From 854a82bbecc368291daec4a57a38c1fa36fbcfb1 Mon Sep 17 00:00:00 2001 From: ilbiondo <61497728+ilbiondo@users.noreply.github.com> Date: Fri, 17 Apr 2020 16:50:33 +0200 Subject: [PATCH] New package: Biopandas python package (#16066) * Biopandas python package * Update var/spack/repos/builtin/packages/py-biopandas/package.py Co-Authored-By: Adam J. Stewart * Update var/spack/repos/builtin/packages/py-biopandas/package.py Co-Authored-By: Adam J. Stewart * remove scipy dependency Co-authored-by: Adam J. Stewart --- .../builtin/packages/py-biopandas/package.py | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 var/spack/repos/builtin/packages/py-biopandas/package.py diff --git a/var/spack/repos/builtin/packages/py-biopandas/package.py b/var/spack/repos/builtin/packages/py-biopandas/package.py new file mode 100644 index 0000000000..720bd34d28 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-biopandas/package.py @@ -0,0 +1,24 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyBiopandas(PythonPackage): + """Working with molecular structures in pandas DataFrames""" + + homepage = "http://rasbt.github.io/biopandas" + url = "https://pypi.io/packages/source/b/biopandas/biopandas-0.2.5.tar.gz" + git = "https://github.com/rasbt/biopandas.git" + + # Note that the source package on PyPi is broken as it + # is missing the requirements.txt so we have to download + # from github + + version('0.2.5', branch="v0.2.5") + + depends_on('python@3.5:', type=('build', 'run')) + depends_on('py-pandas@0.24.2:', type=('build', 'run')) + depends_on('py-numpy@1.16.2:', type=('build', 'run'))