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Julia: build without vendored dependencies (#27280)

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* Julia unvendored

* restrict LBT
This commit is contained in:
Harmen Stoppels 2022-01-20 17:07:04 +01:00 committed by GitHub
parent 1a5add3021
commit 9a23fbbcf0
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
6 changed files with 303 additions and 257 deletions
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11
var/spack/repos/builtin/packages/julia/gc.patch
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@ -1,11 +0,0 @@
--- julia/src/gc.c
+++ julia/src/gc.c
@@ -162,7 +162,7 @@
// A region is contiguous storage for up to REGION_PG_COUNT naturally aligned GC_PAGE_SZ pages
// It uses a very naive allocator (see malloc_page & free_page)
#if defined(_P64) && !defined(_COMPILER_MICROSOFT_)
-#define REGION_PG_COUNT 16*8*4096 // 8G because virtual memory is cheap
+#define REGION_PG_COUNT 8*4096 // 512M
#else
#define REGION_PG_COUNT 8*4096 // 512M
#endif

74
var/spack/repos/builtin/packages/julia/julia-1.6-system-libwhich-and-p7zip-symlink.patch Normal file
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@ -0,0 +1,74 @@
diff --git a/Make.inc b/Make.inc
index 4719a3d49b..b056dc6c73 100644
--- a/Make.inc
+++ b/Make.inc
@@ -54,6 +54,7 @@ USE_SYSTEM_NGHTTP2:=0
USE_SYSTEM_CURL:=0
USE_SYSTEM_LIBGIT2:=0
USE_SYSTEM_PATCHELF:=0
+USE_SYSTEM_LIBWHICH:=0
USE_SYSTEM_ZLIB:=0
USE_SYSTEM_P7ZIP:=0
@@ -1085,6 +1086,12 @@ else
PATCHELF := $(build_depsbindir)/patchelf
endif
+ifeq ($(USE_SYSTEM_LIBWHICH), 1)
+LIBWHICH := libwhich
+else
+LIBWHICH := $(build_depsbindir)/libwhich
+endif
+
# On aarch64 and powerpc64le, we assume the page size is 64K. Our binutils linkers
# and such already assume this, but `patchelf` seems to be behind the times. We
# explicitly tell it to use this large page size so that when we rewrite rpaths and
diff --git a/base/Makefile b/base/Makefile
index 2bef6aab7f..9e8c1abac7 100644
--- a/base/Makefile
+++ b/base/Makefile
@@ -170,7 +170,7 @@ endif
define symlink_system_library
libname_$2 := $$(notdir $(call versioned_libname,$2,$3))
-libpath_$2 := $$(shell $$(call spawn,$$(build_depsbindir)/libwhich) -p $$(libname_$2) 2>/dev/null)
+libpath_$2 := $$(shell $$(call spawn,$$(LIBWHICH)) -p $$(libname_$2) 2>/dev/null)
symlink_$2: $$(build_private_libdir)/$$(libname_$2)
$$(build_private_libdir)/$$(libname_$2):
@if [ -e "$$(libpath_$2)" ]; then \
@@ -191,6 +191,19 @@ SYMLINK_SYSTEM_LIBRARIES += symlink_$2
endif
endef
+# libexec executables
+symlink_p7zip: $(build_bindir)/7z$(EXE)
+
+ifneq ($(USE_SYSTEM_P7ZIP),0)
+SYMLINK_SYSTEM_LIBRARIES += symlink_p7zip
+7Z_PATH := $(shell which 7z$(EXE))
+endif
+
+$(build_bindir)/7z$(EXE):
+ [ -e "$(7Z_PATH)" ] && \
+ ([ ! -e "$@" ] || rm "$@") && \
+ ln -svf "$(7Z_PATH)" "$@"
+
# the following excludes: libuv.a, libutf8proc.a
ifneq ($(USE_SYSTEM_LIBM),0)
diff --git a/deps/Makefile b/deps/Makefile
index 3d3f795131..50ca806307 100644
--- a/deps/Makefile
+++ b/deps/Makefile
@@ -159,9 +159,11 @@ DEP_LIBS += lapack
endif
endif
+ifeq ($(USE_SYSTEM_LIBWHICH), 0)
ifneq ($(OS), WINNT)
DEP_LIBS += libwhich
endif
+endif
# unlist targets that have not been converted to use the staged-install
DEP_LIBS_STAGED := $(filter-out suitesparse-wrapper,$(DEP_LIBS))

18
var/spack/repos/builtin/packages/julia/llvm7-symver-jlprefix.patch Normal file
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@ -0,0 +1,18 @@
From f23277bb91a4925ba8763337137a3123a7600557 Mon Sep 17 00:00:00 2001
From: Valentin Churavy <v.churavy@gmail.com>
Date: Tue, 16 Jan 2018 17:29:05 -0500
Subject: [PATCH] add JL prefix to all LLVM version suffixes
---
tools/llvm-shlib/simple_version_script.map.in | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/llvm/tools/llvm-shlib/simple_version_script.map.in b/llvm/tools/llvm-shlib/simple_version_script.map.in
index e9515fe7862..af082581627 100644
--- a/llvm/tools/llvm-shlib/simple_version_script.map.in
+++ b/llvm/tools/llvm-shlib/simple_version_script.map.in
@@ -1 +1 @@
-LLVM_@LLVM_VERSION_MAJOR@ { global: *; };
+JL_LLVM_@LLVM_VERSION_MAJOR@.@LLVM_VERSION_MINOR@ { global: *; };
--
2.15.1

68
var/spack/repos/builtin/packages/julia/openblas.patch
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@ -1,68 +0,0 @@
diff --git a/deps/Makefile b/deps/Makefile
index 6cb73be..bcd8520 100644
--- a/deps/Makefile
+++ b/deps/Makefile
@@ -1049,7 +1049,7 @@ OPENBLAS_BUILD_OPTS += NO_AFFINITY=1
# Build for all architectures - required for distribution
ifeq ($(OPENBLAS_DYNAMIC_ARCH), 1)
-OPENBLAS_BUILD_OPTS += DYNAMIC_ARCH=1
+OPENBLAS_BUILD_OPTS += DYNAMIC_ARCH=1 MAKE_NO_J=1
endif
# 64-bit BLAS interface
@@ -1085,6 +1085,7 @@ OPENBLAS_BUILD_OPTS += NO_AVX2=1
endif
$(OPENBLAS_SRC_DIR)/config.status: $(OPENBLAS_SRC_DIR)/Makefile
+ cd $(dir $@) && patch -p1 < ../openblas-make.patch
ifeq ($(OS),WINNT)
cd $(dir $@) && patch -p1 < ../openblas-win64.patch
endif
diff --git a/deps/openblas.version b/deps/openblas.version
index 7c97e1b..58b9467 100644
--- a/deps/openblas.version
+++ b/deps/openblas.version
@@ -1,2 +1,2 @@
-OPENBLAS_BRANCH=v0.2.15
-OPENBLAS_SHA1=53e849f4fcae4363a64576de00e982722c7304f9
+OPENBLAS_BRANCH=v0.2.17
+OPENBLAS_SHA1=a71e8c82f6a9f73093b631e5deab1e8da716b61f
--- a/deps/openblas-make.patch
+++ b/deps/openblas-make.patch
@@ -0,0 +1,35 @@
+diff --git a/Makefile.system b/Makefile.system
+index b89f60e..2dbdad0 100644
+--- a/Makefile.system
++++ b/Makefile.system
+@@ -139,6 +139,10 @@ NO_PARALLEL_MAKE=0
+ endif
+ GETARCH_FLAGS += -DNO_PARALLEL_MAKE=$(NO_PARALLEL_MAKE)
+
++ifdef MAKE_NO_J
++GETARCH_FLAGS += -DMAKE_NO_J=$(MAKE_NO_J)
++endif
++
+ ifdef MAKE_NB_JOBS
+ GETARCH_FLAGS += -DMAKE_NB_JOBS=$(MAKE_NB_JOBS)
+ endif
+diff --git a/getarch.c b/getarch.c
+index f9c49e6..dffad70 100644
+--- a/getarch.c
++++ b/getarch.c
+@@ -1012,6 +1012,7 @@ int main(int argc, char *argv[]){
+ #endif
+ #endif
+
++#ifndef MAKE_NO_J
+ #ifdef MAKE_NB_JOBS
+ printf("MAKE += -j %d\n", MAKE_NB_JOBS);
+ #elif NO_PARALLEL_MAKE==1
+@@ -1021,6 +1022,7 @@ int main(int argc, char *argv[]){
+ printf("MAKE += -j %d\n", get_num_cores());
+ #endif
+ #endif
++#endif
+
+ break;
+

355
var/spack/repos/builtin/packages/julia/package.py
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@ -3,213 +3,212 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os
from spack import *
from spack.version import ver
class Julia(Package):
def get_best_target(microarch, compiler_name, compiler_version):
for compiler_entry in microarch.compilers[compiler_name]:
if compiler_version.satisfies(ver(compiler_entry["versions"])):
return compiler_entry.get("name", microarch.name)
raise InstallError("Could not find a target architecture")
class Julia(MakefilePackage):
"""The Julia Language: A fresh approach to technical computing"""
homepage = "https://julialang.org"
url = "https://github.com/JuliaLang/julia/releases/download/v0.4.3/julia-0.4.3-full.tar.gz"
url = "https://github.com/JuliaLang/julia/releases/download/v1.7.0/julia-1.7.0.tar.gz"
git = "https://github.com/JuliaLang/julia.git"
maintainers = ['glennpj', 'vchuravy']
maintainers = ['glennpj', 'vchuravy', 'haampie']
version('master', branch='master')
version('1.7.0', sha256='d40d83944f8e1709de1d6f7544e1a6721e091f70ba06b44c25b89bdba754dfa6', preferred=True)
version('1.6.4', sha256='954578b973fdb891c88fa1eedd931129e215ab928ecc416dd0bdf6c70549d2fc')
version('1.6.3', sha256='29aad934582fb4c6dd9f9dd558ad649921f43bc7320eab54407fdf6dd3270a33')
version('1.6.2', sha256='01241120515cb9435b96179cf301fbd2c24d4405f252588108d13ceac0f41c0a')
version('1.6.1', sha256='71d8e40611361370654e8934c407b2dec04944cf3917c5ecb6482d6b85ed767f')
version('1.6.0', sha256='1b05f42c9368bc2349c47363b7ddc175a2da3cd162d52b6e24c4f5d4d6e1232c')
version('1.5.4', sha256='dbfb8cd544b223eff70f538da7bb9d5b6f76fd0b00dd2385e6254e74ad4e892f')
version('1.5.3', sha256='fb69337ca037576758547c7eed9ae8f153a9c052318327b6b7f1917408c14d91')
version('1.5.2', sha256='850aed3fe39057488ec633f29af705f5ada87e3058fd65e48ad26f91b713a19a')
version('1.5.1', sha256='1d0debfccfc7cd07047aa862dd2b1a96f7438932da1f5feff6c1033a63f9b1d4')
version('1.5.0', sha256='4a6ffadc8dd04ca0b7fdef6ae203d0af38185e57b78f7c0b972c4707354a6d1b')
version('1.4.2', sha256='948c70801d5cce81eeb7f764b51b4bfbb2dc0b1b9effc2cb9fc8f8cf6c90a334')
version('1.4.1', sha256='b21585db55673ac0668c163678fcf2aad11eb7c64bb2aa03a43046115fab1553')
version('1.4.0', sha256='880c73a08296ce8d94ad9605149f2a2b2b028e7202a700ef725da899300b8be9')
version('1.3.1', sha256='053908ec2706eb76cfdc998c077de123ecb1c60c945b4b5057aa3be19147b723')
version('1.2.0', sha256='2419b268fc5c3666dd9aeb554815fe7cf9e0e7265bc9b94a43957c31a68d9184')
version('1.1.1', sha256='3c5395dd3419ebb82d57bcc49dc729df3b225b9094e74376f8c649ee35ed79c2', deprecated=True)
version('1.0.0', sha256='1a2497977b1d43bb821a5b7475b4054b29938baae8170881c6b8dd4099d133f1', deprecated=True)
version('0.6.2', sha256='1e34c13091c9ddb47cf87a51566d94a06613f3db3c483b8f63b276e416dd621b', deprecated=True)
version('0.5.2', sha256='f5ef56d79ed55eacba9fe968bb175317be3f61668ef93e747d76607678cc01dd', deprecated=True)
version('0.5.1', sha256='533b6427a1b01bd38ea0601f58a32d15bf403f491b8415e9ce4305b8bc83bb21', deprecated=True)
version('0.5.0', sha256='732478536b6dccecbf56e541eef0aed04de0e6d63ae631b136e033dda2e418a9', deprecated=True)
version('0.4.7', sha256='d658d5bd5fb79b19f3c01cadb9aba8622ca8a12a4b687acc7d99c21413623570', deprecated=True)
version('0.4.6', sha256='4c23c9fc72398014bd39327c2f7efd3a301884567d4cb2a89105c984d4d633ba', deprecated=True)
version('0.4.5', sha256='cbf361c23a77e7647040e8070371691083e92aa93c8a318afcc495ad1c3a71d9', deprecated=True)
version('0.4.3', sha256='2b9df25a8f58df8e43038ec30bae195dfb160abdf925f3fa193b59d40e4113c5', deprecated=True)
version('1.7.1', sha256='17d298e50e4e3dd897246ccebd9f40ce5b89077fa36217860efaec4576aa718e')
version('1.7.0', sha256='8e870dbef71bc72469933317a1a18214fd1b4b12f1080784af7b2c56177efcb4')
version('1.6.5', sha256='b70ae299ff6b63a9e9cbf697147a48a31b4639476d1947cb52e4201e444f23cb')
version('1.6.4', sha256='a4aa921030250f58015201e28204bff604a007defc5a379a608723e6bb1808d4')
variant('cxx', default=False, description='Prepare for Julia Cxx package')
variant('mkl', default=False, description='Use Intel MKL')
# We've deprecated these versions, so that we can remove them in Spack 0.18
# They are still available in Spack 0.17. Julia 0.17.0 is the first version that
# can be built enitrely from Spack packages, without a network connection during
# the build.
for v in [
'1.6.3', '1.6.2', '1.6.1', '1.6.0', '1.5.4', '1.5.3', '1.5.2', '1.5.1', '1.5.0',
'1.4.2', '1.4.1', '1.4.0', '1.3.1', '1.2.0', '1.1.1', '1.0.0', '0.6.2', '0.5.2',
'0.5.1', '0.5.0', '0.4.7', '0.4.6', '0.4.5', '0.4.3'
]:
version(v, deprecated=True)
patch('gc.patch', when='@0.4:0.4.5')
patch('openblas.patch', when='@0.4:0.4.5')
patch('armgcc.patch', when='@1.0.0:1.1.1 %gcc@:5.9 target=aarch64:')
variant('precompile', default=True, description='Improve julia startup time')
variant('openlibm', default=True, description='Use openlibm instead of libm')
# Build-time dependencies:
# depends_on('awk')
depends_on('m4', type='build')
# depends_on('pkgconfig')
# Python only needed to build LLVM?
depends_on('python@2.7:2.8', type='build', when='@:1.1')
depends_on('python@2.7:', type='build', when='@1.2:')
depends_on('cmake@2.8:', type='build', when='@1.0:')
depends_on('cmake@:3.11', type='build', when='@:1.4')
depends_on('git', type='build', when='@master')
# Note, we just use link_llvm_dylib so that we not only get a libLLVM,
# but also so that llvm-config --libfiles gives only the dylib. Without
# it it also gives static libraries, and breaks Julia's build.
depends_on('llvm version_suffix=jl +link_llvm_dylib ~internal_unwind')
depends_on('libuv')
# Combined build-time and run-time dependencies:
# (Yes, these are run-time dependencies used by Julia's package manager.)
depends_on('cmake @2.8:', type=('build', 'run'), when='@:0.6')
depends_on('curl', when='@:0.5.0')
depends_on('git', type=('build', 'run'), when='@:0.4')
depends_on('openssl@:1.0', when='@:0.5.0')
depends_on('mkl', when='+mkl')
with when('@1.7.0:1.7'):
# libssh2.so.1, libpcre2-8.so.0, mbedtls.so.13, mbedcrypto.so.5, mbedx509.so.1
# openlibm.so.3, (todo: complete this list for upperbounds...)
depends_on('llvm@12.0.1')
depends_on('libuv@1.42.0')
depends_on('mbedtls@2.24.0:2.24')
depends_on('openlibm@0.7.0:0.7', when='+openlibm')
depends_on('libblastrampoline@3.0.0:3')
# Run-time dependencies:
# depends_on('arpack')
# depends_on('fftw +float')
# depends_on('gmp')
# depends_on('libgit')
# depends_on('mpfr')
# depends_on('openblas')
# depends_on('pcre2')
with when('@1.6.0:1.6'):
# libssh2.so.1, libpcre2-8.so.0, mbedtls.so.13, mbedcrypto.so.5, mbedx509.so.1
# openlibm.so.3, (todo: complete this list for upperbounds...)
depends_on('llvm@11.0.1')
depends_on('libuv@1.39.0')
depends_on('mbedtls@2.24.0:2.24')
depends_on('openlibm@0.7.0:0.7', when='+openlibm')
# ARPACK: Requires BLAS and LAPACK; needs to use the same version
# as Julia.
# Patches for llvm
depends_on('llvm', patches='llvm7-symver-jlprefix.patch')
depends_on('llvm', when='^llvm@11.0.1', patches=patch(
'https://raw.githubusercontent.com/spack/patches/0b543955683a903d711a3e95ff29a4ce3951ca13/julia/llvm-11.0.1-julia-1.6.patch',
sha256='8866ee0595272b826b72d173301a2e625855e80680a84af837f1ed6db4657f42'))
depends_on('llvm', when='^llvm@12.0.1', patches=patch(
'https://github.com/JuliaLang/llvm-project/compare/fed41342a82f5a3a9201819a82bf7a48313e296b...980d2f60a8524c5546397db9e8bbb7d6ea56c1b7.patch',
sha256='10cb42f80c2eaad3e9c87cb818b6676f1be26737bdf972c77392d71707386aa4'))
depends_on('llvm', when='^llvm@13.0.0', patches=patch(
'https://github.com/JuliaLang/llvm-project/compare/d7b669b3a30345cfcdb2fde2af6f48aa4b94845d...6ced34d2b63487a88184c3c468ceda166d10abba.patch',
sha256='92f022176ab85ded517a9b7aa04df47e19a5def88f291e0c31100128823166c1'))
# BLAS and LAPACK: Julia prefers 64-bit versions on 64-bit
# systems. OpenBLAS has an option for this; make it available as
# variant.
# Patches for libuv
depends_on('libuv', when='^libuv@1.39.0', patches=patch(
'https://raw.githubusercontent.com/spack/patches/b59ca193423c4c388254f528afabb906b5373162/julia/libuv-1.39.0.patch',
sha256='f7c1e7341e89dc35dfd85435ba35833beaef575b997c3f978c27d0dbf805149b'))
depends_on('libuv', when='^libuv@1.42.0', patches=patch(
'https://raw.githubusercontent.com/spack/patches/89b6d14eb1f3c3d458a06f1e06f7dda3ab67bd38/julia/libuv-1.42.0.patch',
sha256='d9252fbe67ac8f15e15653f0f6b00dffa07ae1a42f013d4329d17d8b492b7cdb'))
# FFTW: Something doesn't work when using a pre-installed FFTW
# library; need to investigate.
# patchelf 0.13 is required because the rpath patch uses --add-rpath
depends_on('patchelf@0.13:', type='build')
depends_on('perl', type='build')
depends_on('libwhich', type='build')
# GMP, MPFR: Something doesn't work when using a pre-installed
# FFTW library; need to investigate.
depends_on('blas') # note: for now openblas is fixed...
depends_on('curl tls=mbedtls +nghttp2 +libssh2')
depends_on('dsfmt@2.2.4:') # apparently 2.2.3->2.2.4 breaks API
depends_on('gmp')
depends_on('lapack') # note: for now openblas is fixed...
depends_on('libblastrampoline', when='@1.7.0:')
depends_on('libgit2')
depends_on('libssh2 crypto=mbedtls')
depends_on('mbedtls libs=shared')
depends_on('mpfr')
depends_on('nghttp2')
depends_on('openblas +ilp64 symbol_suffix=64_')
depends_on('openlibm', when='+openlibm')
depends_on('p7zip')
depends_on('pcre2')
depends_on('suite-sparse +pic')
depends_on('unwind')
depends_on('utf8proc')
depends_on('zlib +shared +pic +optimize')
# LLVM: Julia works only with specific versions, and might require
# patches. Thus we let Julia install its own LLVM.
# Patches for julia
patch('julia-1.6-system-libwhich-and-p7zip-symlink.patch', when='@1.6.0:1.6')
patch('use-add-rpath.patch')
# Other possible dependencies:
# USE_SYSTEM_OPENLIBM=0
# USE_SYSTEM_OPENSPECFUN=0
# USE_SYSTEM_DSFMT=0
# USE_SYSTEM_SUITESPARSE=0
# USE_SYSTEM_UTF8PROC=0
# USE_SYSTEM_LIBGIT2=0
conflicts('+cxx', when='@:0.6', msg='Variant cxx requires Julia >= 1.0.0')
conflicts('@:0.7.0', when='target=aarch64:')
# GCC conflicts
conflicts('@:0.5.1', when='%gcc@8:', msg='Julia <= 0.5.1 needs GCC <= 7')
# Building recent versions of Julia with Intel is untested and unsupported
# by the Julia project, https://github.com/JuliaLang/julia/issues/23407.
conflicts('@0.6:', when='%intel',
msg='Only Julia <= 0.5.x can be built with the Intel compiler.')
conflicts('%intel', when='~mkl',
msg='Building with the Intel compiler requires the mkl variant '
'(+mkl)')
def patch(self):
# The system-libwhich-libblastrampoline.patch causes a rebuild of docs as it
# touches the main Makefile, so we reset the a/m-time to doc/_build's.
f = os.path.join("doc", "_build", "html", "en", "index.html")
if os.path.exists(f):
time = (os.path.getatime(f), os.path.getmtime(f))
os.utime(os.path.join("base", "Makefile"), time)
def setup_build_environment(self, env):
# The julia build can have trouble with finding GCC libraries with the
# spack compiler.
if self.compiler.name == 'gcc':
gcc_base = os.path.split(os.path.split(self.compiler.cc)[0])[0]
env.prepend_path('LD_LIBRARY_PATH', join_path(gcc_base, 'lib64'))
def install(self, spec, prefix):
# Julia needs git tags
if os.path.isfile('.git/shallow'):
git = which('git')
git('fetch', '--unshallow')
# Explicitly setting CC, CXX, or FC breaks building libuv, one
# of Julia's dependencies. This might be a Darwin-specific
# problem. Given how Spack sets up compilers, Julia should
# still use Spack's compilers, even if we don't specify them
# explicitly. Potential options are
# 'CC=cc',
# 'CXX=c++',
# 'FC=fc',
# 'USE_SYSTEM_ARPACK=1',
# 'override USE_SYSTEM_CURL=1',
# 'USE_SYSTEM_FFTW=1',
# 'USE_SYSTEM_GMP=1',
# 'USE_SYSTEM_MPFR=1',
# 'USE_SYSTEM_PCRE=1',
options = [
'prefix={0}'.format(prefix)
# this is a bit ridiculous, but we are setting runtime linker paths to
# dependencies so that libwhich can locate them.
if (
self.spec.satisfies('platform=linux') or
self.spec.satisfies('platform=cray')
):
linker_var = 'LD_LIBRARY_PATH'
elif self.spec.satisfies('platform=darwin'):
linker_var = 'DYLD_FALLBACK_LIBRARY_PATH'
else:
return
pkgs = [
'curl', 'dsfmt', 'gmp', 'libgit2', 'libssh2', 'libunwind', 'mbedtls',
'mpfr', 'nghttp2', 'openblas', 'openlibm', 'pcre2', 'suite-sparse',
'utf8proc', 'zlib'
]
if '@:0.5.0' in spec:
options += [
'override USE_SYSTEM_CURL=1'
]
if self.spec.satisfies('@1.7.0:'):
pkgs.append('libblastrampoline')
for pkg in pkgs:
for dir in self.spec[pkg].libs.directories:
env.prepend_path(linker_var, dir)
if '+cxx' in spec:
options += [
'BUILD_LLVM_CLANG=1',
'LLVM_ASSERTIONS=1',
'USE_LLVM_SHLIB=1'
]
if spec.target.family == 'aarch64':
options += [
'JULIA_CPU_TARGET=generic',
'MARCH=armv8-a+crc'
]
def edit(self, spec, prefix):
# TODO: use a search query for blas / lapack?
libblas = os.path.splitext(spec['blas'].libs.basenames[0])[0]
liblapack = os.path.splitext(spec['lapack'].libs.basenames[0])[0]
if spec.target.family == 'x86_64' or spec.target.family == 'x86':
if spec.target == 'x86_64':
options += [
'JULIA_CPU_TARGET=generic'
]
else:
target_str = str(spec.target).replace('_', '-')
if target_str == "zen":
target_str = "znver1"
if target_str == "zen2":
target_str = "znver2"
if target_str == "zen3":
if spec.satisfies('@1.7.0:'):
target_str = "znver3"
else:
# The LLVM in @1.6.4 doesn't support znver3.
target_str = "znver2"
options += [
'JULIA_CPU_TARGET={0}'.format(target_str)
]
# Host compiler target name
march = get_best_target(spec.target, spec.compiler.name, spec.compiler.version)
if '%intel' in spec:
options += [
'USEICC=1',
'USEIFC=1',
'USE_INTEL_LIBM=1'
]
# LLVM compatible name for the JIT
julia_cpu_target = get_best_target(spec.target, 'clang', spec['llvm'].version)
options = [
'prefix:={0}'.format(prefix),
'MARCH:={0}'.format(march),
'JULIA_CPU_TARGET:={0}'.format(julia_cpu_target),
'USE_BINARYBUILDER:=0',
'VERBOSE:=1',
# Spack managed dependencies
'USE_SYSTEM_BLAS:=1',
'USE_SYSTEM_CSL:=1',
'USE_SYSTEM_CURL:=1',
'USE_SYSTEM_DSFMT:=1',
'USE_SYSTEM_GMP:=1',
'USE_SYSTEM_LAPACK:=1',
'USE_SYSTEM_LIBBLASTRAMPOLINE:=1',
'USE_SYSTEM_LIBGIT2:=1',
'USE_SYSTEM_LIBSSH2:=1',
'USE_SYSTEM_LIBSUITESPARSE:=1', # @1.7:
'USE_SYSTEM_SUITESPARSE:=1', # @:1.6
'USE_SYSTEM_LIBUNWIND:=1',
'USE_SYSTEM_LIBUV:=1',
'USE_SYSTEM_LIBWHICH:=1',
'USE_SYSTEM_LLVM:=1',
'USE_SYSTEM_MBEDTLS:=1',
'USE_SYSTEM_MPFR:=1',
'USE_SYSTEM_P7ZIP:=1',
'USE_SYSTEM_PATCHELF:=1',
'USE_SYSTEM_PCRE:=1',
'USE_SYSTEM_UTF8PROC:=1',
'USE_SYSTEM_ZLIB:=1',
# todo: ilp depends on arch
'USE_BLAS64:=1',
'LIBBLASNAME:={0}'.format(libblas),
'LIBLAPACKNAME:={0}'.format(liblapack),
'override LIBUV:={0}'.format(spec['libuv'].libs.libraries[0]),
'override LIBUV_INC:={0}'.format(spec['libuv'].headers.directories[0]),
'override USE_LLVM_SHLIB:=1',
# make rebuilds a bit faster for now, not sure if this should be kept
'JULIA_PRECOMPILE:={0}'.format(
'1' if spec.variants['precompile'].value else '0'),
]
# libm or openlibm?
if spec.variants['openlibm'].value:
options.append('USE_SYSTEM_LIBM=0')
options.append('USE_SYSTEM_OPENLIBM=1')
else:
options.append('USE_SYSTEM_LIBM=1')
options.append('USE_SYSTEM_OPENLIBM=0')
if '+mkl' in spec:
options += [
'USE_INTEL_MKL=1',
]
with open('Make.user', 'w') as f:
f.write('\n'.join(options) + '\n')
make()
make('install')
# Julia's package manager needs a certificate
if '@:0.5.0' in spec:
cacert_dir = join_path(prefix, 'etc', 'curl')
mkdirp(cacert_dir)
cacert_file = join_path(cacert_dir, 'cacert.pem')
curl = which('curl')
curl('--create-dirs',
'--output', cacert_file,
'https://curl.haxx.se/ca/cacert.pem')

34
var/spack/repos/builtin/packages/julia/use-add-rpath.patch Normal file
View file

@ -0,0 +1,34 @@
diff --git a/Makefile b/Makefile
index 2fb9be55f9..76ffc5b738 100644
--- a/Makefile
+++ b/Makefile
@@ -343,7 +343,7 @@ ifneq ($(DARWIN_FRAMEWORK),1)
endif
else ifneq (,$(findstring $(OS),Linux FreeBSD))
for j in $(JL_TARGETS) ; do \
- $(PATCHELF) --set-rpath '$$ORIGIN/$(private_libdir_rel):$$ORIGIN/$(libdir_rel)' $(DESTDIR)$(bindir)/$$j; \
+ $(PATCHELF) --add-rpath '$$ORIGIN/$(private_libdir_rel):$$ORIGIN/$(libdir_rel)' $(DESTDIR)$(bindir)/$$j; \
done
endif
@@ -363,9 +363,9 @@ endif
# Set rpath for libjulia-internal, which is moving from `../lib` to `../lib/julia`. We only need to do this for Linux/FreeBSD
ifneq (,$(findstring $(OS),Linux FreeBSD))
- $(PATCHELF) --set-rpath '$$ORIGIN:$$ORIGIN/$(reverse_private_libdir_rel)' $(DESTDIR)$(private_libdir)/libjulia-internal.$(SHLIB_EXT)
+ $(PATCHELF) --add-rpath '$$ORIGIN:$$ORIGIN/$(reverse_private_libdir_rel)' $(DESTDIR)$(private_libdir)/libjulia-internal.$(SHLIB_EXT)
ifeq ($(BUNDLE_DEBUG_LIBS),1)
- $(PATCHELF) --set-rpath '$$ORIGIN:$$ORIGIN/$(reverse_private_libdir_rel)' $(DESTDIR)$(private_libdir)/libjulia-internal-debug.$(SHLIB_EXT)
+ $(PATCHELF) --add-rpath '$$ORIGIN:$$ORIGIN/$(reverse_private_libdir_rel)' $(DESTDIR)$(private_libdir)/libjulia-internal-debug.$(SHLIB_EXT)
endif
endif
@@ -389,7 +389,7 @@ ifeq ($(OS),FreeBSD)
# don't set libgfortran's RPATH, it won't be able to find its friends on systems
# that don't have the exact GCC port installed used for the build.
for lib in $(DESTDIR)$(private_libdir)/libgfortran*$(SHLIB_EXT)*; do \
- $(PATCHELF) --set-rpath '$$ORIGIN' $$lib; \
+ $(PATCHELF) --add-rpath '$$ORIGIN' $$lib; \
done
endif