diff --git a/var/spack/repos/builtin/packages/py-pybedtools/package.py b/var/spack/repos/builtin/packages/py-pybedtools/package.py new file mode 100644 index 0000000000..a0bab2d445 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pybedtools/package.py @@ -0,0 +1,23 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyPybedtools(PythonPackage): + """Python wrapper -- and more -- for Aaron Quinlan's BEDTools""" + + homepage = "http://daler.github.io/pybedtools" + url = "https://github.com/daler/pybedtools/archive/v0.6.9.tar.gz" + + version('0.6.9', sha256='2639e80917999e76572017fd93757e8d7ceb384f0b92647ccfdd23a0d60def7c') + + depends_on('bedtools2', type='run') + depends_on('py-cython', type=('build', 'run')) + depends_on('py-pysam', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-six', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-setuptools', type='build')