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r-affxparser: Create new package. (#5641)

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lingnanyuan 2017-10-06 21:13:38 -05:00 committed by Christoph Junghans
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RAffxparser(RPackage):
"""Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR).
It provides methods for fast and memory efficient parsing of
Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII-
and binary-based files are supported. Currently, there are methods
for reading chip definition file (CDF) and a cell intensity file (CEL).
These files can be read either in full or in part. For example,
probe signals from a few probesets can be extracted very quickly
from a set of CEL files into a convenient list structure."""
homepage = "https://www.bioconductor.org/packages/affxparser/"
url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/affxparser_1.48.0.tar.gz"
list_url = homepage
version('1.48.0', '20ae3f61e3ea25c3baeabf949b1f1165')