sentieon-genomics: add version 202112.02, remove manual download (#30145)
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1 changed files with 11 additions and 10 deletions
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@ -3,8 +3,6 @@
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os.path
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from spack import *
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@ -12,20 +10,23 @@ class SentieonGenomics(Package):
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"""Sentieon provides complete solutions for secondary DNA analysis.
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Our software improves upon BWA, GATK, Mutect, and Mutect2 based pipelines.
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The Sentieon tools are deployable on any CPU-based computing system.
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Use of this software is subject to the EULA at:
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https://www.sentieon.com/EULA/eula-aws.html
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Please set the path to the sentieon license server with:
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export SENTIEON_LICENSE=[FQDN]:[PORT]
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Note: A manual download is required.
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Spack will search your current directory for the download file.
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Alternatively, add this file to a mirror so that Spack can find it.
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For instructions on how to set up a mirror, see
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https://spack.readthedocs.io/en/latest/mirrors.html"""
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"""
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homepage = "https://www.sentieon.com/"
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url = "file://{0}/sentieon-genomics-201808.01.tar.gz".format(os.getcwd())
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manual_download = True
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# url is from the permalink documented in dockerfile at
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# https://github.com/Sentieon/sentieon-docker/blob/master/Dockerfile
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# See also: https://github.com/spack/spack/pull/30145/files#r853275635
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url = "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-201808.01.tar.gz"
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maintainers = ['snehring']
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version('202112.02', sha256='033943df7958550fd42b410d34ae91a8956a905fc90ca8baa93d2830f918872c')
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version('201808.07', sha256='fb66b18a7b99e44968eb2c3a6a5b761d6b1e70fba9f7dfc4e5db3a74ab3d3dd9')
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version('201808.01', sha256='6d77bcd5a35539549b28eccae07b19a3b353d027720536e68f46dcf4b980d5f7')
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