r-absseq: Create new package. (#5617)

var/spack/repos/builtin/packages/r-absseq/package.py

@@ -0,0 +1,40 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RAbsseq(RPackage):
+    """Inferring differential expression genes by absolute counts
+    difference between two groups, utilizing Negative binomial
+    distribution and moderating fold-change according to heterogeneity
+    of dispersion across expression level."""
+
+    homepage = "https://www.bioconductor.org/packages/ABSSeq/"
+    url      = "https://www.bioconductor.org/packages/release/bioc/src/contrib/ABSSeq_1.22.8.tar.gz"
+
+    version('1.22.8', 'bfdb1800f2e7c60dfa7f6b43026ec8f9')
+
+    depends_on('r-locfit', type=('build', 'run'))
+    depends_on('r-limma', type=('build', 'run'))