Merge pull request #1044 from adamjstewart/features/sncosmo
Add py-sncosmo package
This commit is contained in:
Todd Gamblin
GitHub
commit
9a8d109650
9 changed files with 434 additions and 103 deletions
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@ -24,29 +24,38 @@
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##############################################################################
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from spack import *
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class PyAstropy(Package):
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"""
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The Astropy Project is a community effort to develop a single core
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package for Astronomy in Python and foster interoperability between
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Python astronomy packages.
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"""
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homepage = 'http://www.astropy.org/'
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class PyAstropy(Package):
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"""The Astropy Project is a community effort to develop a single core
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package for Astronomy in Python and foster interoperability between
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Python astronomy packages."""
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homepage = 'http://www.astropy.org/'
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url = 'https://pypi.python.org/packages/source/a/astropy/astropy-1.1.2.tar.gz'
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version('1.1.2', 'cbe32023b5b1177d1e2498a0d00cda51')
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version('1.1.post1', 'b52919f657a37d45cc45f5cb0f58c44d')
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def url_for_version(self, version):
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return 'https://pypi.python.org/packages/source/a/astropy/astropy-{0}.tar.gz'.format(version)
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# Required dependencies
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extends('python')
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depends_on('py-numpy')
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# Optional dependencies
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depends_on('py-h5py')
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depends_on('py-beautifulsoup4')
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depends_on('py-pyyaml')
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depends_on('py-scipy')
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depends_on('libxml2')
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depends_on('py-matplotlib')
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depends_on('py-pytz')
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depends_on('py-scikit-image')
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depends_on('py-pandas')
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# System dependencies
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depends_on('cfitsio')
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depends_on('expat')
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depends_on('py-h5py')
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depends_on('py-numpy')
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depends_on('py-scipy')
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def install(self, spec, prefix):
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python('setup.py', 'build', '--use-system-cfitsio',
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'--use-system-expat')
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python('setup.py', 'install', '--prefix=' + prefix)
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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@ -0,0 +1,41 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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||||
# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyBeautifulsoup4(Package):
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"""Beautiful Soup is a Python library for pulling data out of HTML and
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XML files. It works with your favorite parser to provide idiomatic ways
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of navigating, searching, and modifying the parse tree."""
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homepage = "https://www.crummy.com/software/BeautifulSoup"
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url = "https://pypi.python.org/packages/source/b/beautifulsoup4/beautifulsoup4-4.4.1.tar.gz"
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version('4.4.1', '8fbd9a7cac0704645fa20d1419036815')
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extends('python')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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41
var/spack/repos/builtin/packages/py-emcee/package.py
Normal file
41
var/spack/repos/builtin/packages/py-emcee/package.py
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@ -0,0 +1,41 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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||||
# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
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||||
# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyEmcee(Package):
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"""emcee is an MIT licensed pure-Python implementation of Goodman & Weare's
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Affine Invariant Markov chain Monte Carlo (MCMC) Ensemble sampler."""
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homepage = "http://dan.iel.fm/emcee/current/"
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url = "https://pypi.python.org/packages/source/e/emcee/emcee-2.1.0.tar.gz"
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version('2.1.0', 'c6b6fad05c824d40671d4a4fc58dfff7')
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extends('python')
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depends_on('py-numpy')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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@ -23,23 +23,42 @@
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import re
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class PyH5py(Package):
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"""The h5py package provides both a high- and low-level interface to the HDF5 library from Python."""
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"""The h5py package provides both a high- and low-level interface to the
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HDF5 library from Python."""
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homepage = "https://pypi.python.org/pypi/h5py"
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url = "https://pypi.python.org/packages/source/h/h5py/h5py-2.4.0.tar.gz"
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version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758')
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version('2.6.0', 'ec476211bd1de3f5ac150544189b0bf4')
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version('2.5.0', '6e4301b5ad5da0d51b0a1e5ac19e3b74')
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version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758')
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extends('python', ignore=lambda f: re.match(r'bin/cy*', f))
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depends_on('hdf5')
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depends_on('py-numpy')
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depends_on('py-cython')
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variant('mpi', default=False, description='Build with MPI support')
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extends('python')
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# Build dependencies
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depends_on('py-cython@0.19:')
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depends_on('pkg-config')
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depends_on('hdf5@1.8.4:+mpi', when='+mpi')
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depends_on('hdf5@1.8.4:~mpi', when='~mpi')
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depends_on('mpi', when='+mpi')
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# Build and runtime dependencies
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depends_on('py-numpy@1.6.1:')
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# Runtime dependencies
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depends_on('py-six')
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depends_on('py-pkgconfig')
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def install(self, spec, prefix):
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python('setup.py', 'configure', '--hdf5=%s' % spec['hdf5'].prefix)
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python('setup.py', 'install', '--prefix=%s' % prefix)
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python('setup.py', 'configure',
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'--hdf5={0}'.format(spec['hdf5'].prefix))
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if '+mpi' in spec:
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env['CC'] = spec['mpi'].mpicc
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python('setup.py', 'configure', '--mpi')
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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46
var/spack/repos/builtin/packages/py-iminuit/package.py
Normal file
46
var/spack/repos/builtin/packages/py-iminuit/package.py
Normal file
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@ -0,0 +1,46 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
|
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#
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||||
# This program is free software; you can redistribute it and/or modify
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||||
# it under the terms of the GNU Lesser General Public License (as
|
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# published by the Free Software Foundation) version 2.1, February 1999.
|
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#
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# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
|
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyIminuit(Package):
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"""Interactive IPython-Friendly Minimizer based on SEAL Minuit2."""
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homepage = "https://pypi.python.org/pypi/iminuit"
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url = "https://pypi.python.org/packages/source/i/iminuit/iminuit-1.2.tar.gz"
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version('1.2', '4701ec472cae42015e26251703e6e984')
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# Required dependencies
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extends('python')
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depends_on('py-setuptools')
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# Optional dependencies
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depends_on('py-numpy')
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depends_on('py-matplotlib')
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depends_on('py-cython')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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44
var/spack/repos/builtin/packages/py-nestle/package.py
Normal file
44
var/spack/repos/builtin/packages/py-nestle/package.py
Normal file
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@ -0,0 +1,44 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
|
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#
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||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
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# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyNestle(Package):
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"""Nested sampling algorithms for evaluating Bayesian evidence."""
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homepage = "http://kbarbary.github.io/nestle/"
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url = "https://pypi.python.org/packages/source/n/nestle/nestle-0.1.1.tar.gz"
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version('0.1.1', '4875c0f9a0a8e263c1d7f5fa6ce604c5')
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# Required dependencies
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extends('python')
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depends_on('py-numpy')
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# Optional dependencies
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depends_on('py-scipy')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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51
var/spack/repos/builtin/packages/py-sncosmo/package.py
Normal file
51
var/spack/repos/builtin/packages/py-sncosmo/package.py
Normal file
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@ -0,0 +1,51 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
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# For details, see https://github.com/llnl/spack
|
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# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
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# This program is distributed in the hope that it will be useful, but
|
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PySncosmo(Package):
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"""SNCosmo is a Python library for high-level supernova cosmology
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analysis."""
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homepage = "http://sncosmo.readthedocs.io/"
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url = "https://pypi.python.org/packages/source/s/sncosmo/sncosmo-1.2.0.tar.gz"
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version('1.2.0', '028e6d1dc84ab1c17d2f3b6378b2cb1e')
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# Required dependencies
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# py-sncosmo binaries are duplicates of those from py-astropy
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extends('python', ignore=r'bin/.*')
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depends_on('py-numpy')
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depends_on('py-scipy')
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depends_on('py-astropy')
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# Recommended dependencies
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depends_on('py-matplotlib')
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depends_on('py-iminuit')
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depends_on('py-emcee')
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depends_on('py-nestle')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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43
var/spack/repos/builtin/packages/py-wcsaxes/package.py
Normal file
43
var/spack/repos/builtin/packages/py-wcsaxes/package.py
Normal file
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@ -0,0 +1,43 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
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||||
|
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|
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class PyWcsaxes(Package):
|
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"""WCSAxes is a framework for making plots of Astronomical data
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in Matplotlib."""
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||||
|
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homepage = "http://wcsaxes.readthedocs.io/en/latest/index.html"
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||||
url = "https://github.com/astrofrog/wcsaxes/archive/v0.8.tar.gz"
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||||
|
||||
version('0.8', 'de1c60fdae4c330bf5ddb9f1ab5ab920')
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||||
extends('python', ignore=r'bin/pbr')
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||||
depends_on('py-numpy')
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||||
depends_on('py-matplotlib')
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||||
depends_on('py-astropy')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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||||
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@ -22,9 +22,6 @@
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# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
import functools
|
||||
import glob
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||||
import inspect
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||||
import os
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||||
import re
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||||
from contextlib import closing
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||||
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@ -37,11 +34,10 @@
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|||
|
||||
class Python(Package):
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||||
"""The Python programming language."""
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||||
|
||||
homepage = "http://www.python.org"
|
||||
url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tgz"
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||||
|
||||
extendable = True
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||||
|
||||
version('3.5.1', 'be78e48cdfc1a7ad90efff146dce6cfe')
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||||
version('3.5.0', 'a56c0c0b45d75a0ec9c6dee933c41c36')
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||||
version('2.7.11', '6b6076ec9e93f05dd63e47eb9c15728b', preferred=True)
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|
@ -49,6 +45,8 @@ class Python(Package):
|
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version('2.7.9', '5eebcaa0030dc4061156d3429657fb83')
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||||
version('2.7.8', 'd4bca0159acb0b44a781292b5231936f')
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||||
|
||||
extendable = True
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||||
depends_on("openssl")
|
||||
depends_on("bzip2")
|
||||
depends_on("readline")
|
||||
|
|
@ -64,39 +62,63 @@ def install(self, spec, prefix):
|
|||
# Rest of install is pretty standard except setup.py needs to
|
||||
# be able to read the CPPFLAGS and LDFLAGS as it scans for the
|
||||
# library and headers to build
|
||||
configure_args= [
|
||||
"--prefix=%s" % prefix,
|
||||
cppflags = ' -I'.join([
|
||||
spec['openssl'].prefix.include, spec['bzip2'].prefix.include,
|
||||
spec['readline'].prefix.include, spec['ncurses'].prefix.include,
|
||||
spec['sqlite'].prefix.include, spec['zlib'].prefix.include
|
||||
])
|
||||
|
||||
ldflags = ' -L'.join([
|
||||
spec['openssl'].prefix.lib, spec['bzip2'].prefix.lib,
|
||||
spec['readline'].prefix.lib, spec['ncurses'].prefix.lib,
|
||||
spec['sqlite'].prefix.lib, spec['zlib'].prefix.lib
|
||||
])
|
||||
|
||||
config_args = [
|
||||
"--prefix={0}".format(prefix),
|
||||
"--with-threads",
|
||||
"--enable-shared",
|
||||
"CPPFLAGS=-I%s/include -I%s/include -I%s/include -I%s/include -I%s/include -I%s/include" % (
|
||||
spec['openssl'].prefix, spec['bzip2'].prefix,
|
||||
spec['readline'].prefix, spec['ncurses'].prefix,
|
||||
spec['sqlite'].prefix, spec['zlib'].prefix),
|
||||
"LDFLAGS=-L%s/lib -L%s/lib -L%s/lib -L%s/lib -L%s/lib -L%s/lib" % (
|
||||
spec['openssl'].prefix, spec['bzip2'].prefix,
|
||||
spec['readline'].prefix, spec['ncurses'].prefix,
|
||||
spec['sqlite'].prefix, spec['zlib'].prefix)
|
||||
"CPPFLAGS=-I{0}".format(cppflags),
|
||||
"LDFLAGS=-L{0}".format(ldflags)
|
||||
]
|
||||
|
||||
if spec.satisfies('@3:'):
|
||||
configure_args.append('--without-ensurepip')
|
||||
configure(*configure_args)
|
||||
config_args.append('--without-ensurepip')
|
||||
|
||||
configure(*config_args)
|
||||
|
||||
make()
|
||||
make("install")
|
||||
|
||||
# Modify compiler paths in configuration files. This is necessary for
|
||||
# building site packages outside of spack
|
||||
filter_file(r'([/s]=?)([\S=]*)/lib/spack/env(/[^\s/]*)?/(\S*)(\s)',
|
||||
(r'\4\5'),
|
||||
join_path(prefix.lib, 'python%d.%d' % self.version[:2], '_sysconfigdata.py'))
|
||||
self.filter_compilers(spec, prefix)
|
||||
|
||||
python3_version = ''
|
||||
def filter_compilers(self, spec, prefix):
|
||||
"""Run after install to tell the configuration files and Makefiles
|
||||
to use the compilers that Spack built the package with.
|
||||
|
||||
If this isn't done, they'll have CC and CXX set to Spack's generic
|
||||
cc and c++. We want them to be bound to whatever compiler
|
||||
they were built with."""
|
||||
|
||||
kwargs = {'ignore_absent': True, 'backup': False, 'string': True}
|
||||
|
||||
dirname = join_path(prefix.lib,
|
||||
'python{0}'.format(self.version.up_to(2)))
|
||||
|
||||
config = 'config'
|
||||
if spec.satisfies('@3:'):
|
||||
python3_version = '-%d.%dm' % self.version[:2]
|
||||
makefile_filepath = join_path(prefix.lib, 'python%d.%d' % self.version[:2], 'config%s' % python3_version, 'Makefile')
|
||||
filter_file(r'([/s]=?)([\S=]*)/lib/spack/env(/[^\s/]*)?/(\S*)(\s)',
|
||||
(r'\4\5'),
|
||||
makefile_filepath)
|
||||
config = 'config-{0}m'.format(self.version.up_to(2))
|
||||
|
||||
files = [
|
||||
'_sysconfigdata.py',
|
||||
join_path(config, 'Makefile')
|
||||
]
|
||||
|
||||
for filename in files:
|
||||
filter_file(env['CC'], self.compiler.cc,
|
||||
join_path(dirname, filename), **kwargs)
|
||||
filter_file(env['CXX'], self.compiler.cxx,
|
||||
join_path(dirname, filename), **kwargs)
|
||||
|
||||
# ========================================================================
|
||||
# Set up environment to make install easy for python extensions.
|
||||
|
|
@ -104,57 +126,59 @@ def install(self, spec, prefix):
|
|||
|
||||
@property
|
||||
def python_lib_dir(self):
|
||||
return os.path.join('lib', 'python%d.%d' % self.version[:2])
|
||||
|
||||
return join_path('lib', 'python{0}'.format(self.version.up_to(2)))
|
||||
|
||||
@property
|
||||
def python_include_dir(self):
|
||||
return os.path.join('include', 'python%d.%d' % self.version[:2])
|
||||
|
||||
return join_path('include', 'python{0}'.format(self.version.up_to(2)))
|
||||
|
||||
@property
|
||||
def site_packages_dir(self):
|
||||
return os.path.join(self.python_lib_dir, 'site-packages')
|
||||
|
||||
return join_path(self.python_lib_dir, 'site-packages')
|
||||
|
||||
def setup_dependent_environment(self, spack_env, run_env, extension_spec):
|
||||
# TODO: do this only for actual extensions.
|
||||
"""Set PYTHONPATH to include site-packages dir for the
|
||||
extension and any other python extensions it depends on."""
|
||||
|
||||
# Set PYTHONPATH to include site-packages dir for the
|
||||
# extension and any other python extensions it depends on.
|
||||
python_paths = []
|
||||
for d in extension_spec.traverse():
|
||||
if d.package.extends(self.spec):
|
||||
python_paths.append(os.path.join(d.prefix, self.site_packages_dir))
|
||||
python_paths.append(join_path(d.prefix,
|
||||
self.site_packages_dir))
|
||||
|
||||
pythonpath = ':'.join(python_paths)
|
||||
spack_env.set('PYTHONPATH', pythonpath)
|
||||
|
||||
# For run time environment set only the path for extension_spec and prepend it to PYTHONPATH
|
||||
# For run time environment set only the path for
|
||||
# extension_spec and prepend it to PYTHONPATH
|
||||
if extension_spec.package.extends(self.spec):
|
||||
run_env.prepend_path('PYTHONPATH', os.path.join(extension_spec.prefix, self.site_packages_dir))
|
||||
|
||||
run_env.prepend_path('PYTHONPATH', join_path(
|
||||
extension_spec.prefix, self.site_packages_dir))
|
||||
|
||||
def setup_dependent_package(self, module, ext_spec):
|
||||
"""
|
||||
Called before python modules' install() methods.
|
||||
"""Called before python modules' install() methods.
|
||||
|
||||
In most cases, extensions will only need to have one line::
|
||||
|
||||
python('setup.py', 'install', '--prefix=%s' % prefix)
|
||||
"""
|
||||
python('setup.py', 'install', '--prefix={0}'.format(prefix))"""
|
||||
|
||||
# Python extension builds can have a global python executable function
|
||||
if self.version >= Version("3.0.0") and self.version < Version("4.0.0"):
|
||||
module.python = Executable(join_path(self.spec.prefix.bin, 'python3'))
|
||||
if Version("3.0.0") <= self.version < Version("4.0.0"):
|
||||
module.python = Executable(join_path(self.spec.prefix.bin,
|
||||
'python3'))
|
||||
else:
|
||||
module.python = Executable(join_path(self.spec.prefix.bin, 'python'))
|
||||
module.python = Executable(join_path(self.spec.prefix.bin,
|
||||
'python'))
|
||||
|
||||
# Add variables for lib/pythonX.Y and lib/pythonX.Y/site-packages dirs.
|
||||
module.python_lib_dir = os.path.join(ext_spec.prefix, self.python_lib_dir)
|
||||
module.python_include_dir = os.path.join(ext_spec.prefix, self.python_include_dir)
|
||||
module.site_packages_dir = os.path.join(ext_spec.prefix, self.site_packages_dir)
|
||||
module.python_lib_dir = join_path(ext_spec.prefix,
|
||||
self.python_lib_dir)
|
||||
module.python_include_dir = join_path(ext_spec.prefix,
|
||||
self.python_include_dir)
|
||||
module.site_packages_dir = join_path(ext_spec.prefix,
|
||||
self.site_packages_dir)
|
||||
|
||||
# Make the site packages directory for extensions, if it does not exist already.
|
||||
# Make the site packages directory for extensions
|
||||
if ext_spec.package.is_extension:
|
||||
mkdirp(module.site_packages_dir)
|
||||
|
||||
|
|
@ -167,25 +191,28 @@ def python_ignore(self, ext_pkg, args):
|
|||
ignore_arg = args.get('ignore', lambda f: False)
|
||||
|
||||
# Always ignore easy-install.pth, as it needs to be merged.
|
||||
patterns = [r'easy-install\.pth$']
|
||||
patterns = [r'site-packages/easy-install\.pth$']
|
||||
|
||||
# Ignore pieces of setuptools installed by other packages.
|
||||
# Must include directory name or it will remove all site*.py files.
|
||||
if ext_pkg.name != 'py-setuptools':
|
||||
patterns.append(r'/site[^/]*\.pyc?$')
|
||||
patterns.append(r'setuptools\.pth')
|
||||
patterns.append(r'bin/easy_install[^/]*$')
|
||||
patterns.append(r'setuptools.*egg$')
|
||||
patterns.extend([
|
||||
r'bin/easy_install[^/]*$',
|
||||
r'site-packages/setuptools[^/]*\.egg$',
|
||||
r'site-packages/setuptools\.pth$',
|
||||
r'site-packages/site[^/]*\.pyc?$',
|
||||
r'site-packages/__pycache__/site[^/]*\.pyc?$'
|
||||
])
|
||||
if ext_pkg.name != 'py-numpy':
|
||||
patterns.append(r'bin/f2py$')
|
||||
|
||||
return match_predicate(ignore_arg, patterns)
|
||||
|
||||
|
||||
def write_easy_install_pth(self, exts):
|
||||
paths = []
|
||||
for ext in sorted(exts.values()):
|
||||
ext_site_packages = os.path.join(ext.prefix, self.site_packages_dir)
|
||||
easy_pth = "%s/easy-install.pth" % ext_site_packages
|
||||
ext_site_packages = join_path(ext.prefix, self.site_packages_dir)
|
||||
easy_pth = join_path(ext_site_packages, "easy-install.pth")
|
||||
|
||||
if not os.path.isfile(easy_pth):
|
||||
continue
|
||||
|
|
@ -195,15 +222,18 @@ def write_easy_install_pth(self, exts):
|
|||
line = line.rstrip()
|
||||
|
||||
# Skip lines matching these criteria
|
||||
if not line: continue
|
||||
if re.search(r'^(import|#)', line): continue
|
||||
if (ext.name != 'py-setuptools' and
|
||||
re.search(r'setuptools.*egg$', line)): continue
|
||||
if not line:
|
||||
continue
|
||||
if re.search(r'^(import|#)', line):
|
||||
continue
|
||||
if ((ext.name != 'py-setuptools' and
|
||||
re.search(r'setuptools.*egg$', line))):
|
||||
continue
|
||||
|
||||
paths.append(line)
|
||||
|
||||
site_packages = os.path.join(self.prefix, self.site_packages_dir)
|
||||
main_pth = "%s/easy-install.pth" % site_packages
|
||||
site_packages = join_path(self.prefix, self.site_packages_dir)
|
||||
main_pth = join_path(site_packages, "easy-install.pth")
|
||||
|
||||
if not paths:
|
||||
if os.path.isfile(main_pth):
|
||||
|
|
@ -211,12 +241,19 @@ def write_easy_install_pth(self, exts):
|
|||
|
||||
else:
|
||||
with closing(open(main_pth, 'w')) as f:
|
||||
f.write("import sys; sys.__plen = len(sys.path)\n")
|
||||
f.write("""
|
||||
import sys
|
||||
sys.__plen = len(sys.path)
|
||||
""")
|
||||
for path in paths:
|
||||
f.write("%s\n" % path)
|
||||
f.write("import sys; new=sys.path[sys.__plen:]; del sys.path[sys.__plen:]; "
|
||||
"p=getattr(sys,'__egginsert',0); sys.path[p:p]=new; sys.__egginsert = p+len(new)\n")
|
||||
|
||||
f.write("{0}\n".format(path))
|
||||
f.write("""
|
||||
new = sys.path[sys.__plen:]
|
||||
del sys.path[sys.__plen:]
|
||||
p = getattr(sys, '__egginsert', 0)
|
||||
sys.path[p:p] = new
|
||||
sys.__egginsert = p + len(new)
|
||||
""")
|
||||
|
||||
def activate(self, ext_pkg, **args):
|
||||
ignore = self.python_ignore(ext_pkg, args)
|
||||
|
|
@ -228,12 +265,12 @@ def activate(self, ext_pkg, **args):
|
|||
exts[ext_pkg.name] = ext_pkg.spec
|
||||
self.write_easy_install_pth(exts)
|
||||
|
||||
|
||||
def deactivate(self, ext_pkg, **args):
|
||||
args.update(ignore=self.python_ignore(ext_pkg, args))
|
||||
super(Python, self).deactivate(ext_pkg, **args)
|
||||
|
||||
exts = spack.install_layout.extension_map(self.spec)
|
||||
if ext_pkg.name in exts: # Make deactivate idempotent.
|
||||
# Make deactivate idempotent
|
||||
if ext_pkg.name in exts:
|
||||
del exts[ext_pkg.name]
|
||||
self.write_easy_install_pth(exts)
|
||||
|
|
|
|||
Loading…
Reference in a new issue