sentieon-genomics: add version 202112.02, remove manual download (#30145)

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snehring 2022-05-11 12:38:24 -05:00 committed by GitHub
parent 2ed542b744
commit 8bd893367d
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@ -3,8 +3,6 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import os.path
from spack import *
@ -12,20 +10,23 @@ class SentieonGenomics(Package):
"""Sentieon provides complete solutions for secondary DNA analysis.
Our software improves upon BWA, GATK, Mutect, and Mutect2 based pipelines.
The Sentieon tools are deployable on any CPU-based computing system.
Use of this software is subject to the EULA at:
https://www.sentieon.com/EULA/eula-aws.html
Please set the path to the sentieon license server with:
export SENTIEON_LICENSE=[FQDN]:[PORT]
Note: A manual download is required.
Spack will search your current directory for the download file.
Alternatively, add this file to a mirror so that Spack can find it.
For instructions on how to set up a mirror, see
https://spack.readthedocs.io/en/latest/mirrors.html"""
"""
homepage = "https://www.sentieon.com/"
url = "file://{0}/sentieon-genomics-201808.01.tar.gz".format(os.getcwd())
manual_download = True
# url is from the permalink documented in dockerfile at
# https://github.com/Sentieon/sentieon-docker/blob/master/Dockerfile
# See also: https://github.com/spack/spack/pull/30145/files#r853275635
url = "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-201808.01.tar.gz"
maintainers = ['snehring']
version('202112.02', sha256='033943df7958550fd42b410d34ae91a8956a905fc90ca8baa93d2830f918872c')
version('201808.07', sha256='fb66b18a7b99e44968eb2c3a6a5b761d6b1e70fba9f7dfc4e5db3a74ab3d3dd9')
version('201808.01', sha256='6d77bcd5a35539549b28eccae07b19a3b353d027720536e68f46dcf4b980d5f7')