25c99cafd16ed8f5e2dca75b5a10dc2af0568dbedf3fc39f1c5a0a9c840b0b")
|
|
||||||
version("7.4.4", sha256="96a39e273103f7375a670eba94fa3e5dad2819c5c5664c9aee8f145882a94e8c")
|
|
||||||
version("7.4.3", sha256="004e65693ee97fd4d5dc7ad244e3286a115dccd88964d04be61c07db6574b399")
|
|
||||||
version("7.4.2", sha256="18eb19bc0aa4cd7be3f30f79ac83f9d0a29c63657f4c1b05bf4c5d5d57a8f46d")
|
|
||||||
version("7.4.1", sha256="560b8669caaafa9e8dbd4bbf2b4b4bbab7dca1cc46ee828eaf26c744fe0635fc")
|
|
||||||
version("7.4.0", sha256="cb6fa188e030a3a447fc5451fbe0ecbeb4069ee2fd1bf52ed8e40e9b89e293cc")
|
|
||||||
|
|
||||||
variant("cxx", default=True, description="Support C++ functionality")
|
variant("cxx", default=True, description="Support C++ functionality")
|
||||||
variant("tiff", default=False, description="Support TIFF functionality")
|
variant("tiff", default=False, description="Support TIFF functionality")
|
||||||
|
@ -67,7 +61,6 @@ class Grass(AutotoolsPackage):
|
||||||
depends_on("flex", type="build")
|
depends_on("flex", type="build")
|
||||||
depends_on("bison", type="build")
|
depends_on("bison", type="build")
|
||||||
depends_on("proj")
|
depends_on("proj")
|
||||||
depends_on("proj@:4", when="@:7.5")
|
|
||||||
# GRASS 7.8.0 was supposed to support PROJ 6, but it still checks for
|
# GRASS 7.8.0 was supposed to support PROJ 6, but it still checks for
|
||||||
# share/proj/epsg, which was removed in PROJ 6
|
# share/proj/epsg, which was removed in PROJ 6
|
||||||
depends_on("proj@:5", when="@:7.8.0")
|
depends_on("proj@:5", when="@:7.8.0")
|
||||||
|
@ -75,7 +68,6 @@ class Grass(AutotoolsPackage):
|
||||||
# https://courses.neteler.org/grass-gis-7-8-1-released-with-proj-6-and-gdal-3-support/
|
# https://courses.neteler.org/grass-gis-7-8-1-released-with-proj-6-and-gdal-3-support/
|
||||||
depends_on("proj@6:", when="@7.8.1:")
|
depends_on("proj@6:", when="@7.8.1:")
|
||||||
depends_on("python@2.7:", type=("build", "run"))
|
depends_on("python@2.7:", type=("build", "run"))
|
||||||
depends_on("python@2.7:2.8", when="@:7.6", type=("build", "run"))
|
|
||||||
depends_on("py-six", when="@7.8:", type=("build", "run"))
|
depends_on("py-six", when="@7.8:", type=("build", "run"))
|
||||||
|
|
||||||
# Optional packages
|
# Optional packages
|
||||||
|
|
|
@ -1,12 +0,0 @@
|
||||||
--- a/python/CMakeLists.txt
|
|
||||||
+++ b/python/CMakeLists.txt
|
|
||||||
@@ -6,7 +6,8 @@ if( HAVE_PYTHON )
|
|
||||||
#endif()
|
|
||||||
|
|
||||||
# check for Numpy
|
|
||||||
- find_package( NumPy )
|
|
||||||
+ # find_package( NumPy )
|
|
||||||
+ set(NUMPY_FOUND FALSE)
|
|
||||||
|
|
||||||
###############################################################################
|
|
||||||
# swig python interface
|
|
|
@ -55,8 +55,6 @@ class GribApi(CMakePackage):
|
||||||
)
|
)
|
||||||
variant("pthreads", default=False, description="Enable POSIX threads")
|
variant("pthreads", default=False, description="Enable POSIX threads")
|
||||||
variant("openmp", default=False, description="Enable OpenMP threads")
|
variant("openmp", default=False, description="Enable OpenMP threads")
|
||||||
variant("python", default=False, description="Enable the Python interface")
|
|
||||||
variant("numpy", default=False, description="Enable numpy support in the Python interface")
|
|
||||||
variant("fortran", default=False, description="Enable the Fortran support")
|
variant("fortran", default=False, description="Enable the Fortran support")
|
||||||
variant(
|
variant(
|
||||||
"examples", default=True, description="Build the examples (part of the full test suite)"
|
"examples", default=True, description="Build the examples (part of the full test suite)"
|
||||||
|
@ -78,24 +76,13 @@ class GribApi(CMakePackage):
|
||||||
depends_on("jasper", when="jp2k=jasper")
|
depends_on("jasper", when="jp2k=jasper")
|
||||||
depends_on("libpng", when="+png")
|
depends_on("libpng", when="+png")
|
||||||
depends_on("libaec", when="+aec")
|
depends_on("libaec", when="+aec")
|
||||||
depends_on("python@2.5:2", when="+python", type=("build", "link", "run"))
|
|
||||||
depends_on("py-numpy", when="+python+numpy", type=("build", "run"))
|
|
||||||
extends("python", when="+python")
|
|
||||||
|
|
||||||
conflicts("+openmp", when="+pthreads", msg="Cannot enable both POSIX threads and OMP")
|
conflicts("+openmp", when="+pthreads", msg="Cannot enable both POSIX threads and OMP")
|
||||||
conflicts(
|
|
||||||
"+numpy",
|
|
||||||
when="~python",
|
|
||||||
msg="Numpy variant is valid only when the Python interface is " "enabled",
|
|
||||||
)
|
|
||||||
|
|
||||||
# The following enforces linking against the specified JPEG2000 backend.
|
# The following enforces linking against the specified JPEG2000 backend.
|
||||||
patch("enable_only_openjpeg.patch", when="jp2k=openjpeg")
|
patch("enable_only_openjpeg.patch", when="jp2k=openjpeg")
|
||||||
patch("enable_only_jasper.patch", when="jp2k=jasper")
|
patch("enable_only_jasper.patch", when="jp2k=jasper")
|
||||||
|
|
||||||
# Disable NumPy even if it's available.
|
|
||||||
patch("disable_numpy.patch", when="+python~numpy")
|
|
||||||
|
|
||||||
# CMAKE_INSTALL_RPATH must be a semicolon-separated list.
|
# CMAKE_INSTALL_RPATH must be a semicolon-separated list.
|
||||||
patch("cmake_install_rpath.patch")
|
patch("cmake_install_rpath.patch")
|
||||||
|
|
||||||
|
@ -108,7 +95,6 @@ def cmake_args(self):
|
||||||
var_opt_list = [
|
var_opt_list = [
|
||||||
("+pthreads", "GRIB_THREADS"),
|
("+pthreads", "GRIB_THREADS"),
|
||||||
("+openmp", "GRIB_OMP_THREADS"),
|
("+openmp", "GRIB_OMP_THREADS"),
|
||||||
("+python", "PYTHON"),
|
|
||||||
("+fortran", "FORTRAN"),
|
("+fortran", "FORTRAN"),
|
||||||
("+examples", "EXAMPLES"),
|
("+examples", "EXAMPLES"),
|
||||||
("+test", "TESTS"),
|
("+test", "TESTS"),
|
||||||
|
@ -159,7 +145,4 @@ def cmake_args(self):
|
||||||
else:
|
else:
|
||||||
args.append("-DENABLE_AEC=OFF")
|
args.append("-DENABLE_AEC=OFF")
|
||||||
|
|
||||||
if "^python" in self.spec:
|
|
||||||
args.append("-DPYTHON_EXECUTABLE:FILEPATH=" + python.path)
|
|
||||||
|
|
||||||
return args
|
return args
|
||||||
|
|
|
@ -1,29 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Halc(MakefilePackage):
|
|
||||||
"""HALC is software that makes error correction for long reads with
|
|
||||||
high throughput."""
|
|
||||||
|
|
||||||
homepage = "https://github.com/lanl001/halc"
|
|
||||||
url = "https://github.com/lanl001/halc/archive/v1.1.tar.gz"
|
|
||||||
|
|
||||||
version("1.1", sha256="79675c3d6c40f567c2e1a5b5e7ec4fb150036582054f6ad079e06b73bd71c1ad")
|
|
||||||
|
|
||||||
depends_on("blasr", type="run")
|
|
||||||
depends_on("lordec", type="run")
|
|
||||||
depends_on("dos2unix", type="build")
|
|
||||||
depends_on("python", type="run")
|
|
||||||
|
|
||||||
parallel = False
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
install_tree("bin", prefix.bin)
|
|
||||||
install("runHALC.py", prefix.bin)
|
|
||||||
dos2unix = which("dos2unix")
|
|
||||||
dos2unix(join_path(self.prefix.bin, "runHALC.py"))
|
|
|
@ -36,7 +36,6 @@ class Herwig3(AutotoolsPackage):
|
||||||
depends_on("vbfnlo@3:")
|
depends_on("vbfnlo@3:")
|
||||||
depends_on("madgraph5amc")
|
depends_on("madgraph5amc")
|
||||||
depends_on("njet")
|
depends_on("njet")
|
||||||
depends_on("py-gosam", when="^python@2.7.0:2.7")
|
|
||||||
depends_on("gosam-contrib")
|
depends_on("gosam-contrib")
|
||||||
depends_on("openloops")
|
depends_on("openloops")
|
||||||
|
|
||||||
|
@ -60,9 +59,6 @@ def configure_args(self):
|
||||||
"--with-evtgen=" + self.spec["evtgen"].prefix,
|
"--with-evtgen=" + self.spec["evtgen"].prefix,
|
||||||
]
|
]
|
||||||
|
|
||||||
if self.spec.satisfies("^python@2.7.0:2.7"):
|
|
||||||
args.append("--with-gosam=" + self.spec["gosam"].prefix)
|
|
||||||
|
|
||||||
return args
|
return args
|
||||||
|
|
||||||
def flag_handler(self, name, flags):
|
def flag_handler(self, name, flags):
|
||||||
|
|
|
@ -1,56 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class HicPro(MakefilePackage):
|
|
||||||
"""HiC-Pro is a package designed to process Hi-C data,
|
|
||||||
from raw fastq files (paired-end Illumina data)
|
|
||||||
to the normalized contact maps"""
|
|
||||||
|
|
||||||
homepage = "https://github.com/nservant/HiC-Pro"
|
|
||||||
url = "https://github.com/nservant/HiC-Pro/archive/v2.10.0.tar.gz"
|
|
||||||
|
|
||||||
version("2.10.0", sha256="df181ea5c57247caf6b25fd15dfbb03df597ff8c4f57599d88607648bb61f1b7")
|
|
||||||
|
|
||||||
depends_on("bowtie2")
|
|
||||||
depends_on("samtools")
|
|
||||||
depends_on("python+ucs4@2.7:2.8")
|
|
||||||
depends_on("r")
|
|
||||||
depends_on("py-numpy", type=("build", "run"))
|
|
||||||
depends_on("py-scipy", type=("build", "run"))
|
|
||||||
depends_on("py-pysam", type=("build", "run"))
|
|
||||||
depends_on("py-bx-python", type=("build", "run"))
|
|
||||||
depends_on("r-rcolorbrewer", type=("build", "run"))
|
|
||||||
depends_on("r-ggplot2", type=("build", "run"))
|
|
||||||
|
|
||||||
def edit(self, spec, prefix):
|
|
||||||
config = FileFilter("config-install.txt")
|
|
||||||
config.filter("PREFIX =.*", "PREFIX = {0}".format(prefix))
|
|
||||||
config.filter("BOWTIE2 PATH =.*", "BOWTIE2_PATH = {0}".format(spec["bowtie2"].prefix))
|
|
||||||
config.filter("SAMTOOLS_PATH =.*", "SAMTOOLS_PATH = {0}".format(spec["samtools"].prefix))
|
|
||||||
config.filter("R_PATH =.*", "R_RPTH ={0}".format(spec["r"].prefix))
|
|
||||||
config.filter("PYTHON_PATH =.*", "PYTHON_RPTH ={0}".format(spec["python"].prefix))
|
|
||||||
|
|
||||||
def build(self, spec, preifx):
|
|
||||||
make("-f", "./scripts/install/Makefile", "CONFIG_SYS=./config-install.txt")
|
|
||||||
make("mapbuilder")
|
|
||||||
make("readstrimming")
|
|
||||||
make("iced")
|
|
||||||
|
|
||||||
def install(self, spec, prefix):
|
|
||||||
# Patch INSTALLPATH in config-system.txt
|
|
||||||
config = FileFilter("config-system.txt")
|
|
||||||
config.filter("/HiC-Pro_%s" % self.version, "")
|
|
||||||
# Install
|
|
||||||
install("config-hicpro.txt", prefix)
|
|
||||||
install("config-install.txt", prefix)
|
|
||||||
install("config-system.txt", prefix)
|
|
||||||
install_tree("bin", prefix.bin)
|
|
||||||
install_tree("annotation", prefix.annotation)
|
|
||||||
install_tree("doc", prefix.doc)
|
|
||||||
install_tree("scripts", prefix.scripts)
|
|
||||||
install_tree("test-op", join_path(prefix, "test-op"))
|
|
|
@ -81,11 +81,9 @@ class Hicops(CMakePackage):
|
||||||
depends_on("py-setuptools")
|
depends_on("py-setuptools")
|
||||||
depends_on("py-bottleneck")
|
depends_on("py-bottleneck")
|
||||||
depends_on("py-pyparsing")
|
depends_on("py-pyparsing")
|
||||||
depends_on("py-subprocess32")
|
|
||||||
depends_on("py-six")
|
depends_on("py-six")
|
||||||
depends_on("py-setuptools-scm")
|
depends_on("py-setuptools-scm")
|
||||||
depends_on("py-et-xmlfile")
|
depends_on("py-et-xmlfile")
|
||||||
depends_on("py-argparse")
|
|
||||||
depends_on("py-cython")
|
depends_on("py-cython")
|
||||||
depends_on("py-cycler")
|
depends_on("py-cycler")
|
||||||
depends_on("py-pytz")
|
depends_on("py-pytz")
|
||||||
|
|
|
@ -35,4 +35,3 @@ class Httpie(PythonPackage):
|
||||||
depends_on("py-requests@2.11:", type=("build", "run"))
|
depends_on("py-requests@2.11:", type=("build", "run"))
|
||||||
depends_on("py-requests@2.22:+socks", when="@2.5:", type=("build", "run"))
|
depends_on("py-requests@2.22:+socks", when="@2.5:", type=("build", "run"))
|
||||||
depends_on("py-requests-toolbelt@0.9.1:", when="@2.5:", type=("build", "run"))
|
depends_on("py-requests-toolbelt@0.9.1:", when="@2.5:", type=("build", "run"))
|
||||||
depends_on("py-argparse@1.2.1:", type=("build", "run"), when="^python@:2.6,3.0:3.1")
|
|
||||||
|
|
|
@ -21,7 +21,6 @@ class Isescan(Package):
|
||||||
depends_on("py-scipy@0.13.1:", type="run")
|
depends_on("py-scipy@0.13.1:", type="run")
|
||||||
depends_on("py-biopython@1.62:", type="run")
|
depends_on("py-biopython@1.62:", type="run")
|
||||||
depends_on("py-fastcluster", type="run")
|
depends_on("py-fastcluster", type="run")
|
||||||
depends_on("py-argparse", when="^python@:2.6,3.0:3.1", type="run")
|
|
||||||
depends_on("blast-plus@2.2.31:", type="run")
|
depends_on("blast-plus@2.2.31:", type="run")
|
||||||
depends_on("fraggenescan@:1.30", type="run")
|
depends_on("fraggenescan@:1.30", type="run")
|
||||||
depends_on("hmmer@3.1b2:", type="run")
|
depends_on("hmmer@3.1b2:", type="run")
|
||||||
|
|
|
@ -17,10 +17,5 @@ class Itstool(AutotoolsPackage):
|
||||||
maintainers = ["agoodLANL"]
|
maintainers = ["agoodLANL"]
|
||||||
|
|
||||||
version("2.0.7", sha256="6b9a7cd29a12bb95598f5750e8763cee78836a1a207f85b74d8b3275b27e87ca")
|
version("2.0.7", sha256="6b9a7cd29a12bb95598f5750e8763cee78836a1a207f85b74d8b3275b27e87ca")
|
||||||
version("2.0.2", sha256="bf909fb59b11a646681a8534d5700fec99be83bb2c57badf8c1844512227033a")
|
|
||||||
version("2.0.1", sha256="ec6b1b32403cbe338b6ac63c61ab1ecd361f539a6e41ef50eae56a4f577234d1")
|
|
||||||
version("2.0.0", sha256="14708111b11b4a70e240e3b404d7a58941e61dbb5caf7e18833294d654c09169")
|
|
||||||
version("1.2.0", sha256="46fed63fb89c72dbfc03097b4477084ff05ad6f171212d8f1f1546ea543978aa")
|
|
||||||
|
|
||||||
depends_on("libxml2+python", type=("build", "run"))
|
depends_on("libxml2+python", type=("build", "run"))
|
||||||
depends_on("python@2.0:2", when="@:2.0.2")
|
|
||||||
|
|
|
@ -243,7 +243,6 @@ class Lbann(CMakePackage, CudaPackage, ROCmPackage):
|
||||||
depends_on("python@3: +shared", type=("build", "run"), when="@:0.90,0.99: +pfe")
|
depends_on("python@3: +shared", type=("build", "run"), when="@:0.90,0.99: +pfe")
|
||||||
extends("python", when="+pfe")
|
extends("python", when="+pfe")
|
||||||
depends_on("py-setuptools", type="build", when="+pfe")
|
depends_on("py-setuptools", type="build", when="+pfe")
|
||||||
depends_on("py-argparse", type="run", when="@:0.90,0.99: +pfe ^python@:2.6,3.0:3.1")
|
|
||||||
depends_on("py-protobuf+cpp@3.10.0:", type=("build", "run"), when="@:0.90,0.99: +pfe")
|
depends_on("py-protobuf+cpp@3.10.0:", type=("build", "run"), when="@:0.90,0.99: +pfe")
|
||||||
|
|
||||||
depends_on("protobuf+shared@3.10.0:", when="@:0.90,0.99:")
|
depends_on("protobuf+shared@3.10.0:", when="@:0.90,0.99:")
|
||||||
|
|
|
@ -27,17 +27,8 @@ class Lhapdf5(AutotoolsPackage):
|
||||||
version("5.8.0", sha256="8381ea5f785dde95772a2b6d5890f1cb72012e223e6861823fd81b09eedaa7a3")
|
version("5.8.0", sha256="8381ea5f785dde95772a2b6d5890f1cb72012e223e6861823fd81b09eedaa7a3")
|
||||||
version("5.7.1", sha256="40529629351598317fbf7b5905661e51b23778019d50451eee78d7b1118e2559")
|
version("5.7.1", sha256="40529629351598317fbf7b5905661e51b23778019d50451eee78d7b1118e2559")
|
||||||
|
|
||||||
variant("python2", default=False, description="Enable Python2 extension")
|
|
||||||
|
|
||||||
depends_on("python@2.3:2.7", when="+python2")
|
|
||||||
|
|
||||||
def setup_build_environment(self, env):
|
def setup_build_environment(self, env):
|
||||||
env.append_flags("FFLAGS", "-std=legacy")
|
env.append_flags("FFLAGS", "-std=legacy")
|
||||||
if self.spec.satisfies("+python2"):
|
|
||||||
env.append_flags("PYTHON", join_path(self.spec["python"].prefix.bin, "python"))
|
|
||||||
|
|
||||||
def configure_args(self):
|
def configure_args(self):
|
||||||
args = []
|
return ["--disable-pyext"]
|
||||||
if self.spec.satisfies("-python2"):
|
|
||||||
args.append("--disable-pyext")
|
|
||||||
return args
|
|
||||||
|
|
|
@ -20,12 +20,11 @@ class Libproxy(CMakePackage):
|
||||||
version("0.4.13", sha256="d610bc0ef81a18ba418d759c5f4f87bf7102229a9153fb397d7d490987330ffd")
|
version("0.4.13", sha256="d610bc0ef81a18ba418d759c5f4f87bf7102229a9153fb397d7d490987330ffd")
|
||||||
|
|
||||||
variant("perl", default=False, description="Enable Perl bindings")
|
variant("perl", default=False, description="Enable Perl bindings")
|
||||||
variant("python", default=True, description="Enable Python bindings")
|
variant("python", default=True, description="Enable Python bindings", when="@0.4.16:")
|
||||||
|
|
||||||
depends_on("zlib")
|
depends_on("zlib")
|
||||||
depends_on("perl", type=("build", "run"), when="+perl")
|
depends_on("perl", type=("build", "run"), when="+perl")
|
||||||
depends_on("python", type=("build", "run"), when="+python")
|
depends_on("python", type=("build", "run"), when="+python")
|
||||||
depends_on("python@:3.6", type=("build", "run"), when="@:0.4.15 +python")
|
|
||||||
|
|
||||||
def cmake_args(self):
|
def cmake_args(self):
|
||||||
return [
|
return [
|
||||||
|
|
|
@ -1,112 +0,0 @@
|
||||||
--- a/lldb/include/lldb/Utility/TaskPool.h
|
|
||||||
+++ b/lldb/include/lldb/Utility/TaskPool.h
|
|
||||||
@@ -33,6 +33,7 @@
|
|
||||||
#include <queue>
|
|
||||||
#include <thread>
|
|
||||||
#include <vector>
|
|
||||||
+#include <functional>
|
|
||||||
|
|
||||||
// Global TaskPool class for running tasks in parallel on a set of worker thread
|
|
||||||
// created the first
|
|
||||||
# Fix lld templates: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=230463
|
|
||||||
--- a/lld/ELF/LTO.cpp
|
|
||||||
+++ b/lld/ELF/LTO.cpp
|
|
||||||
@@ -158,7 +158,7 @@
|
|
||||||
return Ret;
|
|
||||||
}
|
|
||||||
|
|
||||||
-template void BitcodeCompiler::template add<ELF32LE>(BitcodeFile &);
|
|
||||||
-template void BitcodeCompiler::template add<ELF32BE>(BitcodeFile &);
|
|
||||||
-template void BitcodeCompiler::template add<ELF64LE>(BitcodeFile &);
|
|
||||||
-template void BitcodeCompiler::template add<ELF64BE>(BitcodeFile &);
|
|
||||||
+template void BitcodeCompiler::add<ELF32LE>(BitcodeFile &);
|
|
||||||
+template void BitcodeCompiler::add<ELF32BE>(BitcodeFile &);
|
|
||||||
+template void BitcodeCompiler::add<ELF64LE>(BitcodeFile &);
|
|
||||||
+template void BitcodeCompiler::add<ELF64BE>(BitcodeFile &);
|
|
||||||
--- a/lld/ELF/Symbols.cpp
|
|
||||||
+++ b/lld/ELF/Symbols.cpp
|
|
||||||
@@ -343,45 +343,45 @@
|
|
||||||
template bool SymbolBody::hasThunk<ELF64LE>() const;
|
|
||||||
template bool SymbolBody::hasThunk<ELF64BE>() const;
|
|
||||||
|
|
||||||
-template uint32_t SymbolBody::template getVA<ELF32LE>(uint32_t) const;
|
|
||||||
-template uint32_t SymbolBody::template getVA<ELF32BE>(uint32_t) const;
|
|
||||||
-template uint64_t SymbolBody::template getVA<ELF64LE>(uint64_t) const;
|
|
||||||
-template uint64_t SymbolBody::template getVA<ELF64BE>(uint64_t) const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getGotVA<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getGotVA<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotVA<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotVA<ELF64BE>() const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getGotOffset<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getGotOffset<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotOffset<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotOffset<ELF64BE>() const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getGotPltVA<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getGotPltVA<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotPltVA<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotPltVA<ELF64BE>() const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getThunkVA<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getThunkVA<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getThunkVA<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getThunkVA<ELF64BE>() const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getGotPltOffset<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getGotPltOffset<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotPltOffset<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getGotPltOffset<ELF64BE>() const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getPltVA<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getPltVA<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getPltVA<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getPltVA<ELF64BE>() const;
|
|
||||||
-
|
|
||||||
-template uint32_t SymbolBody::template getSize<ELF32LE>() const;
|
|
||||||
-template uint32_t SymbolBody::template getSize<ELF32BE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getSize<ELF64LE>() const;
|
|
||||||
-template uint64_t SymbolBody::template getSize<ELF64BE>() const;
|
|
||||||
+template uint32_t SymbolBody::getVA<ELF32LE>(uint32_t) const;
|
|
||||||
+template uint32_t SymbolBody::getVA<ELF32BE>(uint32_t) const;
|
|
||||||
+template uint64_t SymbolBody::getVA<ELF64LE>(uint64_t) const;
|
|
||||||
+template uint64_t SymbolBody::getVA<ELF64BE>(uint64_t) const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getGotVA<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getGotVA<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotVA<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotVA<ELF64BE>() const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getGotOffset<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getGotOffset<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotOffset<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotOffset<ELF64BE>() const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getGotPltVA<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getGotPltVA<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotPltVA<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotPltVA<ELF64BE>() const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getThunkVA<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getThunkVA<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getThunkVA<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getThunkVA<ELF64BE>() const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getGotPltOffset<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getGotPltOffset<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotPltOffset<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getGotPltOffset<ELF64BE>() const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getPltVA<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getPltVA<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getPltVA<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getPltVA<ELF64BE>() const;
|
|
||||||
+
|
|
||||||
+template uint32_t SymbolBody::getSize<ELF32LE>() const;
|
|
||||||
+template uint32_t SymbolBody::getSize<ELF32BE>() const;
|
|
||||||
+template uint64_t SymbolBody::getSize<ELF64LE>() const;
|
|
||||||
+template uint64_t SymbolBody::getSize<ELF64BE>() const;
|
|
||||||
|
|
||||||
template class elf::Undefined<ELF32LE>;
|
|
||||||
template class elf::Undefined<ELF32BE>;
|
|
|
@ -1,10 +0,0 @@
|
||||||
--- a/lldb/include/lldb/Utility/TaskPool.h 2016-09-06 16:57:50.000000000 -0400
|
|
||||||
+++ b/lldb/include/lldb/Utility/TaskPool.h 2017-08-29 16:29:41.448584015 -0400
|
|
||||||
@@ -28,6 +28,7 @@
|
|
||||||
|
|
||||||
#include <cassert>
|
|
||||||
#include <cstdint>
|
|
||||||
+#include <functional>
|
|
||||||
#include <future>
|
|
||||||
#include <list>
|
|
||||||
#include <queue>
|
|
|
@ -34,7 +34,6 @@ class Llvm(CMakePackage, CudaPackage):
|
||||||
|
|
||||||
family = "compiler" # Used by lmod
|
family = "compiler" # Used by lmod
|
||||||
|
|
||||||
# fmt: off
|
|
||||||
version("main", branch="main")
|
version("main", branch="main")
|
||||||
version("15.0.4", sha256="e24b4d3bf7821dcb1c901d1e09096c1f88fb00095c5a6ef893baab4836975e52")
|
version("15.0.4", sha256="e24b4d3bf7821dcb1c901d1e09096c1f88fb00095c5a6ef893baab4836975e52")
|
||||||
version("15.0.3", sha256="8ac8e4c0982bf236526d737d385db5e1e66543ab217a9355d54159659eae3774")
|
version("15.0.3", sha256="8ac8e4c0982bf236526d737d385db5e1e66543ab217a9355d54159659eae3774")
|
||||||
|
@ -68,17 +67,6 @@ class Llvm(CMakePackage, CudaPackage):
|
||||||
version("5.0.2", sha256="fe87aa11558c08856739bfd9bd971263a28657663cb0c3a0af01b94f03b0b795")
|
version("5.0.2", sha256="fe87aa11558c08856739bfd9bd971263a28657663cb0c3a0af01b94f03b0b795")
|
||||||
version("5.0.1", sha256="84ca454abf262579814a2a2b846569f6e0cb3e16dc33ca3642b4f1dff6fbafd3")
|
version("5.0.1", sha256="84ca454abf262579814a2a2b846569f6e0cb3e16dc33ca3642b4f1dff6fbafd3")
|
||||||
version("5.0.0", sha256="1f1843315657a4371d8ca37f01265fa9aae17dbcf46d2d0a95c1fdb3c6a4bab6")
|
version("5.0.0", sha256="1f1843315657a4371d8ca37f01265fa9aae17dbcf46d2d0a95c1fdb3c6a4bab6")
|
||||||
version("4.0.1", sha256="cd664fb3eec3208c08fb61189c00c9118c290b3be5adb3215a97b24255618be5")
|
|
||||||
version("4.0.0", sha256="28ca4b2fc434cb1f558e8865386c233c2a6134437249b8b3765ae745ffa56a34")
|
|
||||||
version("3.9.1", sha256="f5b6922a5c65f9232f83d89831191f2c3ccf4f41fdd8c63e6645bbf578c4ab92")
|
|
||||||
version("3.9.0", sha256="9c6563a72c8b5b79941c773937d997dd2b1b5b3f640136d02719ec19f35e0333")
|
|
||||||
version("3.8.1", sha256="69360f0648fde0dc3d3c4b339624613f3bc2a89c4858933bc3871a250ad02826")
|
|
||||||
version("3.8.0", sha256="b5cc5974cc2fd4e9e49e1bbd0700f872501a8678bd9694fa2b36c65c026df1d1")
|
|
||||||
version("3.7.1", sha256="d2cb0eb9b8eb21e07605bfe5e7a5c6c5f5f8c2efdac01ec1da6ffacaabe4195a")
|
|
||||||
version("3.7.0", sha256="dc00bc230be2006fb87b84f6fe4800ca28bc98e6692811a98195da53c9cb28c6")
|
|
||||||
version("3.6.2", sha256="f75d703a388ba01d607f9cf96180863a5e4a106827ade17b221d43e6db20778a")
|
|
||||||
version("3.5.1", sha256="5d739684170d5b2b304e4fb521532d5c8281492f71e1a8568187bfa38eb5909d")
|
|
||||||
# fmt: on
|
|
||||||
|
|
||||||
# NOTE: The debug version of LLVM is an order of magnitude larger than
|
# NOTE: The debug version of LLVM is an order of magnitude larger than
|
||||||
# the release version, and may take up 20-30 GB of space. If you want
|
# the release version, and may take up 20-30 GB of space. If you want
|
||||||
|
@ -234,13 +222,11 @@ class Llvm(CMakePackage, CudaPackage):
|
||||||
depends_on("cmake@3.4.3:", type="build")
|
depends_on("cmake@3.4.3:", type="build")
|
||||||
depends_on("cmake@3.13.4:", type="build", when="@12:")
|
depends_on("cmake@3.13.4:", type="build", when="@12:")
|
||||||
depends_on("ninja", type="build")
|
depends_on("ninja", type="build")
|
||||||
depends_on("python@2.7:2.8", when="@:4 ~python", type="build")
|
depends_on("python", when="~python", type="build")
|
||||||
depends_on("python", when="@5: ~python", type="build")
|
|
||||||
depends_on("pkgconfig", type="build")
|
depends_on("pkgconfig", type="build")
|
||||||
|
|
||||||
# Universal dependency
|
# Universal dependency
|
||||||
depends_on("python@2.7:2.8", when="@:4+python")
|
depends_on("python", when="+python")
|
||||||
depends_on("python", when="@5:+python")
|
|
||||||
|
|
||||||
# clang and clang-tools dependencies
|
# clang and clang-tools dependencies
|
||||||
depends_on("z3@4.7.1:", when="+z3")
|
depends_on("z3@4.7.1:", when="+z3")
|
||||||
|
@ -261,20 +247,14 @@ class Llvm(CMakePackage, CudaPackage):
|
||||||
depends_on("swig@3:", when="@12:")
|
depends_on("swig@3:", when="@12:")
|
||||||
depends_on("libedit", when="+lldb")
|
depends_on("libedit", when="+lldb")
|
||||||
depends_on("ncurses", when="+lldb")
|
depends_on("ncurses", when="+lldb")
|
||||||
depends_on("py-six", when="@5.0.0: +lldb +python")
|
depends_on("py-six", when="+lldb+python")
|
||||||
|
|
||||||
# gold support, required for some features
|
# gold support, required for some features
|
||||||
depends_on("binutils+gold+ld+plugins", when="+gold")
|
depends_on("binutils+gold+ld+plugins", when="+gold")
|
||||||
|
|
||||||
# polly plugin
|
|
||||||
depends_on("gmp", when="@:3.6 +polly")
|
|
||||||
depends_on("isl", when="@:3.6 +polly")
|
|
||||||
|
|
||||||
# Older LLVM do not build with newer compilers, and vice versa
|
# Older LLVM do not build with newer compilers, and vice versa
|
||||||
conflicts("%gcc@8:", when="@:5")
|
conflicts("%gcc@8:", when="@:5")
|
||||||
conflicts("%gcc@:5.0", when="@8:")
|
conflicts("%gcc@:5.0", when="@8:")
|
||||||
# clang/lib: a lambda parameter cannot shadow an explicitly captured entity
|
|
||||||
conflicts("%clang@8:", when="@:4")
|
|
||||||
# Internal compiler error on gcc 8.4 on aarch64 https://bugzilla.redhat.com/show_bug.cgi?id=1958295
|
# Internal compiler error on gcc 8.4 on aarch64 https://bugzilla.redhat.com/show_bug.cgi?id=1958295
|
||||||
conflicts("%gcc@8.4:8.4.9", when="@12: target=aarch64:")
|
conflicts("%gcc@8.4:8.4.9", when="@12: target=aarch64:")
|
||||||
|
|
||||||
|
@ -290,14 +270,6 @@ class Llvm(CMakePackage, CudaPackage):
|
||||||
conflicts("%clang@:10", when="@13:+libcxx")
|
conflicts("%clang@:10", when="@13:+libcxx")
|
||||||
conflicts("%apple-clang@:11", when="@13:+libcxx")
|
conflicts("%apple-clang@:11", when="@13:+libcxx")
|
||||||
|
|
||||||
# libcxx-4 and compiler-rt-4 fail to build with "newer" clang and gcc versions:
|
|
||||||
conflicts("%gcc@7:", when="@:4+libcxx")
|
|
||||||
conflicts("%clang@6:", when="@:4+libcxx")
|
|
||||||
conflicts("%apple-clang@6:", when="@:4+libcxx")
|
|
||||||
conflicts("%gcc@7:", when="@:4+compiler-rt")
|
|
||||||
conflicts("%clang@6:", when="@:4+compiler-rt")
|
|
||||||
conflicts("%apple-clang@6:", when="@:4+compiler-rt")
|
|
||||||
|
|
||||||
# cuda_arch value must be specified
|
# cuda_arch value must be specified
|
||||||
conflicts("cuda_arch=none", when="+cuda", msg="A value for cuda_arch must be specified.")
|
conflicts("cuda_arch=none", when="+cuda", msg="A value for cuda_arch must be specified.")
|
||||||
|
|
||||||
|
@ -306,14 +278,10 @@ class Llvm(CMakePackage, CudaPackage):
|
||||||
# Fixed in upstream versions of both
|
# Fixed in upstream versions of both
|
||||||
conflicts("^cmake@3.19.0", when="@6:11.0.0")
|
conflicts("^cmake@3.19.0", when="@6:11.0.0")
|
||||||
|
|
||||||
# Github issue #4986
|
|
||||||
patch("llvm_gcc7.patch", when="@4.0.0:4.0.1+lldb %gcc@7.0:")
|
|
||||||
|
|
||||||
# sys/ustat.h has been removed in favour of statfs from glibc-2.28. Use fixed sizes:
|
# sys/ustat.h has been removed in favour of statfs from glibc-2.28. Use fixed sizes:
|
||||||
patch("llvm5-sanitizer-ustat.patch", when="@4:6.0.0+compiler-rt")
|
patch("llvm5-sanitizer-ustat.patch", when="@4:6.0.0+compiler-rt")
|
||||||
|
|
||||||
# Fix lld templates: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=230463
|
# Fix lld templates: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=230463
|
||||||
patch("llvm4-lld-ELF-Symbols.patch", when="@4+lld%clang@6:")
|
|
||||||
patch("llvm5-lld-ELF-Symbols.patch", when="@5+lld%clang@7:")
|
patch("llvm5-lld-ELF-Symbols.patch", when="@5+lld%clang@7:")
|
||||||
|
|
||||||
# Fix missing std:size_t in 'llvm@4:5' when built with '%clang@7:'
|
# Fix missing std:size_t in 'llvm@4:5' when built with '%clang@7:'
|
||||||
|
|
|
@ -32,11 +32,6 @@ class Madgraph5amc(MakefilePackage):
|
||||||
url="https://launchpad.net/mg5amcnlo/2.0/2.8.x/+download/MG5_aMC_v2.8.0.tar.gz",
|
url="https://launchpad.net/mg5amcnlo/2.0/2.8.x/+download/MG5_aMC_v2.8.0.tar.gz",
|
||||||
)
|
)
|
||||||
version("2.7.3.py3", sha256="400c26f9b15b07baaad9bd62091ceea785c2d3a59618fdc27cad213816bc7225")
|
version("2.7.3.py3", sha256="400c26f9b15b07baaad9bd62091ceea785c2d3a59618fdc27cad213816bc7225")
|
||||||
version(
|
|
||||||
"2.7.3.py2",
|
|
||||||
sha256="0b665356f4d9359e6e382e0f408dc11db594734567c6b2f0ec0e0697f2dbe099",
|
|
||||||
url="https://launchpad.net/mg5amcnlo/2.0/2.7.x/+download/MG5_aMC_v2.7.3.tar.gz",
|
|
||||||
)
|
|
||||||
|
|
||||||
variant(
|
variant(
|
||||||
"atlas",
|
"atlas",
|
||||||
|
@ -55,7 +50,6 @@ class Madgraph5amc(MakefilePackage):
|
||||||
depends_on("fastjet")
|
depends_on("fastjet")
|
||||||
depends_on("py-six", when="@2.7.3.py3,2.8.0:", type=("build", "run"))
|
depends_on("py-six", when="@2.7.3.py3,2.8.0:", type=("build", "run"))
|
||||||
|
|
||||||
depends_on("python@2.7.0:2.8.0", when="@2.7.3.py2", type=("build", "run"))
|
|
||||||
depends_on("python@3.7:", when="@2.7.3.py3", type=("build", "run"))
|
depends_on("python@3.7:", when="@2.7.3.py3", type=("build", "run"))
|
||||||
depends_on("python@2.7.0:2.8.0,3.7:", when="@2.8.0:", type=("build", "run"))
|
depends_on("python@2.7.0:2.8.0,3.7:", when="@2.8.0:", type=("build", "run"))
|
||||||
depends_on("libtirpc")
|
depends_on("libtirpc")
|
||||||
|
|
|
@ -28,22 +28,9 @@ class Magics(CMakePackage):
|
||||||
version("4.2.6", sha256="9b34a375d9125ab6e8a715b970da2e479f96370bac6a5bb8a015a079ed9e027c")
|
version("4.2.6", sha256="9b34a375d9125ab6e8a715b970da2e479f96370bac6a5bb8a015a079ed9e027c")
|
||||||
version("4.2.4", sha256="920c7dbb1aaabe65a31c6c18010829210f8b2f8d614b6c405dc5a4530e346f07")
|
version("4.2.4", sha256="920c7dbb1aaabe65a31c6c18010829210f8b2f8d614b6c405dc5a4530e346f07")
|
||||||
version("4.1.0", sha256="da626c31f53716990754dd72ab7b2f3902a8ad924b23ef3309bd14900d170541")
|
version("4.1.0", sha256="da626c31f53716990754dd72ab7b2f3902a8ad924b23ef3309bd14900d170541")
|
||||||
version("2.34.3", sha256="38487562e83c0470f94d9c7fb9418cbadf92f1e643033237baba2abdc77e6238")
|
|
||||||
version("2.34.1", sha256="8df27f8f262ebc32a61f8696df15a7b4a6e4203b2a8e53fe7aa13caa1c4e3fa4")
|
|
||||||
version("2.33.0", sha256="32d3079749f89988715a8c3df01b712d9b989b7fd242828ec09563e47c5a3e82")
|
|
||||||
version("2.32.0", sha256="233b046c93b84be60ac8011212668de35c2693d89fffcaad333b42b8c4ffad06")
|
|
||||||
version("2.31.0", sha256="13c314661bb154499a87db9063238d6ecebad0d4fec37b0f3d90fe34aa37eec6")
|
|
||||||
version("2.29.6", sha256="88cfa5e2bd823c4669a3d2fe0349f14545e810333c1b4d031ce74a7a5218a2db")
|
|
||||||
version("2.29.4", sha256="82bdb4f7e38776776d2155a82d0acaa017402365a043731708345ac4ac00198f")
|
|
||||||
version("2.29.0", sha256="4c5067c4630e831bf81d15454476ff0d050c488b768f6a10272aad62ce8d0f92")
|
|
||||||
|
|
||||||
conflicts("%gcc@11:", when="@:4.4", msg="missing #include <limits>")
|
conflicts("%gcc@11:", when="@:4.4", msg="missing #include <limits>")
|
||||||
|
|
||||||
# The patch reorders includes and adds namespaces where necessary to
|
|
||||||
# resolve ambiguity of invocations of isnan and isinf functions. The
|
|
||||||
# patch is not needed since the version 2.29.1
|
|
||||||
patch("resolve_isnan_ambiguity.patch", when="@2.29.0")
|
|
||||||
|
|
||||||
variant(
|
variant(
|
||||||
"grib",
|
"grib",
|
||||||
default="eccodes",
|
default="eccodes",
|
||||||
|
@ -52,7 +39,6 @@ class Magics(CMakePackage):
|
||||||
)
|
)
|
||||||
variant("netcdf", default=False, description="Enable NetCDF support")
|
variant("netcdf", default=False, description="Enable NetCDF support")
|
||||||
variant("cairo", default=False, description="Enable cairo support[png/jpeg]")
|
variant("cairo", default=False, description="Enable cairo support[png/jpeg]")
|
||||||
variant("python", default=False, description="Enable Python interface")
|
|
||||||
variant("fortran", default=False, description="Enable Fortran interface")
|
variant("fortran", default=False, description="Enable Fortran interface")
|
||||||
variant("metview", default=False, description="Enable metview support")
|
variant("metview", default=False, description="Enable metview support")
|
||||||
variant("qt", default=False, description="Enable metview support with qt")
|
variant("qt", default=False, description="Enable metview support with qt")
|
||||||
|
@ -69,7 +55,6 @@ class Magics(CMakePackage):
|
||||||
depends_on("cmake@2.8.11:", type="build")
|
depends_on("cmake@2.8.11:", type="build")
|
||||||
depends_on("pkgconfig", type="build")
|
depends_on("pkgconfig", type="build")
|
||||||
depends_on("python", type="build")
|
depends_on("python", type="build")
|
||||||
depends_on("python@:2", type="build", when="@:3")
|
|
||||||
depends_on("perl", type="build")
|
depends_on("perl", type="build")
|
||||||
depends_on("perl-xml-parser", type="build")
|
depends_on("perl-xml-parser", type="build")
|
||||||
|
|
||||||
|
@ -108,27 +93,8 @@ class Magics(CMakePackage):
|
||||||
depends_on("libemos grib=grib-api", when="+bufr grib=grib-api")
|
depends_on("libemos grib=grib-api", when="+bufr grib=grib-api")
|
||||||
depends_on("qt", when="+metview+qt")
|
depends_on("qt", when="+metview+qt")
|
||||||
|
|
||||||
extends("python", when="+python")
|
depends_on("python", type=("build"))
|
||||||
# Python 2 is required for running the building scripts. Since we can't
|
depends_on("py-jinja2", type=("build"))
|
||||||
# have two different versions of Python at the same time, we haven't even
|
|
||||||
# tested if the Python interface supports Python 3.
|
|
||||||
depends_on("python", when="+python", type=("link", "run"))
|
|
||||||
depends_on("py-numpy", when="+python", type=("build", "run"))
|
|
||||||
depends_on("swig", when="+python", type="build")
|
|
||||||
# Versions @4: supports python 2.7 and 3.x, and require python
|
|
||||||
# and py-jinja2 for build (even though does not build python interface)
|
|
||||||
depends_on("python", when="@4.0.0:", type=("build"))
|
|
||||||
depends_on("py-jinja2", when="@4.0.0:", type=("build"))
|
|
||||||
|
|
||||||
conflicts("grib=eccodes", when="@:2.29.0", msg="Eccodes is supported starting version 2.29.1")
|
|
||||||
conflicts(
|
|
||||||
"+python", when="@:2.28", msg="Python interface is supported starting version 2.29.0"
|
|
||||||
)
|
|
||||||
conflicts(
|
|
||||||
"+python",
|
|
||||||
when="@4:",
|
|
||||||
msg="Python interface is separate from the library " "starting with 4.0.0",
|
|
||||||
)
|
|
||||||
|
|
||||||
# Replace system python and perl by spack versions:
|
# Replace system python and perl by spack versions:
|
||||||
def patch(self):
|
def patch(self):
|
||||||
|
@ -162,12 +128,6 @@ def cmake_args(self):
|
||||||
else:
|
else:
|
||||||
args.append("-DENABLE_CAIRO=OFF")
|
args.append("-DENABLE_CAIRO=OFF")
|
||||||
|
|
||||||
if "+python" in self.spec:
|
|
||||||
args.append("-DENABLE_PYTHON=ON")
|
|
||||||
else:
|
|
||||||
if self.spec.satisfies("@2.29.0:"):
|
|
||||||
args.append("-DENABLE_PYTHON=OFF")
|
|
||||||
|
|
||||||
if "+fortran" in self.spec:
|
if "+fortran" in self.spec:
|
||||||
args.append("-DENABLE_FORTRAN=ON")
|
args.append("-DENABLE_FORTRAN=ON")
|
||||||
else:
|
else:
|
||||||
|
|
|
@ -1,73 +0,0 @@
|
||||||
--- a/src/common/Polyline.cc 2016-04-28 14:38:09.000000000 +0200
|
|
||||||
+++ b/src/common/Polyline.cc 2016-09-14 13:31:35.784617803 +0200
|
|
||||||
@@ -31,2 +30,0 @@
|
|
||||||
-#include "TeCoord2D.h"
|
|
||||||
-#include "TeGeometryAlgorithms.h"
|
|
||||||
--- a/src/decoders/GribRegularInterpretor.cc 2016-04-28 14:38:09.000000000 +0200
|
|
||||||
+++ b/src/decoders/GribRegularInterpretor.cc 2016-09-14 13:43:41.673614590 +0200
|
|
||||||
@@ -2083,2 +2083,2 @@
|
|
||||||
- if (isnan(val1)) {
|
|
||||||
- if (isnan(val2)) {
|
|
||||||
+ if (std::isnan(val1)) {
|
|
||||||
+ if (std::isnan(val2)) {
|
|
||||||
@@ -2090 +2090 @@
|
|
||||||
- if (isnan(val2)) {
|
|
||||||
+ if (std::isnan(val2)) {
|
|
||||||
@@ -2101 +2101 @@
|
|
||||||
- if (isnan(val) || isinf(val) || isinf(-val)) {
|
|
||||||
+ if (std::isnan(val) || std::isinf(val) || std::isinf(-val)) {
|
|
||||||
@@ -2105 +2105 @@
|
|
||||||
- if (isnan(val))
|
|
||||||
+ if (std::isnan(val))
|
|
||||||
--- a/src/decoders/GribSatelliteInterpretor.cc 2016-04-28 14:38:09.000000000 +0200
|
|
||||||
+++ b/src/decoders/GribSatelliteInterpretor.cc 2016-09-14 13:48:55.243699910 +0200
|
|
||||||
@@ -33,5 +32,0 @@
|
|
||||||
-#include "TeProjection.h"
|
|
||||||
-#include "TeDataTypes.h"
|
|
||||||
-#include "TeRasterParams.h"
|
|
||||||
-#include "TeDecoderMemory.h"
|
|
||||||
-#include "TeRasterRemap.h"
|
|
||||||
--- a/src/decoders/NetcdfGeoMatrixInterpretor.cc 2016-04-28 14:38:09.000000000 +0200
|
|
||||||
+++ b/src/decoders/NetcdfGeoMatrixInterpretor.cc 2016-09-14 13:52:37.481201085 +0200
|
|
||||||
@@ -93 +93 @@
|
|
||||||
- if ( !isnan(*d) ) {
|
|
||||||
+ if ( !std::isnan(*d) ) {
|
|
||||||
--- a/src/decoders/NetcdfOrcaInterpretor.cc 2016-04-28 14:38:09.000000000 +0200
|
|
||||||
+++ b/src/decoders/NetcdfOrcaInterpretor.cc 2016-09-14 13:51:16.248650570 +0200
|
|
||||||
@@ -210,2 +210,2 @@
|
|
||||||
- if ( isnan(val1) ) {
|
|
||||||
- if ( isnan(val2) ) {
|
|
||||||
+ if ( std::isnan(val1) ) {
|
|
||||||
+ if ( std::isnan(val2) ) {
|
|
||||||
@@ -218 +218 @@
|
|
||||||
- if ( isnan(val2) ) {
|
|
||||||
+ if ( std::isnan(val2) ) {
|
|
||||||
@@ -226 +226 @@
|
|
||||||
- if (isnan(val) || isinf(val) || isinf(-val) ) {
|
|
||||||
+ if (std::isnan(val) || std::isinf(val) || std::isinf(-val) ) {
|
|
||||||
@@ -230 +230 @@
|
|
||||||
- if (isnan(val) ) val = missing;
|
|
||||||
+ if (std::isnan(val) ) val = missing;
|
|
||||||
@@ -296 +296 @@
|
|
||||||
- if (isnan(value) )
|
|
||||||
+ if (std::isnan(value) )
|
|
||||||
--- a/src/terralib/kernel/TeCentroid.cpp 2016-04-28 14:38:09.000000000 +0200
|
|
||||||
+++ b/src/terralib/kernel/TeCentroid.cpp 2016-09-14 14:17:31.675996554 +0200
|
|
||||||
@@ -23,0 +24,2 @@
|
|
||||||
+#include "TeGeometryAlgorithms.h"
|
|
||||||
+
|
|
||||||
@@ -30 +31,0 @@
|
|
||||||
-#include "TeGeometryAlgorithms.h"
|
|
||||||
--- a/src/terralib/kernel/TeDatabase.h 2014-11-07 17:39:24.000000000 +0100
|
|
||||||
+++ b/src/terralib/kernel/TeDatabase.h 2016-09-14 14:20:01.041100590 +0200
|
|
||||||
@@ -33,0 +34 @@
|
|
||||||
+#include "TeGeometry.h"
|
|
||||||
@@ -38 +38,0 @@
|
|
||||||
-#include "TeGeometry.h"
|
|
||||||
--- a/src/terralib/kernel/TeOverlayUtils.h 2014-11-07 17:39:24.000000000 +0100
|
|
||||||
+++ b/src/terralib/kernel/TeOverlayUtils.h 2016-09-14 14:21:51.649920405 +0200
|
|
||||||
@@ -37,0 +38,2 @@
|
|
||||||
+#include "TeGeometry.h"
|
|
||||||
+
|
|
||||||
@@ -44 +45,0 @@
|
|
||||||
-#include "TeGeometry.h"
|
|
|
@ -1,11 +0,0 @@
|
||||||
--- spack-src/src/cmake/boost.cmake.bak 2019-06-29 07:04:47.000000000 +0900
|
|
||||||
+++ spack-src/src/cmake/boost.cmake 2021-03-30 11:36:39.000000000 +0900
|
|
||||||
@@ -168,6 +168,8 @@
|
|
||||||
message (FATAL_ERROR "Failed to unpack boost library ${THIS_BOOST_VERSION}")
|
|
||||||
endif ()
|
|
||||||
execute_process(
|
|
||||||
+ COMMAND "sed" -i "s/-m64//g" ${BOOST_BUILD_DIR}/boost_1_58_0/tools/build/src/tools/gcc.jam)
|
|
||||||
+ execute_process(
|
|
||||||
COMMAND ${CMAKE_COMMAND} -E touch "${BOOST_BUILD_DIR}/boost_unpack_complete")
|
|
||||||
endif ()
|
|
||||||
|
|
|
@ -1,26 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Manta(CMakePackage):
|
|
||||||
"""Structural variant and indel caller for mapped sequencing data"""
|
|
||||||
|
|
||||||
homepage = "https://github.com/Illumina/manta"
|
|
||||||
url = "https://github.com/Illumina/manta/releases/download/v1.3.2/manta-1.3.2.release_src.tar.bz2"
|
|
||||||
|
|
||||||
version("1.6.0", sha256="c846d61b02483265c09d58bd85dacf5326a94f38179b5ae4f70694be96e1368f")
|
|
||||||
version("1.5.0", sha256="9aa1a59c9cb8d2dd33724a42959c9398aff7840c5bf3c895d2483a8093b3d2dc")
|
|
||||||
version("1.4.0", sha256="4f8f827485e3ad9a12318bfcbf62fa622263378767514eb938bc02ad5ad74f10")
|
|
||||||
version("1.3.2", sha256="eb346d1a44aff1180732dcd03864b89efc1245652e1993107fb60da4ad739f79")
|
|
||||||
version("1.3.1", sha256="9ba943623088e552a4b45bccea48125a0553905f4cc7ea86a9de567e155a5888")
|
|
||||||
version("1.3.0", sha256="3db4b5475c33e3aeeb5435969c74364af9d2d77dd3bcf8dc70bf44a851e450dd")
|
|
||||||
|
|
||||||
depends_on("cmake@2.8.12:", type="build")
|
|
||||||
depends_on("python@2.7.0:2.7", type=("build", "run"))
|
|
||||||
depends_on("zlib")
|
|
||||||
|
|
||||||
patch("for_aarch64.patch", when="target=aarch64:")
|
|
|
@ -93,7 +93,6 @@ class Mbedtls(MakefilePackage):
|
||||||
|
|
||||||
depends_on("perl", type="test")
|
depends_on("perl", type="test")
|
||||||
depends_on("python@3:", type="test", when="@3:")
|
depends_on("python@3:", type="test", when="@3:")
|
||||||
depends_on("python@:2", type="test", when="@:2")
|
|
||||||
|
|
||||||
# See https://github.com/Mbed-TLS/mbedtls/issues/4917
|
# See https://github.com/Mbed-TLS/mbedtls/issues/4917
|
||||||
# Only 2.16.12, 2.28.0 and 3.1.0 support clang 12.
|
# Only 2.16.12, 2.28.0 and 3.1.0 support clang 12.
|
||||||
|
|
|
@ -23,16 +23,8 @@ class Mercurial(PythonPackage):
|
||||||
version("5.1.1", sha256="35fc8ba5e0379c1b3affa2757e83fb0509e8ac314cbd9f1fd133cf265d16e49f")
|
version("5.1.1", sha256="35fc8ba5e0379c1b3affa2757e83fb0509e8ac314cbd9f1fd133cf265d16e49f")
|
||||||
version("4.9.1", sha256="1bdd21bb87d1e05fb5cd395d488d0e0cc2f2f90ce0fd248e31a03595da5ccb47")
|
version("4.9.1", sha256="1bdd21bb87d1e05fb5cd395d488d0e0cc2f2f90ce0fd248e31a03595da5ccb47")
|
||||||
version("4.4.1", sha256="8f2a5512d6cc2ffb08988aef639330a2f0378e4ac3ee0e1fbbdb64d9fff56246")
|
version("4.4.1", sha256="8f2a5512d6cc2ffb08988aef639330a2f0378e4ac3ee0e1fbbdb64d9fff56246")
|
||||||
version("4.1.2", sha256="09415253fb409a77e19b9951532a3c22c4e07e74bab80652527064617daab194")
|
|
||||||
version("3.9.1", sha256="625e4fc7e85ec2278c2828bdc547fce74091b3bbe4d9eeeba2d61af51195df74")
|
|
||||||
version("3.9", sha256="834f25dcff44994198fb8a7ba161a6e24204dbd63c8e6270577e06e6cedbdabc")
|
|
||||||
version("3.8.4", sha256="4b2e3ef19d34fa1d781cb7425506a05d4b6b1172bab69d6ea78874175fdf3da6")
|
|
||||||
version("3.8.3", sha256="f84556cdf9a331984261549d9d08143ab9da33d7c03f0aa323b0ee52d0782a4c")
|
|
||||||
version("3.8.2", sha256="cb78b16956140625266a8a6d1fadc7c868969d994086e1ec60279a66bf20bffd")
|
|
||||||
version("3.8.1", sha256="face1f058de5530b56b0dfd3b4d0b23d89590c588605c06f3d18b79e8c30d594")
|
|
||||||
|
|
||||||
depends_on("python+bz2+ssl+zlib@2.6:2.8", when="@:4.2", type=("build", "run"))
|
depends_on("python+bz2+ssl+zlib@2.7:2.8,3.5.3:3.5,3.6.2:", type=("build", "run"))
|
||||||
depends_on("python+bz2+ssl+zlib@2.7:2.8,3.5.3:3.5,3.6.2:", when="@4.3:", type=("build", "run"))
|
|
||||||
depends_on("py-setuptools", type="build")
|
depends_on("py-setuptools", type="build")
|
||||||
depends_on("py-docutils", type="build")
|
depends_on("py-docutils", type="build")
|
||||||
depends_on("py-pygments", type=("build", "run"))
|
depends_on("py-pygments", type=("build", "run"))
|
||||||
|
|
|
@ -28,7 +28,6 @@ class MlperfDeepcam(Package, CudaPackage):
|
||||||
depends_on("py-pillow", type=("build", "run"))
|
depends_on("py-pillow", type=("build", "run"))
|
||||||
depends_on("py-numpy", type=("build", "run"))
|
depends_on("py-numpy", type=("build", "run"))
|
||||||
depends_on("py-pillow", type=("build", "run"))
|
depends_on("py-pillow", type=("build", "run"))
|
||||||
depends_on("py-argparse", when="^python@:2.6,3.0:3.1", type=("build", "run"))
|
|
||||||
depends_on("py-pandas", type=("build", "run"))
|
depends_on("py-pandas", type=("build", "run"))
|
||||||
depends_on("py-apex", type=("build", "run"))
|
depends_on("py-apex", type=("build", "run"))
|
||||||
depends_on("py-wandb", type=("build", "run"))
|
depends_on("py-wandb", type=("build", "run"))
|
||||||
|
|
|
@ -1,100 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
from spack.pkg.builtin.boost import Boost
|
|
||||||
|
|
||||||
|
|
||||||
class MofemCephas(CMakePackage):
|
|
||||||
"""MoFEM is finite element core library"""
|
|
||||||
|
|
||||||
homepage = "http://mofem.eng.gla.ac.uk"
|
|
||||||
git = "https://bitbucket.org/likask/mofem-cephas.git"
|
|
||||||
|
|
||||||
maintainers = ["likask"]
|
|
||||||
|
|
||||||
version("develop", branch="develop")
|
|
||||||
version("0.8.17", tag="v0.8.17")
|
|
||||||
version("0.8.16", tag="v0.8.16")
|
|
||||||
version("0.8.15", tag="v0.8.15")
|
|
||||||
version("0.8.14", tag="v0.8.14")
|
|
||||||
version("0.8.13", tag="v0.8.13")
|
|
||||||
version("0.8.12", tag="v0.8.12")
|
|
||||||
version("0.8.11", tag="v0.8.11")
|
|
||||||
version("0.8.10", tag="v0.8.10")
|
|
||||||
version("0.8.9", tag="v0.8.9")
|
|
||||||
version("0.8.8", tag="v0.8.8")
|
|
||||||
version("0.8.7", tag="v0.8.7")
|
|
||||||
|
|
||||||
# This option can be only used for development of core lib
|
|
||||||
variant(
|
|
||||||
"copy_user_modules",
|
|
||||||
default=True,
|
|
||||||
description="Copy user modules directory " "instead of linking to source",
|
|
||||||
)
|
|
||||||
variant("adol-c", default=True, description="Compile with ADOL-C")
|
|
||||||
variant("tetgen", default=True, description="Compile with Tetgen")
|
|
||||||
variant("med", default=True, description="Compile with Med")
|
|
||||||
variant("slepc", default=False, description="Compile with Slepc")
|
|
||||||
|
|
||||||
depends_on("mpi")
|
|
||||||
depends_on("boost@:1.68")
|
|
||||||
|
|
||||||
# TODO: replace this with an explicit list of components of Boost,
|
|
||||||
# for instance depends_on('boost +filesystem')
|
|
||||||
# See https://github.com/spack/spack/pull/22303 for reference
|
|
||||||
depends_on(Boost.with_default_variants)
|
|
||||||
depends_on("parmetis")
|
|
||||||
# Fixed version of hdf5, to remove some problems with dependent
|
|
||||||
# packages, f.e. MED format
|
|
||||||
depends_on("hdf5@:1.8.19+hl+mpi+fortran")
|
|
||||||
depends_on("petsc@:3.9.3+mumps+mpi")
|
|
||||||
depends_on("slepc", when="+slepc")
|
|
||||||
depends_on("moab")
|
|
||||||
# Upper bound set to ADOL-C until issues with memory leaks
|
|
||||||
# for versions 2.6: fully resolved
|
|
||||||
depends_on("adol-c@2.5.2~examples", when="+adol-c")
|
|
||||||
depends_on("tetgen", when="+tetgen")
|
|
||||||
depends_on("med", when="+med")
|
|
||||||
|
|
||||||
extendable = True
|
|
||||||
|
|
||||||
root_cmakelists_dir = "mofem"
|
|
||||||
|
|
||||||
def cmake_args(self):
|
|
||||||
spec = self.spec
|
|
||||||
options = []
|
|
||||||
|
|
||||||
# obligatory options
|
|
||||||
options.extend(
|
|
||||||
[
|
|
||||||
"-DWITH_SPACK=YES",
|
|
||||||
"-DPETSC_DIR=%s" % spec["petsc"].prefix,
|
|
||||||
"-DPETSC_ARCH=",
|
|
||||||
"-DMOAB_DIR=%s" % spec["moab"].prefix,
|
|
||||||
"-DBOOST_DIR=%s" % spec["boost"].prefix,
|
|
||||||
]
|
|
||||||
)
|
|
||||||
|
|
||||||
# build tests
|
|
||||||
options.append(self.define("MOFEM_BUILD_TESTS", self.run_tests))
|
|
||||||
|
|
||||||
# variant packages
|
|
||||||
if "+adol-c" in spec:
|
|
||||||
options.append("-DADOL-C_DIR=%s" % spec["adol-c"].prefix)
|
|
||||||
|
|
||||||
if "+tetgen" in spec:
|
|
||||||
options.append("-DTETGEN_DIR=%s" % spec["tetgen"].prefix)
|
|
||||||
|
|
||||||
if "+med" in spec:
|
|
||||||
options.append("-DMED_DIR=%s" % spec["med"].prefix)
|
|
||||||
|
|
||||||
if "+slepc" in spec:
|
|
||||||
options.append("-DSLEPC_DIR=%s" % spec["slepc"].prefix)
|
|
||||||
|
|
||||||
# copy users modules, i.e. stand alone vs linked users modules
|
|
||||||
options.append(self.define_from_variant("STAND_ALLONE_USERS_MODULES", "copy_user_modules"))
|
|
||||||
return options
|
|
|
@ -1,102 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class MofemFractureModule(CMakePackage):
|
|
||||||
"""mofem fracture module"""
|
|
||||||
|
|
||||||
homepage = "http://mofem.eng.gla.ac.uk"
|
|
||||||
git = "https://bitbucket.org/likask/mofem_um_fracture_mechanics.git"
|
|
||||||
|
|
||||||
maintainers = ["likask"]
|
|
||||||
|
|
||||||
version("develop", branch="develop")
|
|
||||||
version("0.9.50", tag="v0.9.50")
|
|
||||||
version("0.9.49", tag="v0.9.49")
|
|
||||||
version("0.9.48", tag="v0.9.48")
|
|
||||||
version("0.9.47", tag="v0.9.47")
|
|
||||||
version("0.9.46", tag="v0.9.46")
|
|
||||||
version("0.9.45", tag="v0.9.45")
|
|
||||||
version("0.9.44", tag="v0.9.44")
|
|
||||||
version("0.9.42", tag="v0.9.42")
|
|
||||||
|
|
||||||
variant(
|
|
||||||
"copy_user_modules",
|
|
||||||
default=True,
|
|
||||||
description="Copy user modules directory instead linking",
|
|
||||||
)
|
|
||||||
|
|
||||||
extends("mofem-cephas")
|
|
||||||
depends_on("mofem-users-modules@0.8.17", when="@0.9.50")
|
|
||||||
depends_on("mofem-users-modules@0.8.16", when="@0.9.49")
|
|
||||||
depends_on("mofem-users-modules@0.8.15", when="@0.9.48")
|
|
||||||
depends_on("mofem-users-modules", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
# The CMakeLists.txt installed with mofem-cephas package set cmake
|
|
||||||
# environment to install extension from extension repository. It searches
|
|
||||||
# for modules in user provides paths, for example in Spack source path.Also
|
|
||||||
# it finds all cmake exported targets installed in lib directory, which are
|
|
||||||
# built with dependent extensions, f.e.mofem - users - modules or others if
|
|
||||||
# needed.
|
|
||||||
@property
|
|
||||||
def root_cmakelists_dir(self):
|
|
||||||
"""The relative path to the directory containing CMakeLists.txt
|
|
||||||
|
|
||||||
This path is relative to the root of the extracted tarball,
|
|
||||||
not to the ``build_directory``. Defaults to the current directory.
|
|
||||||
|
|
||||||
:return: directory containing CMakeLists.txt
|
|
||||||
"""
|
|
||||||
spec = self.spec
|
|
||||||
return spec["mofem-users-modules"].prefix.users_modules
|
|
||||||
|
|
||||||
def cmake_args(self):
|
|
||||||
spec = self.spec
|
|
||||||
|
|
||||||
# obligatory options
|
|
||||||
options = [
|
|
||||||
self.define("WITH_SPACK", True),
|
|
||||||
self.define("EXTERNAL_MODULES_BUILD", True),
|
|
||||||
self.define("UM_INSTALL_BREFIX", spec["mofem-users-modules"].prefix),
|
|
||||||
self.define("EXTERNAL_MODULE_SOURCE_DIRS", self.stage.source_path),
|
|
||||||
self.define_from_variant("STAND_ALLONE_USERS_MODULES", "copy_user_modules"),
|
|
||||||
]
|
|
||||||
|
|
||||||
# Set module version
|
|
||||||
if self.spec.version == Version("develop"):
|
|
||||||
options.extend(
|
|
||||||
[
|
|
||||||
"-DFM_VERSION_MAJOR=%s" % 0,
|
|
||||||
"-DFM_VERSION_MINOR=%s" % 0,
|
|
||||||
"-DFM_VERSION_BUILD=%s" % 0,
|
|
||||||
]
|
|
||||||
)
|
|
||||||
else:
|
|
||||||
options.extend(
|
|
||||||
[
|
|
||||||
"-DFM_VERSION_MAJOR=%s" % self.spec.version[0],
|
|
||||||
"-DFM_VERSION_MINOR=%s" % self.spec.version[1],
|
|
||||||
"-DFM_VERSION_BUILD=%s" % self.spec.version[2],
|
|
||||||
]
|
|
||||||
)
|
|
||||||
|
|
||||||
# build tests
|
|
||||||
options.append(self.define("MOFEM_UM_BUILD_TESTS", self.run_tests))
|
|
||||||
|
|
||||||
return options
|
|
||||||
|
|
||||||
# This function is not needed to run code installed by extension, nor in
|
|
||||||
# the install process. However, for users like to have access to source
|
|
||||||
# code to play, change and make it. Having source code at hand one can
|
|
||||||
# compile in own build directory it in package view when the extension is
|
|
||||||
# activated.
|
|
||||||
@run_after("install")
|
|
||||||
def copy_source_code(self):
|
|
||||||
source = self.stage.source_path
|
|
||||||
prefix = self.prefix
|
|
||||||
install_tree(source, prefix.ext_users_modules.fracture_mechanics)
|
|
|
@ -1,81 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class MofemMinimalSurfaceEquation(CMakePackage):
|
|
||||||
"""mofem minimal surface equation"""
|
|
||||||
|
|
||||||
homepage = "http://mofem.eng.gla.ac.uk"
|
|
||||||
git = "https://bitbucket.org/likask/mofem_um_minimal_surface_equation.git"
|
|
||||||
|
|
||||||
maintainers = ["likask"]
|
|
||||||
|
|
||||||
version("develop", branch="develop")
|
|
||||||
version("0.3.10", tag="v0.3.10")
|
|
||||||
version("0.3.9", tag="v0.3.9")
|
|
||||||
|
|
||||||
variant(
|
|
||||||
"copy_user_modules",
|
|
||||||
default=True,
|
|
||||||
description="Copy user modules directory instead linking",
|
|
||||||
)
|
|
||||||
|
|
||||||
extends("mofem-cephas")
|
|
||||||
depends_on("mofem-users-modules", type=("build", "link", "run"))
|
|
||||||
|
|
||||||
# The CMakeLists.txt installed with mofem - cephas package set cmake
|
|
||||||
# environment to install extension from extension repository.It searches
|
|
||||||
# for modules in user provides paths, for example in Spack source path.Also
|
|
||||||
# it finds all cmake exported targets installed in lib directory, which are
|
|
||||||
# built with dependent extensions, f.e.mofem - users - modules or others if
|
|
||||||
# needed.
|
|
||||||
@property
|
|
||||||
def root_cmakelists_dir(self):
|
|
||||||
"""The relative path to the directory containing CMakeLists.txt
|
|
||||||
|
|
||||||
This path is relative to the root of the extracted tarball,
|
|
||||||
not to the ``build_directory``. Defaults to the current directory.
|
|
||||||
|
|
||||||
:return: directory containing CMakeLists.txt
|
|
||||||
"""
|
|
||||||
spec = self.spec
|
|
||||||
return spec["mofem-users-modules"].prefix.users_modules
|
|
||||||
|
|
||||||
def cmake_args(self):
|
|
||||||
spec = self.spec
|
|
||||||
from_variant = self.define_from_variant
|
|
||||||
source = self.stage.source_path
|
|
||||||
|
|
||||||
options = []
|
|
||||||
|
|
||||||
# obligatory options
|
|
||||||
options.extend(
|
|
||||||
[
|
|
||||||
"-DWITH_SPACK=YES",
|
|
||||||
"-DEXTERNAL_MODULES_BUILD=YES",
|
|
||||||
"-DUM_INSTALL_BREFIX=%s" % spec["mofem-users-modules"].prefix,
|
|
||||||
"-DEXTERNAL_MODULE_SOURCE_DIRS=%s" % source,
|
|
||||||
from_variant("STAND_ALLONE_USERS_MODULES", "copy_user_modules"),
|
|
||||||
]
|
|
||||||
)
|
|
||||||
|
|
||||||
# build tests
|
|
||||||
options.append(self.define("MOFEM_UM_BUILD_TESTS", self.run_tests))
|
|
||||||
|
|
||||||
return options
|
|
||||||
|
|
||||||
# This function is not needed to run code installed by extension, nor in
|
|
||||||
# the install process. However, for users like to have access to source
|
|
||||||
# code to play, change and make it. Having source code at hand one can
|
|
||||||
# compile in own build directory it in package view when the extension is
|
|
||||||
# activated.
|
|
||||||
@run_after("install")
|
|
||||||
def copy_source_code(self):
|
|
||||||
source = self.stage.source_path
|
|
||||||
prefix = self.prefix
|
|
||||||
install_tree(source, prefix.ext_users_modules.minimal_surface_equation)
|
|
|
@ -1,80 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class MofemUsersModules(CMakePackage):
|
|
||||||
"""MofemUsersModules creates installation environment for user-provided
|
|
||||||
modules and extends of mofem-cephas package. For more information how to
|
|
||||||
work with Spack and MoFEM see
|
|
||||||
http://mofem.eng.gla.ac.uk/mofem/html/install_spack.html"""
|
|
||||||
|
|
||||||
homepage = "http://mofem.eng.gla.ac.uk"
|
|
||||||
git = "https://likask@bitbucket.org/mofem/users-modules-cephas.git"
|
|
||||||
|
|
||||||
version("develop", branch="develop")
|
|
||||||
version("0.8.17", commit="60b2341f1635f595d571096dd8c70a7cf7538aeb")
|
|
||||||
version("0.8.16", commit="f6af51ad7db5b5dbc9d9acc6e753277a857c9f24")
|
|
||||||
version("0.8.15", commit="4843b2d92ec21ad100a8d637698f56b3a2e14af3")
|
|
||||||
version("0.8.14", commit="cfaa32133c574a31beaeb36202d033280521ddff")
|
|
||||||
version("0.8.12", commit="7b2ce5595a95d1b919f50103513c44bb2bc9e6d2")
|
|
||||||
version("0.8.11", commit="329b06d758137f1ec830f157d383b5ea415963de")
|
|
||||||
version("0.8.10", commit="ca03a8222b20f9c8ff93a2d6f4c3babbcfde2058")
|
|
||||||
version("0.8.8", commit="eb40f3c218badcd528ab08ee952835fb2ff07fd3")
|
|
||||||
version("0.8.7", commit="a83b236f26f258f4d6bafc379ddcb9503088df56")
|
|
||||||
|
|
||||||
maintainers = ["likask"]
|
|
||||||
|
|
||||||
variant(
|
|
||||||
"copy_user_modules",
|
|
||||||
default=True,
|
|
||||||
description="Copy user modules directory instead linking",
|
|
||||||
)
|
|
||||||
|
|
||||||
extends("mofem-cephas")
|
|
||||||
depends_on("mofem-cephas@0.8.17", when="@0.8.17")
|
|
||||||
depends_on("mofem-cephas@0.8.16", when="@0.8.16")
|
|
||||||
depends_on("mofem-cephas@0.8.15", when="@0.8.15")
|
|
||||||
depends_on("mofem-cephas@0.8.14", when="@0.8.14")
|
|
||||||
depends_on("mofem-cephas@0.8.12:0.8.13", when="@0.8.12")
|
|
||||||
depends_on("mofem-cephas@0.8.11", when="@0.8.11")
|
|
||||||
depends_on("mofem-cephas@0.8.10", when="@0.8.10")
|
|
||||||
depends_on("mofem-cephas@0.8.8:0.8.9", when="@0.8.8")
|
|
||||||
depends_on("mofem-cephas@0.8.7", when="@0.8.7")
|
|
||||||
depends_on("mofem-cephas@develop", when="@develop")
|
|
||||||
|
|
||||||
def cmake_args(self):
|
|
||||||
spec = self.spec
|
|
||||||
from_variant = self.define_from_variant
|
|
||||||
|
|
||||||
options = []
|
|
||||||
|
|
||||||
# obligatory options
|
|
||||||
options.extend(
|
|
||||||
[
|
|
||||||
"-DMOFEM_DIR=%s" % spec["mofem-cephas"].prefix.users_module,
|
|
||||||
"-DWITH_SPACK=YES",
|
|
||||||
from_variant("STAND_ALLONE_USERS_MODULES", "copy_user_modules"),
|
|
||||||
]
|
|
||||||
)
|
|
||||||
|
|
||||||
# build tests
|
|
||||||
options.append(self.define("MOFEM_UM_BUILD_TESTS", self.run_tests))
|
|
||||||
|
|
||||||
return options
|
|
||||||
|
|
||||||
# This function is not needed to run code installed by extension, nor in
|
|
||||||
# the install process. However, the source code of users modules is
|
|
||||||
# necessary to compile other sub-modules. Also, for users like to have
|
|
||||||
# access to source code to play, change and make it. Having source code at
|
|
||||||
# hand one can compile in own build directory it in package view when the
|
|
||||||
# extension is activated.
|
|
||||||
@run_after("install")
|
|
||||||
def copy_source_code(self):
|
|
||||||
source = self.stage.source_path
|
|
||||||
prefix = self.prefix
|
|
||||||
install_tree(source, prefix.users_modules)
|
|
|
@ -1,20 +0,0 @@
|
||||||
From: Mike Hommey <mh@glandium.org>
|
|
||||||
Date: Fri, 18 Mar 2011 09:25:57 +0100
|
|
||||||
Subject: Bug 638056 - Avoid "The cacheFlush support is missing on this
|
|
||||||
platform" error on exotic platforms
|
|
||||||
|
|
||||||
---
|
|
||||||
js/src/Makefile.in | 2 +-
|
|
||||||
1 files changed, 1 insertions(+), 1 deletions(-)
|
|
||||||
|
|
||||||
--- a/js/src/Makefile.in
|
|
||||||
+++ b/js/src/Makefile.in
|
|
||||||
@@ -382,7 +382,7 @@ CPPSRCS += checks.cc \
|
|
||||||
# END enclude sources for V8 dtoa
|
|
||||||
#############################################
|
|
||||||
|
|
||||||
-ifeq (,$(filter-out powerpc sparc,$(TARGET_CPU)))
|
|
||||||
+ifeq (,$(filter arm %86 x86_64,$(TARGET_CPU)))
|
|
||||||
|
|
||||||
VPATH += $(srcdir)/assembler \
|
|
||||||
$(srcdir)/assembler/wtf \
|
|
|
@ -1,153 +0,0 @@
|
||||||
Description: Fix FTBFS with gcc6
|
|
||||||
Most fixes are returning NULL instead of false and a narrowing issues.
|
|
||||||
Author: Tobias Frost <tobi@debian.org>
|
|
||||||
Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811665
|
|
||||||
Last-Update: 2016-09-25
|
|
||||||
---
|
|
||||||
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
|
|
||||||
--- a/js/src/ctypes/CTypes.cpp
|
|
||||||
+++ b/js/src/ctypes/CTypes.cpp
|
|
||||||
@@ -4753,7 +4753,7 @@ NewFunctionInfo(JSContext* cx,
|
|
||||||
for (JSUint32 i = 0; i < argLength; ++i) {
|
|
||||||
bool isEllipsis;
|
|
||||||
if (!IsEllipsis(cx, argTypes[i], &isEllipsis))
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
if (isEllipsis) {
|
|
||||||
fninfo->mIsVariadic = true;
|
|
||||||
if (i < 1) {
|
|
||||||
--- a/js/src/jsapi.cpp
|
|
||||||
+++ b/js/src/jsapi.cpp
|
|
||||||
@@ -3985,7 +3985,7 @@ JS_Enumerate(JSContext *cx, JSObject *ob
|
|
||||||
AutoIdVector props(cx);
|
|
||||||
JSIdArray *ida;
|
|
||||||
if (!GetPropertyNames(cx, obj, JSITER_OWNONLY, &props) || !VectorToIdArray(cx, props, &ida))
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
for (size_t n = 0; n < size_t(ida->length); ++n)
|
|
||||||
JS_ASSERT(js_CheckForStringIndex(ida->vector[n]) == ida->vector[n]);
|
|
||||||
return ida;
|
|
||||||
--- a/js/src/jsfun.cpp
|
|
||||||
+++ b/js/src/jsfun.cpp
|
|
||||||
@@ -2051,7 +2051,7 @@ fun_toStringHelper(JSContext *cx, JSObje
|
|
||||||
|
|
||||||
JSString *str = JS_DecompileFunction(cx, fun, indent);
|
|
||||||
if (!str)
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
|
|
||||||
if (!indent)
|
|
||||||
cx->compartment->toSourceCache.put(fun, str);
|
|
||||||
@@ -2657,7 +2657,7 @@ LookupInterpretedFunctionPrototype(JSCon
|
|
||||||
const Shape *shape = funobj->nativeLookup(id);
|
|
||||||
if (!shape) {
|
|
||||||
if (!ResolveInterpretedFunctionPrototype(cx, funobj))
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
shape = funobj->nativeLookup(id);
|
|
||||||
}
|
|
||||||
JS_ASSERT(!shape->configurable());
|
|
||||||
--- a/js/src/jsiter.cpp
|
|
||||||
+++ b/js/src/jsiter.cpp
|
|
||||||
@@ -425,7 +425,7 @@ NewIteratorObject(JSContext *cx, uintN f
|
|
||||||
*/
|
|
||||||
JSObject *obj = js_NewGCObject(cx, FINALIZE_OBJECT0);
|
|
||||||
if (!obj)
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
obj->init(cx, &js_IteratorClass, NULL, NULL, NULL, false);
|
|
||||||
obj->setMap(cx->compartment->emptyEnumeratorShape);
|
|
||||||
return obj;
|
|
||||||
--- a/js/src/jsparse.cpp
|
|
||||||
+++ b/js/src/jsparse.cpp
|
|
||||||
@@ -3352,7 +3352,7 @@ Parser::functionDef(JSAtom *funAtom, Fun
|
|
||||||
if (!outertc->inFunction() && bodyLevel && funAtom && !lambda && outertc->compiling()) {
|
|
||||||
JS_ASSERT(pn->pn_cookie.isFree());
|
|
||||||
if (!DefineGlobal(pn, outertc->asCodeGenerator(), funAtom))
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
}
|
|
||||||
|
|
||||||
pn->pn_blockid = outertc->blockid();
|
|
||||||
--- a/js/src/jsstr.cpp
|
|
||||||
+++ b/js/src/jsstr.cpp
|
|
||||||
@@ -1734,7 +1734,7 @@ class RegExpGuard
|
|
||||||
if (flat) {
|
|
||||||
patstr = flattenPattern(cx, fm.patstr);
|
|
||||||
if (!patstr)
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
} else {
|
|
||||||
patstr = fm.patstr;
|
|
||||||
}
|
|
||||||
@@ -3408,7 +3408,7 @@ js_InitStringClass(JSContext *cx, JSObje
|
|
||||||
UndefinedValue(), NULL, NULL,
|
|
||||||
JSPROP_READONLY | JSPROP_PERMANENT | JSPROP_SHARED, 0, 0,
|
|
||||||
NULL)) {
|
|
||||||
- return JS_FALSE;
|
|
||||||
+ return NULL;
|
|
||||||
}
|
|
||||||
|
|
||||||
return proto;
|
|
||||||
--- a/js/src/jstypedarray.cpp
|
|
||||||
+++ b/js/src/jstypedarray.cpp
|
|
||||||
@@ -1334,7 +1334,7 @@ class TypedArrayTemplate
|
|
||||||
if (size != 0 && count >= INT32_MAX / size) {
|
|
||||||
JS_ReportErrorNumber(cx, js_GetErrorMessage, NULL,
|
|
||||||
JSMSG_NEED_DIET, "size and count");
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
}
|
|
||||||
|
|
||||||
int32 bytelen = size * count;
|
|
||||||
@@ -1668,7 +1668,7 @@ TypedArrayConstruct(JSContext *cx, jsint
|
|
||||||
|
|
||||||
default:
|
|
||||||
JS_NOT_REACHED("shouldn't have gotten here");
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
--- a/js/src/jsxml.cpp
|
|
||||||
+++ b/js/src/jsxml.cpp
|
|
||||||
@@ -282,7 +282,7 @@ NewXMLNamespace(JSContext *cx, JSLinearS
|
|
||||||
|
|
||||||
obj = NewBuiltinClassInstanceXML(cx, &js_NamespaceClass);
|
|
||||||
if (!obj)
|
|
||||||
- return JS_FALSE;
|
|
||||||
+ return NULL;
|
|
||||||
JS_ASSERT(JSVAL_IS_VOID(obj->getNamePrefixVal()));
|
|
||||||
JS_ASSERT(JSVAL_IS_VOID(obj->getNameURIVal()));
|
|
||||||
JS_ASSERT(JSVAL_IS_VOID(obj->getNamespaceDeclared()));
|
|
||||||
@@ -431,7 +431,7 @@ ConvertQNameToString(JSContext *cx, JSOb
|
|
||||||
size_t length = str->length();
|
|
||||||
jschar *chars = (jschar *) cx->malloc((length + 2) * sizeof(jschar));
|
|
||||||
if (!chars)
|
|
||||||
- return JS_FALSE;
|
|
||||||
+ return NULL;
|
|
||||||
*chars = '@';
|
|
||||||
const jschar *strChars = str->getChars(cx);
|
|
||||||
if (!strChars) {
|
|
||||||
--- a/js/src/methodjit/InvokeHelpers.cpp
|
|
||||||
+++ b/js/src/methodjit/InvokeHelpers.cpp
|
|
||||||
@@ -728,7 +728,7 @@ AtSafePoint(JSContext *cx)
|
|
||||||
{
|
|
||||||
JSStackFrame *fp = cx->fp();
|
|
||||||
if (fp->hasImacropc())
|
|
||||||
- return false;
|
|
||||||
+ return NULL;
|
|
||||||
|
|
||||||
JSScript *script = fp->script();
|
|
||||||
return script->maybeNativeCodeForPC(fp->isConstructing(), cx->regs->pc);
|
|
||||||
--- a/js/src/nanojit/NativeX64.cpp
|
|
||||||
+++ b/js/src/nanojit/NativeX64.cpp
|
|
||||||
@@ -1899,7 +1899,7 @@ namespace nanojit
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
- static const AVMPLUS_ALIGN16(int64_t) negateMask[] = {0x8000000000000000LL,0};
|
|
||||||
+ static const AVMPLUS_ALIGN16(int64_t) negateMask[] = {(int64_t) 0x8000000000000000ULL,0};
|
|
||||||
|
|
||||||
void Assembler::asm_fneg(LIns *ins) {
|
|
||||||
Register rr, ra;
|
|
|
@ -1,74 +0,0 @@
|
||||||
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
|
|
||||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
||||||
#
|
|
||||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
||||||
|
|
||||||
from spack.package import *
|
|
||||||
|
|
||||||
|
|
||||||
class Mozjs(AutotoolsPackage):
|
|
||||||
"""SpiderMonkey is Mozilla's JavaScript engine written in C/C++.
|
|
||||||
It is used in various Mozilla products, including Firefox, and is
|
|
||||||
available under the MPL2."""
|
|
||||||
|
|
||||||
homepage = "https://firefox-source-docs.mozilla.org/js/index.html"
|
|
||||||
|
|
||||||
version(
|
|
||||||
"24.2.0",
|
|
||||||
sha256="e62f3f331ddd90df1e238c09d61a505c516fe9fd8c5c95336611d191d18437d8",
|
|
||||||
url="https://ftp.mozilla.org/pub/js/mozjs-24.2.0.tar.bz2",
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"17.0.0",
|
|
||||||
sha256="321e964fe9386785d3bf80870640f2fa1c683e32fe988eeb201b04471c172fba",
|
|
||||||
url="https://ftp.mozilla.org/pub/js/mozjs17.0.0.tar.gz",
|
|
||||||
)
|
|
||||||
version(
|
|
||||||
"1.8.5",
|
|
||||||
sha256="5d12f7e1f5b4a99436685d97b9b7b75f094d33580227aa998c406bbae6f2a687",
|
|
||||||
url="https://ftp.mozilla.org/pub/js/js185-1.0.0.tar.gz",
|
|
||||||
)
|
|
||||||
|
|
||||||
depends_on("perl@5.6:", type="build")
|
|
||||||
depends_on("pkgconfig", type="build")
|
|
||||||
depends_on("python@2.7.3:2.8", type="build")
|
|
||||||
depends_on("zip", type="build")
|
|
||||||
depends_on("unzip", type="build")
|
|
||||||
depends_on("nspr", when="@:27")
|
|
||||||
depends_on("libffi@3.0.9:")
|
|
||||||
depends_on("readline", when="@17.0.0:")
|
|
||||||
depends_on("zlib@1.2.3")
|
|
||||||
|
|
||||||
configure_directory = "js/src"
|
|
||||||
build_directory = "js/src/spack-build"
|
|
||||||
|
|
||||||
patch("perl-bug.patch")
|
|
||||||
# Note: According to https://github.com/apache/couchdb-pkg/tree/master/js/rpm/SOURCES
|
|
||||||
# There is some patch for mozjs@1.8.5 to fix compile issue.
|
|
||||||
# Patches required to fix the issue:https://bugzilla.mozilla.org/show_bug.cgi?id=638056
|
|
||||||
patch(
|
|
||||||
"Bug-638056-Avoid-The-cacheFlush-support-is-missing-o.patch",
|
|
||||||
sha256="b1c869a65f5ebc10741d4631cc2e1e166c6ed53035cfa56bede55a4c19b7b118",
|
|
||||||
when="@1.8.5",
|
|
||||||
)
|
|
||||||
patch(
|
|
||||||
"fix-811665.patch",
|
|
||||||
sha256="2b298b8a693865b38e2b0d33277bb5ffe152c6ecf43648e85113fec586aa4752",
|
|
||||||
when="@1.8.5",
|
|
||||||
)
|
|
||||||
|
|
||||||
def configure_args(self):
|
|
||||||
spec = self.spec
|
|
||||||
config_args = [
|
|
||||||
"--enable-readline", # enables readline support in JS shell
|
|
||||||
"--enable-threadsafe", # enables support for multiple threads
|
|
||||||
"--enable-system-ffi",
|
|
||||||
"--with-system-zlib={0}".format(spec["zlib"].prefix),
|
|
||||||
"--with-system-nspr",
|
|
||||||
"--with-nspr-prefix={0}".format(spec["nspr"].prefix),
|
|
||||||
]
|
|
||||||
if spec.target.family == "aarch64":
|
|
||||||
config_args.append("--host=aarch64-linux-gnu")
|
|
||||||
if spec.satisfies("@1.8.5"):
|
|
||||||
config_args.append("--disable-readline")
|
|
||||||
return config_args
|
|
|
@ -1,21 +0,0 @@
|
||||||
Perl has deprecated the feature:
|
|
||||||
|
|
||||||
defined(@array)
|
|
||||||
|
|
||||||
In Perl 5.22+, this deprecation warning has been converted
|
|
||||||
to a fatal error. This results in the following error message:
|
|
||||||
|
|
||||||
Can't use 'defined(@array)' (Maybe you should just omit the defined()?) at milestone.pl line 58.
|
|
||||||
|
|
||||||
This patch takes the suggestion of omitting defined().
|
|
||||||
--- a/js/src/config/milestone.pl 2017-02-14 15:00:42.234275243 -0600
|
|
||||||
+++ b/js/src/config/milestone.pl 2017-02-14 15:01:19.453313360 -0600
|
|
||||||
@@ -55,7 +55,7 @@
|
|
||||||
#
|
|
||||||
my $milestone = Moz::Milestone::getOfficialMilestone($MILESTONE_FILE);
|
|
||||||
|
|
||||||
-if (defined(@TEMPLATE_FILE)) {
|
|
||||||
+if (@TEMPLATE_FILE) {
|
|
||||||
my $TFILE;
|
|
||||||
|
|
||||||
foreach $TFILE (@TEMPLATE_FILE) {
|
|
|
@ -17,7 +17,6 @@ class Mpip(AutotoolsPackage):
|
||||||
|
|
||||||
version("master", branch="master")
|
version("master", branch="master")
|
||||||
version("3.5", sha256="e366843d53fa016fb03903e51c8aac901aa5155edabe64698a8d6fa618a03bbd")
|
version("3.5", sha256="e366843d53fa016fb03903e51c8aac901aa5155edabe64698a8d6fa618a03bbd")
|
||||||
version("3.4.1", sha256="66a86dafde61546be80a130c46e4295f47fb764cf312ae62c70a6dc456a59dac")
|
|
||||||
|
|
||||||
variant("demangling", default=True, description="Build with demangling support")
|
variant("demangling", default=True, description="Build with demangling support")
|
||||||
|
|
||||||
|
@ -56,14 +55,12 @@ class Mpip(AutotoolsPackage):
|
||||||
conflicts("platform=darwin")
|
conflicts("platform=darwin")
|
||||||
|
|
||||||
# make-wrappers.py wrapper generator script requires python
|
# make-wrappers.py wrapper generator script requires python
|
||||||
depends_on("python@2:", when="@3.5:", type="build")
|
depends_on("python@2:", type="build")
|
||||||
depends_on("python@:2", when="@3.4.1", type="build")
|
|
||||||
depends_on("mpi")
|
depends_on("mpi")
|
||||||
|
|
||||||
# '+setjmp' adds '--disable-libunwind' to the confiure args
|
# '+setjmp' adds '--disable-libunwind' to the confiure args
|
||||||
depends_on("unwind", when="@3.5: +libunwind ~setjmp")
|
depends_on("unwind", when="+libunwind ~setjmp")
|
||||||
|
|
||||||
@when("@3.5:")
|
|
||||||
def configure_args(self):
|
def configure_args(self):
|
||||||
spec = self.spec
|
spec = self.spec
|
||||||
|
|
||||||
|
@ -122,21 +119,3 @@ def build_targets(self):
|
||||||
targets.append("shared")
|
targets.append("shared")
|
||||||
|
|
||||||
return targets
|
return targets
|
||||||
|
|
||||||
@when("@3.4.1")
|
|
||||||
def configure_args(self):
|
|
||||||
config_args = ["--without-f77"]
|
|
||||||
config_args.append("--with-cc=%s" % self.spec["mpi"].mpicc)
|
|
||||||
config_args.append("--with-cxx=%s" % self.spec["mpi"].mpicxx)
|
|
||||||
|
|
||||||
if "+demangling" in self.spec:
|
|
||||||
config_args.append("--enable-demangling")
|
|
||||||
else:
|
|
||||||
config_args.append("--disable-demangling")
|
|
||||||
|
|
||||||
if "+setjmp" in self.spec:
|
|
||||||
config_args.append("--enable-setjmp")
|
|
||||||
else:
|
|
||||||
config_args.append("--disable-setjmp")
|
|
||||||
|
|
||||||
return config_args
|
|
||||||
|
|
|
@ -110,7 +110,6 @@ class Mxnet(CMakePackage, CudaPackage):
|
||||||
depends_on("python@3.6:", when="@2.0.0:+python", type=("build", "run"))
|
depends_on("python@3.6:", when="@2.0.0:+python", type=("build", "run"))
|
||||||
depends_on("py-pip", when="+python", type="build")
|
depends_on("py-pip", when="+python", type="build")
|
||||||
depends_on("py-wheel", when="+python", type="build")
|
depends_on("py-wheel", when="+python", type="build")
|
||||||
depends_on("py-contextvars", when="@2.0.0:+python ^python@3.6.0:3.6", type=("build", "run"))
|
|
||||||
depends_on("py-setuptools", when="+python", type="build")
|
depends_on("py-setuptools", when="+python", type="build")
|
||||||
depends_on("py-cython", when="+python", type="build")
|
depends_on("py-cython", when="+python", type="build")
|
||||||
depends_on("py-numpy@1.17:", when="@2.0.0:+python", type=("build", "run"))
|
depends_on("py-numpy@1.17:", when="@2.0.0:+python", type=("build", "run"))
|
||||||
|
|
|
@ -38,13 +38,6 @@ class NodeJs(Package):
|
||||||
version("12.18.3", sha256="6ea85f80e01b007cc9b566b8836513bc5102667d833bad4c1092be60fa60c2d4")
|
version("12.18.3", sha256="6ea85f80e01b007cc9b566b8836513bc5102667d833bad4c1092be60fa60c2d4")
|
||||||
version("12.16.0", sha256="ae2dfe74485d821d4fef7cf1802acd2322cd994c853a2327c4306952f4453441")
|
version("12.16.0", sha256="ae2dfe74485d821d4fef7cf1802acd2322cd994c853a2327c4306952f4453441")
|
||||||
version("12.14.0", sha256="5c1939867228f3845c808ef84a89c8ee93cc35f857bf7587ecee1b5a6d9da67b")
|
version("12.14.0", sha256="5c1939867228f3845c808ef84a89c8ee93cc35f857bf7587ecee1b5a6d9da67b")
|
||||||
version("11.1.0", sha256="3f53b5ac25b2d36ad538267083c0e603d9236867a936c22a9116d95fa10c60d5")
|
|
||||||
version("10.13.0", sha256="aa06825fff375ece7c0d881ae0de5d402a857e8cabff9b4a50f2f0b7b44906be")
|
|
||||||
version("8.11.4", sha256="459144e361d64ca7362c37cc9717c044ef909d348cb5aa3f2b62538560a6085a")
|
|
||||||
version("8.9.1", sha256="32491b7fcc4696b2cdead45c47e52ad16bbed8f78885d32e873952fee0f971e1")
|
|
||||||
version("7.1.0", sha256="595e7e2a37d1e0573044a90077bb12c0f750e5d8851899ffa74038238da9a983")
|
|
||||||
version("6.3.0", sha256="4ed7a99985f8afee337cc22d5fef61b495ab4238dfff3750ac9019e87fc6aae6")
|
|
||||||
version("6.2.2", sha256="b6baee57a0ede496c7c7765001f7495ad74c8dfe8c34f1a6fb2cd5d8d526ffce")
|
|
||||||
|
|
||||||
variant("debug", default=False, description="Include debugger support")
|
variant("debug", default=False, description="Include debugger support")
|
||||||
variant("doc", default=False, description="Compile with documentation")
|
variant("doc", default=False, description="Compile with documentation")
|
||||||
|
@ -66,12 +59,10 @@ class NodeJs(Package):
|
||||||
depends_on("gmake@3.81:", type="build")
|
depends_on("gmake@3.81:", type="build")
|
||||||
depends_on("libtool", type="build", when=sys.platform != "darwin")
|
depends_on("libtool", type="build", when=sys.platform != "darwin")
|
||||||
depends_on("pkgconfig", type="build")
|
depends_on("pkgconfig", type="build")
|
||||||
depends_on("python@2.7:2.8,3.5:", when="@12:", type="build")
|
depends_on("python@2.7:2.8,3.5:", type="build")
|
||||||
depends_on("python@2.7:2.8", when="@:11", type="build")
|
|
||||||
# depends_on('bash-completion', when="+bash-completion")
|
# depends_on('bash-completion', when="+bash-completion")
|
||||||
depends_on("icu4c", when="+icu4c")
|
depends_on("icu4c", when="+icu4c")
|
||||||
depends_on("openssl@1.0.2d:1.0", when="@:9+openssl")
|
depends_on("openssl@1.1:", when="+openssl")
|
||||||
depends_on("openssl@1.1:", when="@10:+openssl")
|
|
||||||
depends_on("zlib", when="+zlib")
|
depends_on("zlib", when="+zlib")
|
||||||
|
|
||||||
phases = ["configure", "build", "install"]
|
phases = ["configure", "build", "install"]
|
||||||
|
@ -79,7 +70,7 @@ class NodeJs(Package):
|
||||||
# https://github.com/spack/spack/issues/19310
|
# https://github.com/spack/spack/issues/19310
|
||||||
conflicts(
|
conflicts(
|
||||||
"%gcc@:4.8",
|
"%gcc@:4.8",
|
||||||
msg="fails to build with gcc 4.8 " "(see https://github.com/spack/spack/issues/19310",
|
msg="fails to build with gcc 4.8 (see https://github.com/spack/spack/issues/19310",
|
||||||
)
|
)
|
||||||
|
|
||||||
def setup_build_environment(self, env):
|
def setup_build_environment(self, env):
|
||||||
|
@ -135,10 +126,7 @@ def configure_args(self):
|
||||||
return args
|
return args
|
||||||
|
|
||||||
def configure(self, spec, prefix):
|
def configure(self, spec, prefix):
|
||||||
if self.version >= Version("10.11.0"):
|
python("configure.py", *self.configure_args())
|
||||||
python("configure.py", *self.configure_args())
|
|
||||||
else:
|
|
||||||
python("configure", *self.configure_args())
|
|
||||||
|
|
||||||
def build(self, spec, prefix):
|
def build(self, spec, prefix):
|
||||||
make()
|
make()
|
||||||
|
|
|
@ -20,7 +20,6 @@ class Nrm(PythonPackage):
|
||||||
depends_on("py-pyyaml", type=("build", "run"))
|
depends_on("py-pyyaml", type=("build", "run"))
|
||||||
depends_on("py-tornado@5.1.1", type=("build", "run"))
|
depends_on("py-tornado@5.1.1", type=("build", "run"))
|
||||||
depends_on("py-numpy", type=("build", "run"))
|
depends_on("py-numpy", type=("build", "run"))
|
||||||
depends_on("py-argparse@1.2.1:", type=("build", "run"), when="^python@:2.6,3.0:3.1")
|
|
||||||
depends_on("py-jsonschema@2.6.0", type=("build", "run"))
|
depends_on("py-jsonschema@2.6.0", type=("build", "run"))
|
||||||
depends_on("py-warlock", type=("build", "run"))
|
depends_on("py-warlock", type=("build", "run"))
|
||||||
depends_on("py-scipy", type=("build", "run"))
|
depends_on("py-scipy", type=("build", "run"))
|
||||||
|
|
Some files were not shown because too many files have changed in this diff Show more
Loading…
Reference in a new issue