add ginkgo package, use it in dealii along with symengine (#10917)
This commit is contained in:
Denis Davydov
Massimiliano Culpo
parent
724acb6421
commit
6d971c4493
3 changed files with 76 additions and 3 deletions
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@ -41,6 +41,7 @@ class Dealii(CMakePackage, CudaPackage):
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description='Compile with Adol-c')
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variant('doc', default=False,
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description='Compile with documentation')
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variant('ginkgo', default=False, description='Compile wit Ginkgo')
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variant('gmsh', default=True, description='Compile with GMSH')
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variant('gsl', default=True, description='Compile with GSL')
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variant('hdf5', default=True,
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@ -61,6 +62,8 @@ class Dealii(CMakePackage, CudaPackage):
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description='Compile with Sundials')
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variant('slepc', default=True,
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description='Compile with Slepc (only with Petsc and MPI)')
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variant('symengine', default=False,
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description='Compile with SymEngine')
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variant('trilinos', default=True,
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description='Compile with Trilinos (only with MPI)')
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variant('python', default=False,
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@ -115,16 +118,17 @@ class Dealii(CMakePackage, CudaPackage):
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depends_on('assimp', when='@9.0:+assimp')
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depends_on('doxygen+graphviz', when='+doc')
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depends_on('graphviz', when='+doc')
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depends_on('ginkgo', when='@9.1:+ginkgo')
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depends_on('gmsh+tetgen+netgen+oce', when='@9.0:+gmsh', type=('build', 'run'))
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depends_on('gsl', when='@8.5.0:+gsl')
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# FIXME: next line fixes concretization with petsc
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depends_on('hdf5+mpi+hl+fortran', when='+hdf5+mpi+petsc')
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depends_on('hdf5+mpi+hl', when='+hdf5+mpi~petsc')
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depends_on('cuda@8:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda')
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depends_on('cmake@3.9:', when='+cuda', type='build')
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# older version of deal.II do not build with Cmake 3.10, see
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# https://github.com/dealii/dealii/issues/5510
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depends_on('cmake@:3.9.99', when='@:8.99')
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depends_on('cmake@:3.9.99', when='@:8.99', type='build')
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# FIXME: concretizer bug. The two lines mimic what comes from PETSc
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# but we should not need it
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depends_on('metis@5:+int64', when='+metis+int64')
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@ -144,6 +148,7 @@ class Dealii(CMakePackage, CudaPackage):
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depends_on('slepc@:3.6.3', when='@:8.4.1+slepc+petsc+mpi')
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depends_on('slepc~arpack', when='+slepc+petsc+mpi+int64')
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depends_on('sundials@:3~pthread', when='@9.0:+sundials')
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depends_on('symengine@0.3:', when='@9.1:+symengine')
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# do not require +rol to make concretization of xsdk possible
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos', when='+trilinos+mpi~int64~cuda')
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depends_on('trilinos+amesos+aztec+epetra+ifpack+ml+muelu+sacado+teuchos~hypre', when='+trilinos+mpi+int64~cuda')
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@ -172,6 +177,13 @@ class Dealii(CMakePackage, CudaPackage):
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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# interfaces added in 9.1.0:
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for p in ['ginkgo', 'symengine']:
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conflicts('+{0}'.format(p), when='@:9.0',
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msg='The interface to {0} is supported from version 9.1.0 '
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'onwards. Please explicitly disable this variant '
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'via ~{0}'.format(p))
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conflicts('+slepc', when='~petsc',
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msg='It is not possible to enable slepc interfaces '
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'without petsc.')
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@ -310,7 +322,8 @@ def cmake_args(self):
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# variables:
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for library in (
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'gsl', 'hdf5', 'p4est', 'petsc', 'slepc', 'trilinos', 'metis',
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'sundials', 'nanoflann', 'assimp', 'gmsh', 'muparser'):
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'sundials', 'nanoflann', 'assimp', 'gmsh', 'muparser',
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'symengine', 'ginkgo'):
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if ('+' + library) in spec:
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options.extend([
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'-D%s_DIR=%s' % (library.upper(), spec[library].prefix),
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43
var/spack/repos/builtin/packages/ginkgo/package.py
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43
var/spack/repos/builtin/packages/ginkgo/package.py
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@ -0,0 +1,43 @@
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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import sys
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class Ginkgo(CMakePackage, CudaPackage):
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"""High-performance linear algebra library for manycore systems,
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with a focus on sparse solution of linear systems."""
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homepage = "https://github.com/ginkgo-project/ginkgo"
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url = "https://github.com/ginkgo-project/ginkgo.git"
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git = "https://github.com/ginkgo-project/ginkgo.git"
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version('develop', branch='develop')
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# Ginkgo has problems with circular dependencies and shared libs, see
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# https://github.com/ginkgo-project/ginkgo/issues/203
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# Thus keep default to False for now
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variant('shared', default=False, description='Build shared libraries')
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variant('openmp', default=sys.platform != 'darwin', description='Build with OpenMP')
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variant('build_type', default='Release',
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description='The build type to build',
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values=('Debug', 'Release'))
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depends_on('cmake@3.9:', type='build')
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depends_on('cuda@9:', when='+cuda')
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# issues with ** expression, see
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# https://github.com/ginkgo-project/ginkgo/issues/270#issuecomment-473901621
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patch('static.patch')
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def cmake_args(self):
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spec = self.spec
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return [
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'-DGINKGO_BUILD_CUDA=%s' % ('ON' if '+cuda' in spec else 'OFF'),
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'-DGINKGO_BUILD_OMP=%s' % ('ON' if '+openmp' in spec else 'OFF'),
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'-DBUILD_SHARED_LIBS=%s' % ('ON' if '+shared' in spec else 'OFF'),
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'-DGINKGO_BUILD_BENCHMARKS=OFF'
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]
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17
var/spack/repos/builtin/packages/ginkgo/static.patch
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17
var/spack/repos/builtin/packages/ginkgo/static.patch
Normal file
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@ -0,0 +1,17 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index e5fae68..807a7dc 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -109,9 +109,9 @@ if(GINKGO_DEVEL_TOOLS)
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endif()
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# Generate the global `ginkgo/ginkgo.hpp` header with every call of make
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-add_custom_target(generate_ginkgo_header ALL
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- COMMAND ${Ginkgo_SOURCE_DIR}/dev_tools/scripts/update_ginkgo_header.sh
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- WORKING_DIRECTORY ${Ginkgo_SOURCE_DIR})
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+# add_custom_target(generate_ginkgo_header ALL
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+# COMMAND ${Ginkgo_SOURCE_DIR}/dev_tools/scripts/update_ginkgo_header.sh
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+# WORKING_DIRECTORY ${Ginkgo_SOURCE_DIR})
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if(GINKGO_BUILD_DOC)
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add_subdirectory(doc)
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