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bioconductor-dupradar, bioconductor-rsubread: add packages (#39206)

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* bioconductor-dupradar, bioconductor-rsubread: add packages
* [@spackbot] updating style on behalf of pabloaledo
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pabloaledo 2023-08-02 19:22:27 +02:00 committed by GitHub
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commit a7a5a994dc
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var/spack/repos/builtin/packages/bioconductor-dupradar/package.py Normal file
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class BioconductorDupradar(RPackage):
"""Assessment of duplication rates in RNA-Seq datasets"""
homepage = "https://bioconductor.org/packages/3.16/bioc/html/dupRadar.html"
url = "https://bioconductor.org/packages/release/bioc/src/contrib/dupRadar_1.30.0.tar.gz"
bioc = "dupradar"
version("1.30.0", sha256="a299d7a4578047dfc19237e34255b0f50f70ce41d29762ef9f5a7741ba35aa3d")
depends_on("r-kernsmooth")
depends_on("subread")
depends_on("bioconductor-rsubread")

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var/spack/repos/builtin/packages/bioconductor-rsubread/package.py Normal file
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class BioconductorRsubread(RPackage):
"""Mapping, quantification and variant analysis of sequencing data"""
homepage = "https://bioconductor.org/packages/3.16/bioc/html/Rsubread.html"
url = "https://bioconductor.org/packages/release/bioc/src/contrib/Rsubread_2.14.2.tar.gz"
bioc = "rsubread"
depends_on("r-matrix")
depends_on("zlib")
version("2.14.2", sha256="ac8be0fad0eb2743443e3a60a9a94eec78c746638aaccca70e7166d034dcebb5")