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plink: new source version 1.9-beta5 (#8076)

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* plink: new source version 1.9-beta5

* plink: replace version 1.9 with 1.07
This commit is contained in:
Yifan Zhu 2018-05-12 18:38:22 -05:00 committed by Adam J. Stewart
parent 8dd5ac357c
commit 8270344042
1 changed files with 16 additions and 4 deletions
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18
var/spack/repos/builtin/packages/plink/package.py
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@ -32,10 +32,22 @@ class Plink(Package):
homepage = "https://www.cog-genomics.org/plink/1.9/" homepage = "https://www.cog-genomics.org/plink/1.9/"
version('1.9', 'a2325881594856c0f1b7523290d1e04f', version('1.9-beta5', '737545504ae19348a44a05fa69b75c28',
url='https://www.cog-genomics.org/static/bin/plink170815/plink_linux_x86_64.zip') url='https://github.com/chrchang/plink-ng/archive/b15c19f.tar.gz')
version('1.07', 'fd0bafeda42151b20534e4f97b0d97df',
url='http://zzz.bwh.harvard.edu/plink/dist/plink-1.07-x86_64.zip',
preferred=True)
depends_on('atlas', when='@1.9-beta5')
depends_on('netlib-lapack', when='@1.9-beta5')
def install(self, spec, prefix): def install(self, spec, prefix):
mkdirp(prefix.bin) mkdirp(prefix.bin)
if spec.version == Version('1.07'):
install('plink', prefix.bin)
install('gPLINK.jar', prefix.bin)
if spec.version == Version('1.9-beta5'):
with working_dir('1.9'):
first_compile = Executable('./plink_first_compile')
first_compile()
install('plink', prefix.bin) install('plink', prefix.bin)
install('prettify', prefix.bin)