openmpi: updated package (#7574)
Modifications: * Added zlib dependency, starting from version 3.0.0 * Added memchecker support for debugging * Remove mpirun and similar links if slurm is selected as a scheduler
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@ -201,6 +201,17 @@ class Openmpi(AutotoolsPackage):
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variant('cuda', default=False, description='Enable CUDA support')
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variant('ucx', default=False, description='Enable UCX support')
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variant('pmi', default=False, description='Enable PMI support')
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# Adding support to build a debug version of OpenMPI that activates
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# Memchecker, as described here:
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#
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# https://www.open-mpi.org/faq/?category=debugging#memchecker_what
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#
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# This option degrades run-time support, and thus is disabled by default
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variant(
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'memchecker',
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default=False,
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description='Memchecker support for debugging [degrades performance]'
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)
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provides('mpi')
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provides('mpi@:2.2', when='@1.6.5')
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@ -218,6 +229,8 @@ class Openmpi(AutotoolsPackage):
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depends_on('java', when='+java')
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depends_on('sqlite', when='+sqlite3@:1.11')
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depends_on('ucx', when='+ucx')
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depends_on('zlib', when='@3.0.0:')
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depends_on('valgrind~mpi', when='+memchecker')
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conflicts('+cuda', when='@:1.6') # CUDA support was added in 1.7
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conflicts('fabrics=psm2', when='@:1.8') # PSM2 support was added in 1.10.0
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@ -320,6 +333,9 @@ def configure_args(self):
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# for Open-MPI 2.0:, C++ bindings are disabled by default.
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config_args.extend(['--enable-mpi-cxx'])
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if spec.satisfies('@3.0.0:', strict=True):
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config_args.append('--with-zlib={0}'.format(spec['zlib'].prefix))
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# Fabrics
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config_args.extend(self.with_or_without('fabrics'))
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# Schedulers
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@ -327,6 +343,13 @@ def configure_args(self):
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# PMI
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config_args.extend(self.with_or_without('pmi'))
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config_args.extend(self.enable_or_disable('memchecker'))
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if spec.satisfies('+memchecker', strict=True):
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config_args.extend([
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'--enable-debug',
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'--with-valgrind={0}'.format(spec['valgrind'].prefix),
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])
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# Hwloc support
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if spec.satisfies('@1.5.2:'):
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config_args.append('--with-hwloc={0}'.format(spec['hwloc'].prefix))
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@ -398,3 +421,18 @@ def configure_args(self):
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config_args.append('--without-ucx')
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return config_args
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@run_after('install')
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def delete_mpirun_mpiexec(self):
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# The preferred way to run an application when Slurm is the
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# scheduler is to let Slurm manage process spawning via PMI.
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#
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# Deleting the links to orterun avoids users running their
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# applications via mpirun or mpiexec, and leaves srun as the
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# only sensible choice (orterun is still present, but normal
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# users don't know about that).
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if '@1.6: schedulers=slurm' in self.spec:
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os.remove(self.prefix.bin.mpirun)
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os.remove(self.prefix.bin.mpiexec)
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os.remove(self.prefix.bin.shmemrun)
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os.remove(self.prefix.bin.oshrun)
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