Add athena package (#12663)
* Add athena package * Flake8 fix * Fix missing separator error * Add master branch
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Adam J. Stewart
GitHub
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2 changed files with 239 additions and 0 deletions
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diff --git a/Makeoptions.in b/Makeoptions.in
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index b680132..4d1aa4e 100644
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--- a/Makeoptions.in
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+++ b/Makeoptions.in
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@@ -96,7 +96,7 @@ ifeq ($(MACHINE),macosx)
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FFTWLIB = -L/opt/local/lib -lfftw3
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FFTWINC = -I/opt/local/include
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else
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- abort Unsupported MACHINE=$(MACHINE)
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+ $(abort Unsupported MACHINE=$(MACHINE))
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endif
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endif
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endif
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226
var/spack/repos/builtin/packages/athena/package.py
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226
var/spack/repos/builtin/packages/athena/package.py
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Athena(AutotoolsPackage):
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"""Athena is a grid-based code for astrophysical magnetohydrodynamics
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(MHD). It was developed primarily for studies of the interstellar medium,
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star formation, and accretion flows."""
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homepage = "https://princetonuniversity.github.io/Athena-Cversion/"
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url = "https://github.com/PrincetonUniversity/Athena-Cversion/archive/version-4.2.tar.gz"
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git = "https://github.com/PrincetonUniversity/Athena-Cversion.git"
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version('master', branch='master')
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version('4.2', sha256='6334848d7f1325aa44859418feac8ce223b56793ae8907103000af5b27f50e7e')
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# PHYSICS "packages":
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variant('problem', default='linear_wave', description='Problem generator',
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values=[
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'blast', 'carbuncle', 'collapse3d', 'cpaw', 'cshock1d',
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'current_sheet', 'cyladvect', 'cylblast', 'cylbphi', 'cylbr',
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'cylcvmri', 'cyldiff', 'cylfieldloop', 'cylnewtmri', 'cylrayleigh',
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'cylspiral', 'cylwind', 'cylwindrot', 'cylwindrotb', 'dmr', 'fft_test',
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'field_loop', 'firehose', 'hall_drift', 'hb3', 'hgb', 'hkdisk',
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'jeans', 'jet', 'kh', 'linear_wave', 'lw_implode', 'msa', 'noh',
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'orszag-tang', 'par_collision', 'par_epicycle', 'par_strat2d',
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'par_strat3d', 'pgflow', 'rotor', 'rt', 'shk_cloud', 'shkset1d',
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'shkset2d', 'shkset3d', 'shu-osher', 'strat', 'streaming2d_multi',
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'streaming2d_single', 'streaming3d_multi', 'streaming3d_single',
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'twoibw'])
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variant('gas', default='mhd', description='Gas properties',
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values=['mhd', 'hydro'])
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variant('eos', default='adiabatic', description='Equation of state',
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values=['adiabatic', 'isothermal'])
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variant('nscalars', default=0, description='Number of advected scalars')
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variant('gravity', default='none', description='Algorithm for self gravity',
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values=['fft', 'fft_disk', 'fft_obc', 'multigrid', 'none'])
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variant('particles', default='none',
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description='Dust particle integration algorithm',
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values=['feedback', 'passive', 'none'])
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variant('coord', default='cartesian', description='Coordinate System',
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values=['cartesian', 'cylindrical'])
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# PHYSICS "features":
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variant('conduction', default=False, description='Enable thermal conduction')
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variant('resistivity', default=False, description='Enable resistivity')
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variant('special_relativity', default=False, description='Enable special relativistic hydro or MHD')
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variant('viscosity', default=False, description='Enable viscosity')
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# ALGORITHM "packages":
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variant('order', default='2',
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description='Order and type of spatial reconstruction',
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values=['1', '2', '3', '2p', '3p'])
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variant('flux', default='roe', description='Flux function',
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values=['roe', 'hllc', 'hlld', 'hlle', 'force', 'exact',
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'two-shock'])
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variant('integrator', default='ctu',
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description='Unsplit integration algorithm',
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values=['ctu', 'vl'])
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variant('cflags', default='opt', description='Compiler flags',
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values=['opt', 'debug', 'profile'])
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# ALGORITHM "features":
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variant('fargo', default=False, description='Enable FARGO algorithm')
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variant('fft', default=False, description='Use FFTW block decomposition')
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variant('fofc', default=False, description='Enable first-order flux correction')
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variant('ghost', default=False, description='Write ghost zones')
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variant('h_correction', default=False, description='Turn on H-correction')
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variant('mpi', default=True, description='Enable MPI parallelization')
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variant('shearing_box', default=False, description='Turn on shearing-box')
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variant('single', default=False, description='Use single-precision instead of double-precision')
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variant('sts', default=False, description='Turn on super timestepping')
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variant('smr', default=False, description='Use static mesh refinement')
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variant('rotating_frame', default=False, description='Turn on rotating_frame')
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variant('l1_inflow', default=False, description='Enable inflow from L1 point')
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depends_on('autoconf', type='build')
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depends_on('automake', type='build')
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depends_on('libtool', type='build')
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depends_on('m4', type='build')
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depends_on('mpi', when='+mpi')
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depends_on('fftw', when='+fft')
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conflicts('flux=hllc', when='gas=mhd')
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conflicts('flux=exact', when='gas=mhd')
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conflicts('flux=two-shock', when='gas=mhd')
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conflicts('+h_correction', when='flux=hllc')
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conflicts('+h_correction', when='flux=hlld')
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conflicts('+h_correction', when='flux=hlle')
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conflicts('+h_correction', when='flux=force')
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conflicts('+h_correction', when='flux=exact')
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conflicts('+h_correction', when='flux=two-shock')
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conflicts('coord=cylindrical', when='gravity=none')
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conflicts('coord=cylindrical', when='particles=none')
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conflicts('integrator=vl', when='order=3')
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conflicts('integrator=vl', when='order=2')
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build_targets = ['all']
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patch('missing-separator.patch')
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def setup_environment(self, spack_env, run_env):
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spec = self.spec
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spack_env.set('OPT', '-O3')
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if '+mpi' in spec:
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spack_env.set('CC', spec['mpi'].mpicc)
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spack_env.set('LDR', spec['mpi'].mpicc)
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spack_env.set('MPILIB', spec['mpi'].libs.ld_flags)
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spack_env.set('MPIINC', spec['mpi'].headers.include_flags)
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else:
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spack_env.set('CC', spack_cc)
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spack_env.set('LDR', spack_cc)
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if '+fft' in spec:
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spack_env.set('FFTWLIB', spec['fftw'].libs.ld_flags)
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spack_env.set('FFTWINC', spec['fftw'].headers.include_flags)
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def configure_args(self):
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spec = self.spec
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args = []
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if '+conduction' in spec:
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args.append('--enable-conduction')
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else:
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args.append('--disable-conduction')
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if '+resistivity' in spec:
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args.append('--enable-resistivity')
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else:
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args.append('--disable-resistivity')
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if '+special_relativity' in spec:
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args.append('--enable-special-relativity')
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else:
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args.append('--disable-special-relativity')
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if '+viscosity' in spec:
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args.append('--enable-viscosity')
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else:
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args.append('--disable-viscosity')
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if '+single' in spec:
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args.append('--enable-single')
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else:
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args.append('--disable-single')
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if '+ghost' in spec:
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args.append('--enable-ghost')
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else:
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args.append('--disable-ghost')
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if '+mpi' in spec:
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args.append('--enable-mpi')
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else:
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args.append('--disable-mpi')
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if '+h_correction' in spec:
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args.append('--enable-h-correction')
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else:
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args.append('--disable-h-correction')
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if '+fft' in spec:
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args.append('--enable-fft')
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else:
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args.append('--disable-fft')
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if '+shearing_box' in spec:
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args.append('--enable-shearing-box')
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else:
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args.append('--disable-shearing-box')
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if '+fargo' in spec:
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args.append('--enable-fargo')
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else:
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args.append('--disable-fargo')
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if '+sts' in spec:
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args.append('--enable-sts')
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else:
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args.append('--disable-sts')
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if '+smr' in spec:
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args.append('--enable-smr')
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else:
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args.append('--disable-smr')
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if '+fofc' in spec:
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args.append('--enable-fofc')
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else:
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args.append('--disable-fofc')
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if '+rotating_frame' in spec:
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args.append('--enable-rotating_frame')
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else:
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args.append('--disable-rotating_frame')
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if '+l1_inflow' in spec:
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args.append('--enable-l1_inflow')
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else:
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args.append('--disable-l1_inflow')
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args.extend([
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'--with-problem=' + spec.variants['problem'].value,
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'--with-gas=' + spec.variants['gas'].value,
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'--with-eos=' + spec.variants['eos'].value,
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'--with-nscalars=' + spec.variants['nscalars'].value,
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'--with-gravity=' + spec.variants['gravity'].value,
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'--with-particles=' + spec.variants['particles'].value,
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'--with-coord=' + spec.variants['coord'].value,
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'--with-order=' + spec.variants['order'].value,
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'--with-flux=' + spec.variants['flux'].value,
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'--with-integrator=' + spec.variants['integrator'].value,
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'--with-cflags=' + spec.variants['cflags'].value,
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])
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return args
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install('bin/athena', prefix.bin)
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