Add a CI job to audit all the packages in the built-in repository (#27945)
* Add a CI job to audit all the packages in the built-in repository * flecsi: fixed typo for dependency on legion * py-pythonqwt: fix a typo in variant name * sollve: removed a conflict with a non-existing variant * acts: fixed use of wrong variant in dd4hep Also removed duplicated variant declaration in dd4hep * aoflagger: update variant of a dependency Issues introduced indirectly in #22925 * camellia: removed unused variant Issue introduced indirectly in #26150 * cbtf-*: remove cti variants and dependency on mrnet+cti Issue introduced in #14178 * flecsale: update variants to match flecsi Issue introduced in #11679 * grnboost: fixed issue with non-existing variant in a dependency This package possibly never worked since #8763 * nalu: fixed issue with non-existing variant in a dependency * open-iscsi: fixed issue with non-existing variant in a dependency * openspeedshop-*: remove use of non-existing mrnet+cti variant * percept: fixed issue with non-existing variant in a dependency * phyluce: fixed issue with non-existing variant in a dependency Issue introduced in #12952 * phyluce: fixed issue with non-existing variant in a dependency Issue introduced in #22340
This commit is contained in:
Massimiliano Culpo
GitHub
parent
28d31316b7
commit
948bc98fa6
21 changed files with 44 additions and 70 deletions
29
.github/workflows/unit_tests.yaml
vendored
29
.github/workflows/unit_tests.yaml
vendored
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@ -314,3 +314,32 @@ jobs:
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with:
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files: ./coverage.xml
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flags: unittests,macos
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# Run audits on all the packages in the built-in repository
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package-audits:
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needs: [ validate, style, changes ]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@ec3a7ce113134d7a93b817d10a8272cb61118579 # @v2
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- uses: actions/setup-python@dc73133d4da04e56a135ae2246682783cc7c7cb6 # @v2
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with:
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python-version: 3.9
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- name: Install Python packages
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run: |
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pip install --upgrade pip six setuptools pytest codecov coverage[toml]
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- name: Package audits (with coverage)
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if: ${{ needs.changes.outputs.with_coverage == 'true' }}
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run: |
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. share/spack/setup-env.sh
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coverage run $(which spack) audit packages
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coverage combine
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coverage xml
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- name: Package audits (wwithout coverage)
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if: ${{ needs.changes.outputs.with_coverage == 'false' }}
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run: |
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. share/spack/setup-env.sh
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$(which spack) audit packages
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- uses: codecov/codecov-action@f32b3a3741e1053eb607407145bc9619351dc93b # @v2.1.0
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if: ${{ needs.changes.outputs.with_coverage == 'true' }}
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with:
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flags: unittests,linux,audits
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@ -146,7 +146,7 @@ class Acts(CMakePackage, CudaPackage):
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depends_on('boost @1.71: +filesystem +program_options +test', when='@0.10.4:')
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depends_on('cmake @3.14:', type='build')
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depends_on('dd4hep @1.11:', when='+dd4hep')
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depends_on('dd4hep @1.11: +geant4', when='+dd4hep +geant4')
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depends_on('dd4hep @1.11: +ddg4', when='+dd4hep +geant4')
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depends_on('eigen @3.3.7:')
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depends_on('geant4', when='+fatras_geant4')
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depends_on('geant4', when='+geant4')
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@ -15,7 +15,7 @@ class Aoflagger(CMakePackage):
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version('2.10.0', sha256='3ec1188d37101acf2029575ebc09c50b19c158c88a12b55ac5d25a96bd8fc18d')
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depends_on('casacore+python+fftw@1.10:')
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depends_on('casacore+python~fftpack@1.10:')
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depends_on('fftw~mpi@3.0:')
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depends_on('boost+python@:1.66.99')
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depends_on('libxml2')
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@ -20,7 +20,7 @@ class Camellia(CMakePackage):
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variant('moab', default=True, description='Compile with MOAB to include support for reading standard mesh formats')
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depends_on('trilinos+amesos+amesos2+belos+epetra+epetraext+exodus+ifpack+ifpack2+intrepid+intrepid2+kokkos+ml+muelu+sacado+shards+tpetra+zoltan+mumps+superlu-dist+hdf5+zlib+mpi@master,12.12.1:')
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depends_on('trilinos+amesos+amesos2+belos+epetra+epetraext+exodus+ifpack+ifpack2+intrepid+intrepid2+kokkos+ml+muelu+sacado+shards+tpetra+zoltan+mumps+superlu-dist+hdf5+mpi@master,12.12.1:')
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depends_on('moab@:4', when='+moab')
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# Cameilla needs hdf5 but the description "hdf5@:1.8" is
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@ -18,8 +18,6 @@ class CbtfArgonavis(CMakePackage):
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version('1.9.4', branch='1.9.4')
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version('1.9.3', branch='1.9.3')
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variant('cti', default=False,
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description="Build MRNet with the CTI startup option")
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variant('crayfe', default=False,
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description="build only the FE tool using the runtime_dir \
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to point to target build.")
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@ -41,19 +39,13 @@ class CbtfArgonavis(CMakePackage):
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depends_on("boost@1.70.0:")
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# For MRNet
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depends_on("mrnet@5.0.1-3:+cti", when='@develop+cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop~cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3+cti", when='@1.9.3:9999+cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3+lwthreads", when='@1.9.3:9999~cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3+lwthreads", when='@1.9.3:9999', type=('build', 'link', 'run'))
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# For CBTF
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depends_on("cbtf@develop", when='@develop', type=('build', 'link', 'run'))
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depends_on("cbtf@1.9.3:9999", when='@1.9.3:9999', type=('build', 'link', 'run'))
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# For CBTF with cti
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depends_on("cbtf@develop+cti", when='@develop+cti', type=('build', 'link', 'run'))
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depends_on("cbtf@1.9.3:9999+cti", when='@1.9.3:9999+cti', type=('build', 'link', 'run'))
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# For CBTF with runtime
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depends_on("cbtf@develop+runtime", when='@develop+runtime', type=('build', 'link', 'run'))
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depends_on("cbtf@1.9.3:9999+runtime", when='@1.9.3:9999+runtime', type=('build', 'link', 'run'))
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@ -68,9 +60,6 @@ class CbtfArgonavis(CMakePackage):
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depends_on("cbtf-krell@develop", when='@develop', type=('build', 'link', 'run'))
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depends_on("cbtf-krell@1.9.3:9999", when='@1.9.3:9999', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@develop+cti', when='@develop+cti', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@1.9.3:9999+cti', when='@1.9.3:9999+cti', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@develop+runtime', when='@develop+runtime', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@1.9.3:9999+runtime', when='@1.9.3:9999+runtime', type=('build', 'link', 'run'))
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@ -40,8 +40,6 @@ class CbtfKrell(CMakePackage):
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variant('build_type', default='RelWithDebInfo',
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description='The build type to build',
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values=('Debug', 'Release', 'RelWithDebInfo'))
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variant('cti', default=False,
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description="Build MRNet with the CTI startup option")
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variant('crayfe', default=False,
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description="build only the FE tool using the runtime_dir \
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to point to target build.")
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@ -66,10 +64,7 @@ class CbtfKrell(CMakePackage):
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depends_on("dyninst@10.1.0", when='@1.9.3:9999')
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# For MRNet
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depends_on("mrnet@5.0.1-3:+cti", when='@develop+cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3+cti", when='@1.9.3:9999+cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3+lwthreads", when='@1.9.3:9999', type=('build', 'link', 'run'))
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# For Xerces-C
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@ -79,10 +74,6 @@ class CbtfKrell(CMakePackage):
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depends_on("cbtf@develop", when='@develop', type=('build', 'link', 'run'))
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depends_on("cbtf@1.9.3:9999", when='@1.9.3:9999', type=('build', 'link', 'run'))
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# For CBTF with cti
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depends_on("cbtf@develop+cti", when='@develop+cti', type=('build', 'link', 'run'))
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depends_on("cbtf@1.9.3:9999+cti", when='@1.9.3:9999+cti', type=('build', 'link', 'run'))
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# For CBTF with runtime
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depends_on("cbtf@develop+runtime", when='@develop+runtime', type=('build', 'link', 'run'))
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depends_on("cbtf@1.9.3:9999+runtime", when='@1.9.3:9999+runtime', type=('build', 'link', 'run'))
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@ -25,15 +25,10 @@ class CbtfLanl(CMakePackage):
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variant('runtime', default=False,
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description="build only the runtime libraries and collectors.")
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variant('cti', default=False,
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description="Build MRNet with the CTI startup option")
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depends_on("cmake@3.0.2:", type='build')
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# For MRNet
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depends_on("mrnet@5.0.1-3:+cti", when='@develop+cti')
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop')
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depends_on("mrnet@5.0.1-3+cti", when='@1.9.3:9999+cti')
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depends_on("mrnet@5.0.1-3+lwthreads", when='@1.9.3:9999')
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# For Xerces-C
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@ -43,10 +38,6 @@ class CbtfLanl(CMakePackage):
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depends_on("cbtf@develop", when='@develop')
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depends_on("cbtf@1.9.3:9999", when='@1.9.3:9999')
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# For CBTF with cti
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depends_on("cbtf@develop+cti", when='@develop+cti')
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depends_on("cbtf@1.9.3:9999+cti", when='@1.9.3:9999+cti')
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# For CBTF with runtime
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depends_on("cbtf@develop+runtime", when='@develop+runtime')
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depends_on("cbtf@1.9.3:9999+runtime", when='@1.9.3:9999+runtime')
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@ -55,9 +46,6 @@ class CbtfLanl(CMakePackage):
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depends_on("cbtf-krell@develop", when='@develop')
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depends_on("cbtf-krell@1.9.3:9999", when='@1.9.3:9999')
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depends_on('cbtf-krell@develop+cti', when='@develop+cti')
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depends_on('cbtf-krell@1.9.3:9999+cti', when='@1.9.3:9999+cti')
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depends_on('cbtf-krell@develop+runtime', when='@develop+runtime')
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depends_on('cbtf-krell@1.9.3:9999+runtime', when='@1.9.3:9999+runtime')
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@ -21,9 +21,6 @@ class Cbtf(CMakePackage):
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version('1.9.4', branch='1.9.4')
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version('1.9.3', branch='1.9.3')
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variant('cti', default=False,
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description="Build MRNet with the CTI startup option")
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variant('runtime', default=False,
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description="build only the runtime libraries and collectors.")
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@ -42,9 +39,7 @@ class Cbtf(CMakePackage):
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depends_on("boost@1.70.0:")
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# For MRNet
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depends_on("mrnet@5.0.1-3:+cti", when='@develop+cti')
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop')
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depends_on("mrnet@5.0.1-3+cti", when='@1.9.3:9999+cti')
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depends_on("mrnet@5.0.1-3+lwthreads", when='@1.9.3:9999')
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# For Xerces-C
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@ -57,7 +57,6 @@ class Dd4hep(CMakePackage):
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# variants for subpackages
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variant('ddcad', default=True, description="Enable CAD interface based on Assimp")
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variant('ddg4', default=True, description="Enable the simulation part based on Geant4")
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variant('ddg4', default=True, description="Enable the simulation part based on Geant4")
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variant('ddrec', default=True, description="Build DDRec subpackage.")
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variant('dddetectors', default=True, description="Build DDDetectors subpackage.")
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variant('ddcond', default=True, description="Build DDCond subpackage.")
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@ -20,8 +20,8 @@ class Flecsale(CMakePackage):
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depends_on("pkgconfig", type='build')
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depends_on("cmake@3.1:", type='build')
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depends_on("flecsi~mpi", when='~mpi')
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depends_on("flecsi+mpi", when='+mpi')
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depends_on("flecsi backend=serial", when='~mpi')
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conflicts("^flecsi backend=serial", when='+mpi')
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depends_on("python")
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depends_on("openssl")
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depends_on("boost~mpi", when='~mpi')
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@ -138,7 +138,7 @@ class Flecsi(CMakePackage, CudaPackage):
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# Unit tests require flog support
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conflicts('+unit_tests', when='~flog')
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# Disallow conduit=none when using legion as a backend
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conflicts('legion conduit=none', when='backend=legion')
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conflicts('^legion conduit=none', when='backend=legion')
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# Due to overhauls of Legion and Gasnet spackages
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# flecsi@:1.9 can no longer be built with a usable legion
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conflicts('backend=legion', when='@:1.9')
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@ -22,7 +22,7 @@ class Grnboost(Package):
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depends_on('sbt', type='build')
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depends_on('java', type=('build', 'run'))
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depends_on('xgboost+jvm-packages', type='run')
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depends_on('xgboost', type='run')
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depends_on('spark+hadoop', type='run')
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def setup_run_environment(self, env):
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@ -35,7 +35,7 @@ class Nalu(CMakePackage):
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# Cannot build Trilinos as a shared library with STK on Darwin
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# which is why we have a 'shared' variant for Nalu
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# https://github.com/trilinos/Trilinos/issues/2994
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depends_on('trilinos+mpi+exodus+tpetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+zlib+shards~hypre@master')
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depends_on('trilinos+mpi+exodus+tpetra+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+shards~hypre@master')
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depends_on('trilinos~shared', when='~shared')
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# Optional dependencies
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depends_on('tioga', when='+tioga+shared')
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@ -21,7 +21,7 @@ class OpenIscsi(MakefilePackage):
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depends_on('gettext')
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depends_on('uuid')
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depends_on('util-linux+libmount')
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depends_on('util-linux')
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depends_on('kmod')
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depends_on('open-isns')
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depends_on('libtool', type='build')
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@ -39,8 +39,6 @@ class OpenspeedshopUtils(CMakePackage):
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variant('runtime', default=False,
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description="build only the runtime libraries and collectors.")
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variant('cti', default=False,
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description="Build MRNet with the CTI startup option")
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variant('crayfe', default=False,
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description="build only the FE tool using the runtime_dir \
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to point to target build.")
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@ -107,9 +105,6 @@ class OpenspeedshopUtils(CMakePackage):
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depends_on('cbtf-krell@develop+crayfe', when='@develop+crayfe', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@1.9.3:9999+crayfe', when='@2.4.0:9999+crayfe', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@develop+cti', when='@develop+cti', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@1.9.3:9999+cti', when='@2.4.0:9999+cti', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@develop+mpich', when='@develop+mpich', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@1.9.3:9999+mpich', when='@2.4.0:9999+mpich', type=('build', 'link', 'run'))
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@ -132,10 +127,7 @@ class OpenspeedshopUtils(CMakePackage):
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depends_on("cbtf-argonavis@1.9.3:9999", when='@2.4.0:9999+cuda', type=('build', 'link', 'run'))
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# For MRNet
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depends_on("mrnet@5.0.1-3:+cti", when='@develop+cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3:+cti", when='@2.4.0:9999+cti', type=('build', 'link', 'run'))
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depends_on("mrnet@5.0.1-3:+lwthreads", when='@2.4.0:9999', type=('build', 'link', 'run'))
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patch('arm.patch', when='target=aarch64:')
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@ -32,8 +32,6 @@ class Openspeedshop(CMakePackage):
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variant('runtime', default=False,
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description="build only the runtime libraries and collectors.")
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variant('cti', default=False,
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description="Build MRNet with the CTI startup option")
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variant('crayfe', default=False,
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description="build only the FE tool using the runtime_dir \
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to point to target build.")
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@ -105,9 +103,6 @@ class Openspeedshop(CMakePackage):
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depends_on('cbtf-krell@develop+crayfe', when='@develop+crayfe', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@1.9.3:9999+crayfe', when='@2.4.0:9999+crayfe', type=('build', 'link', 'run'))
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depends_on('cbtf-krell@develop+cti', when='@develop+cti', type=('build', 'link', 'run'))
|
||||
depends_on('cbtf-krell@1.9.3:9999+cti', when='@2.4.0:9999+cti', type=('build', 'link', 'run'))
|
||||
|
||||
depends_on('cbtf-krell@develop+mpich', when='@develop+mpich', type=('build', 'link', 'run'))
|
||||
depends_on('cbtf-krell@1.9.3:9999+mpich', when='@2.4.0:9999+mpich', type=('build', 'link', 'run'))
|
||||
|
||||
|
|
@ -130,10 +125,7 @@ class Openspeedshop(CMakePackage):
|
|||
depends_on("cbtf-argonavis@1.9.3:9999", when='@2.4.0:9999+cuda', type=('build', 'link', 'run'))
|
||||
|
||||
# For MRNet
|
||||
depends_on("mrnet@5.0.1-3:+cti", when='@develop+cti', type=('build', 'link', 'run'))
|
||||
depends_on("mrnet@5.0.1-3:+lwthreads", when='@develop', type=('build', 'link', 'run'))
|
||||
|
||||
depends_on("mrnet@5.0.1-3:+cti", when='@2.4.0:9999+cti', type=('build', 'link', 'run'))
|
||||
depends_on("mrnet@5.0.1-3:+lwthreads", when='@2.4.0:9999', type=('build', 'link', 'run'))
|
||||
|
||||
patch('arm.patch', when='target=aarch64:')
|
||||
|
|
|
|||
|
|
@ -25,7 +25,7 @@ class Percept(CMakePackage):
|
|||
depends_on('opennurbs@percept')
|
||||
depends_on('boost+graph+mpi')
|
||||
depends_on('yaml-cpp+pic~shared@0.5.3:')
|
||||
depends_on('trilinos~shared+exodus+mpi+tpetra+epetra+epetraext+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+zlib+aztec+sacado~openmp+shards+intrepid@master,12.14.1:')
|
||||
depends_on('trilinos~shared+exodus+mpi+tpetra+epetra+epetraext+muelu+belos+ifpack2+amesos2+zoltan+stk+boost~superlu-dist+superlu+hdf5+aztec+sacado~openmp+shards+intrepid@master,12.14.1:')
|
||||
|
||||
def cmake_args(self):
|
||||
spec = self.spec
|
||||
|
|
|
|||
|
|
@ -31,7 +31,7 @@ class Phyluce(PythonPackage):
|
|||
depends_on('mafft', type='run')
|
||||
depends_on('muscle', type='run')
|
||||
depends_on('picard', type='run')
|
||||
depends_on('raxml+pthreads+sse', type='run')
|
||||
depends_on('raxml+pthreads', type='run')
|
||||
depends_on('samtools', type='run')
|
||||
depends_on('seqtk', type='run')
|
||||
depends_on('spades', type='run')
|
||||
|
|
|
|||
|
|
@ -20,7 +20,7 @@ class PyMmcv(PythonPackage):
|
|||
depends_on('py-addict', type=('build', 'run'))
|
||||
depends_on('py-numpy@1.11.1:', type=('build', 'run'))
|
||||
depends_on('py-pyyaml', type=('build', 'run'))
|
||||
depends_on('opencv+python', type=('build', 'run'))
|
||||
depends_on('opencv+python3', type=('build', 'run'))
|
||||
depends_on('py-cython', type='build')
|
||||
|
||||
patch('opencv_for0.5.1.patch', when='@0.5.1')
|
||||
|
|
|
|||
|
|
@ -14,7 +14,7 @@ class PyPythonqwt(PythonPackage):
|
|||
|
||||
version('0.5.5', sha256='1f13cc8b555a57f8fe0f806d6c2f6d847050e4d837649503932b81316d12788a')
|
||||
|
||||
variant('doc', default=False, description="Build documentation.")
|
||||
variant('docs', default=False, description="Build documentation.")
|
||||
|
||||
depends_on('py-setuptools', type='build')
|
||||
depends_on('py-numpy@1.3:', type=('build', 'run'))
|
||||
|
|
|
|||
|
|
@ -133,7 +133,6 @@ class Sollve(CMakePackage):
|
|||
revision=372427, destination='projects',
|
||||
when='@1.0a2+internal_unwind', placement='libunwind')
|
||||
|
||||
conflicts('+clang_extra', when='~clang')
|
||||
conflicts('+lldb', when='~clang')
|
||||
|
||||
conflicts('%gcc@:5.0')
|
||||
|
|
|
|||
Loading…
Reference in a new issue