hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

py-instrain: added required + optional dependency (#33465)

Browse source 
* added py-instrain dependencies

* fixed style

* removed coverm dep until I have a working coverm package

* added dep documentation
This commit is contained in:
Luke Diorio-Toth 2022-10-21 14:54:23 -05:00 committed by GitHub
parent b1836a7c50
commit 6fdb8b2682
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 8 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
var/spack/repos/builtin/packages/py-instrain/package.py
View file

@ -17,6 +17,8 @@ class PyInstrain(PythonPackage):
homepage = "https://github.com/MrOlm/instrain"
pypi = "inStrain/inStrain-1.5.7.tar.gz"
variant("prodigal", default=False, description="Enables profiling on a gene by gene level")
version("1.5.7", sha256="c5dcb01dae244927fe987b5f0695d895ccf521c9dfd87a2cb59057ad50bd9bfa")
depends_on("python@3.4.0:", type=("build", "run"))
@ -35,3 +37,9 @@ class PyInstrain(PythonPackage):
depends_on("py-psutil", type=("build", "run"))
depends_on("py-lmfit", type=("build", "run"))
depends_on("py-numba", type=("build", "run"))
# non-python dependencies
# https://instrain.readthedocs.io/en/latest/installation.html#dependencies
# Essential dependencies
depends_on("samtools", type=("build", "run"))
# Optional dependencies
depends_on("prodigal", type=("build", "run"), when="+prodigal")