diff --git a/var/spack/repos/builtin/packages/spaceranger/package.py b/var/spack/repos/builtin/packages/spaceranger/package.py new file mode 100644 index 0000000000..9b02fc0942 --- /dev/null +++ b/var/spack/repos/builtin/packages/spaceranger/package.py @@ -0,0 +1,38 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +import os + +from spack.package import * + + +class Spaceranger(Package): + """Space Ranger is a set of analysis pipelines that process Visium data with brightfield + and fluorescence microscope images. Space Ranger allows users to map the whole + transcriptome in formalin fixed paraffin embedded (FFPE) and fresh frozen (FF) tissues. + + This package requires the user to accept a license and to download the tarball manually. + Once downloaded, the file should be placed within a manual mirror or within the current + directory. For instructions on making a manual mirror, see + https://spack.readthedocs.io/en/latest/mirrors.html""" + + homepage = "https://www.10xgenomics.com/support/software/space-ranger/latest" + manual_download = True + license_url = "support.10xgenomics.com/license" + + version("2.1.1", sha256="e3c2982ae91afc4031f7b29e4b27ea012243e1c61ca8fa246b8c1f6ef7c7c241") + + # spaceranger is distributed as precompiled binaries that are not compatible with + # processors without the avx instruction set ... + # https://www.10xgenomics.com/support/software/space-ranger/downloads/space-ranger-system-requirements + conflicts("target=:k10") # last AMD processor not to support avx + conflicts("target=:westmere") # last Intel processor not to support avx + conflicts("target=:x86_64_v2") # last generic architecture not to support avx + + def url_for_version(self, version): + return "file://{0}/spaceranger-{1}.tar.gz".format(os.getcwd(), version) + + def install(self, spec, prefix): + install_tree(".", prefix)