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added meme package (#4257)

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* added albacore package as well as dependency py-ont-fast5-api

* added py-cutadapt and dependency py-xopen

* made more changes to albacore and cutadapt as well as dependencies

* made changes again per @adamjstewart

* fixed by python n00b errors i think

* fixed?

* tw=79

* made changes to py-ont-fast5-api ont-albacore

* removed bad characters

* albacore requires setuptools as build and run dependency

* added vmd

* added back albacore

* removed vmd package

* added meme software

* libz is only needed as link depedency for meme

* added libxml2 libxslt libgcrypt as link dependencies
This commit is contained in:
Douglas Duckworth 2017-05-16 10:42:37 -04:00 committed by Adam J. Stewart
parent fbc9d5a634
commit 9a4b86cd49
1 changed files with 43 additions and 0 deletions
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var/spack/repos/builtin/packages/meme/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Meme(AutotoolsPackage):
"""The MEME Suite allows the biologist to discover novel motifs in
collections of unaligned nucleotide or protein sequences, and to perform a
wide variety of other motif-based analyses."""
homepage = "http://meme-suite.org"
url = "http://meme-suite.org/meme-software/4.11.4/meme_4.11.4.tar.gz"
version('4.11.4', '371f513f82fa0888205748e333003897')
depends_on('zlib', type=('link'))
depends_on('libxml2', type=('link'))
depends_on('libxslt', type=('link'))
depends_on('libgcrypt', type=('link'))
depends_on('perl', type=('build', 'run'))
depends_on('python@2.7:', type=('build', 'run'))