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r-acgh: Create new package. (#5619)

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lingnanyuan 2017-10-05 11:22:03 -05:00 committed by Christoph Junghans
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RAcgh(RPackage):
"""Functions for reading aCGH data from image analysis output files
and clone information files, creation of aCGH S3 objects for storing
these data. Basic methods for accessing/replacing, subsetting,
printing and plotting aCGH objects."""
homepage = "https://www.bioconductor.org/packages/aCGH/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/aCGH_1.54.0.tar.gz"
version('1.54.0', '8e5bd1800b2760e46fcab4179c2e920c')
depends_on('r-cluster', type=('build', 'run'))
depends_on('r-survival', type=('build', 'run'))
depends_on('r-multtest', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))