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bowtie : Fix for aarch64 (#18709)

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t-nojiri 2020-09-18 01:42:32 +09:00 committed by GitHub
parent 7c01c64d53
commit b66d756da6
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2 changed files with 5 additions and 5 deletions
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6
var/spack/repos/builtin/packages/bowtie/fix_narrowing_err_1.3.0.patch
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@ -1,11 +1,11 @@
--- a/alphabet.cpp 2020-07-28 15:02:56.137635525 -0400
+++ b/alphabet.cpp 2020-07-28 15:05:32.385589360 -0400
--- spack-src/alphabet.cpp.bak 2020-07-23 11:52:57.000000000 +0900
+++ spack-src/alphabet.cpp 2020-09-16 17:05:52.093190703 +0900
@@ -274,7 +274,7 @@
const char *iupacs = "!ACMGRSVTWYHKDBN!acmgrsvtwyhkdbn";
signed char mask2iupac[16] = {
- -1,
+ static_cast<char>(-1),
+ static_cast<signed char>(-1),
'A', // 0001
'C', // 0010
'M', // 0011

4
var/spack/repos/builtin/packages/bowtie/package.py
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@ -48,10 +48,10 @@ class Bowtie(MakefilePackage):
# correspond to 'aarch64' architecture
# reference: https://github.com/BenLangmead/bowtie/pull/13
patch('for_aarch64.patch', when='target=aarch64:')
patch('for_aarch64.patch', when='@1.2:1.2.999 target=aarch64:')
# measures for narrowing error
patch('fix_narrowing_err.patch', when='@:1.2.3')
patch('fix_narrowing_err.patch', when='@1.2.1:1.2.3')
patch('fix_narrowing_err_1.3.0.patch', when='@1.3.0:')
def edit(self, spec, prefix):