fastx-toolkit builds with newer gcc's (#10228)

There's a missing break in a switch statement that newer gcc's
dislike.

Our #4696 simply disallowed newer gcc's.

This fixes the problem instead.

It's been [PR'ed upstream](https://github.com/agordon/fastx_toolkit/pull/22).

Tested with gcc@5.5.0 and gcc@8.2.0 on CentOS.
This commit is contained in:
George Hartzell 2018-12-31 14:12:51 -08:00 committed by Adam J. Stewart
parent 7aeff18b6f
commit 51fbd315e9
2 changed files with 13 additions and 1 deletions

View file

@ -17,4 +17,5 @@ class FastxToolkit(AutotoolsPackage):
depends_on('libgtextutils')
conflicts('%gcc@7.1.0:')
# patch implicit fallthrough
patch("pr-22.patch")

View file

@ -0,0 +1,11 @@
diff -ur fastx_toolkit-0.0.14.orig/src/fasta_formatter/fasta_formatter.cpp fastx_toolkit-0.0.14/src/fasta_formatter/fasta_formatter.cpp
--- fastx_toolkit-0.0.14.orig/src/fasta_formatter/fasta_formatter.cpp 2014-01-05 13:10:49.000000000 -0800
+++ fastx_toolkit-0.0.14/src/fasta_formatter/fasta_formatter.cpp 2018-12-31 09:58:21.923778569 -0800
@@ -103,6 +103,7 @@
switch(opt) {
case 'h':
usage();
+ break;
case 'i':
input_filename = optarg;