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py-bakta: new package (#33417)

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Luke Diorio-Toth 2022-10-20 08:22:59 -05:00 committed by GitHub
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commit 70d2556f4b
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyBakta(PythonPackage):
"""Bakta: rapid & standardized annotation
of bacterial genomes, MAGs & plasmids"""
homepage = "https://github.com/oschwengers/bakta"
pypi = "bakta/bakta-1.5.1.tar.gz"
maintainers = ["oschwengers"]
version("1.5.1", sha256="36781612c4eaa99e6e24a00e8ab5b27dadf21c98ae6d16432f3e78c96a4adb5d")
depends_on("python@3.8:", type=("build", "run"))
depends_on("py-setuptools", type=("build", "run"))
depends_on("py-biopython@1.78:", type=("build", "run"))
depends_on("py-xopen@1.1.0:", type=("build", "run"))
depends_on("py-requests@2.25.1:", type=("build", "run"))
depends_on("py-alive-progress@1.6.2", type=("build", "run"))
depends_on("trnascan-se@2.0.8:", type=("build", "run"))
depends_on("aragorn@1.2.38:", type=("build", "run"))
depends_on("infernal@1.1.4:", type=("build", "run"))
depends_on("pilercr@1.06:", type=("build", "run"))
depends_on("prodigal@2.6.3:", type=("build", "run"))
depends_on("hmmer@3.3.2:", type=("build", "run"))
depends_on("diamond@2.0.14:", type=("build", "run"))
depends_on("blast-plus@2.12.0:", type=("build", "run"))
depends_on("amrfinder@3.10.23:", type=("build", "run"))
depends_on("py-deepsig-biocomp@1.2.5:", type=("build", "run"))