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fix ipyrad numpy dependencies (#42098)

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* fix ipyrad numpy depedencies

ipyrad versions through 0.9.90 use np.int, which is deprecated in numpy 1.20.

* fix whitespace

* Correct numpy dependency restrictions
This commit is contained in:
Mike Renfro 2024-02-04 05:16:22 -06:00 committed by GitHub
parent f2125882c5
commit 55ecc47dce
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GPG key ID: B5690EEEBB952194
1 changed files with 7 additions and 1 deletions
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var/spack/repos/builtin/packages/py-ipyrad/package.py
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@ -17,6 +17,9 @@ class PyIpyrad(PythonPackage):
license("GPL-3.0-only")
version("0.9.93", sha256="7f42396c0baa284dde0e9896270006f3c7e2211fa93bb149decccd39b4ab557e")
version("0.9.92", sha256="f9cb5eca40d5fc1d93364815af7608d0b2e89fcf675724541a50e7159617395f")
version("0.9.91", sha256="0308b829a8995db90608e8f45b76709d394d9153ec5edee568acdd41ecfab59c")
version("0.9.90", sha256="8b95aa3bae30da15baba90abb03176932411ff708c54d5e4481b811cceb8a4a8")
version("0.9.85", sha256="17b07466531655db878919e426743ac649cfab2e92c06c4e45f76ee1517633f9")
@ -30,7 +33,10 @@ class PyIpyrad(PythonPackage):
depends_on("py-notebook", type=("build", "run"))
depends_on("samtools", type=("build", "run"))
depends_on("vsearch", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
depends_on("py-numpy@:1.23", when="@:0.9.90", type=("build", "run"))
# https://github.com/spack/spack/pull/42098 indicates 0.9.90 and below use
# np.int and related functions, deprecated in 1.20 and expired in 1.24.
depends_on("py-numpy", when="@0.9.91:", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-h5py", type=("build", "run"))