From 5f04b0c53877cfbe070126c7ac5920a1fe90515b Mon Sep 17 00:00:00 2001 From: Eric Date: Tue, 24 Apr 2018 21:31:37 -0500 Subject: [PATCH] new package: py-weblogo (#7886) --- .../repos/builtin/packages/pdf2svg/package.py | 38 ++++++++++++++++++ .../repos/builtin/packages/poppler/package.py | 36 +++++++++++++++++ .../builtin/packages/py-weblogo/package.py | 40 +++++++++++++++++++ 3 files changed, 114 insertions(+) create mode 100644 var/spack/repos/builtin/packages/pdf2svg/package.py create mode 100644 var/spack/repos/builtin/packages/poppler/package.py create mode 100644 var/spack/repos/builtin/packages/py-weblogo/package.py diff --git a/var/spack/repos/builtin/packages/pdf2svg/package.py b/var/spack/repos/builtin/packages/pdf2svg/package.py new file mode 100644 index 0000000000..40626e2700 --- /dev/null +++ b/var/spack/repos/builtin/packages/pdf2svg/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Pdf2svg(AutotoolsPackage): + """A simple PDF to SVG converter using the Poppler and Cairo libraries.""" + + homepage = "http://www.cityinthesky.co.uk/opensource/pdf2svg" + url = "https://github.com/dawbarton/pdf2svg/archive/v0.2.3.tar.gz" + + version('0.2.3', 'd398b3b1c1979f554596238a44f12123') + version('0.2.2', 'f7e0d2213f9e1422cee9421e18f72553') + + depends_on('cairo', type='run') + depends_on('poppler', type='run') diff --git a/var/spack/repos/builtin/packages/poppler/package.py b/var/spack/repos/builtin/packages/poppler/package.py new file mode 100644 index 0000000000..8a8f9d3cf9 --- /dev/null +++ b/var/spack/repos/builtin/packages/poppler/package.py @@ -0,0 +1,36 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Poppler(CMakePackage): + """Poppler is a PDF rendering library based on the xpdf-3.0 code base.""" + + homepage = "http://poppler.freedesktop.org" + url = "https://poppler.freedesktop.org/poppler-0.64.0.tar.xz" + + version('0.64.0', 'f7f687ebb60004f8ad61994575018044') + + depends_on('openjpeg', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-weblogo/package.py b/var/spack/repos/builtin/packages/py-weblogo/package.py new file mode 100644 index 0000000000..fd01da070c --- /dev/null +++ b/var/spack/repos/builtin/packages/py-weblogo/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyWeblogo(PythonPackage): + """WebLogo is a web based application designed to make the generation of + sequence logos as easy and painless as possible.""" + + homepage = "http://weblogo.threeplusone.com" + url = "https://pypi.io/packages/source/w/weblogo/weblogo-3.6.0.tar.gz" + + version('3.6.0', 'd0764f218057543fa664d2ae17d37b6d') + + depends_on('py-setuptools', type='build') + depends_on('ghostscript', type=('build', 'run')) + depends_on('pdf2svg', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run'))