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cdo: help libtool to find the correct paths to libraries (#22670)

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- Add a maintainer
- Help libtool to find the correct paths to libraries
- Handle externals from system directories
- Enable eccodes for older versions
This commit is contained in:
Sergey Kosukhin 2021-04-06 11:15:29 +02:00 committed by GitHub
parent fbed5d1eb5
commit 47c13bc6ca
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GPG key ID: 4AEE18F83AFDEB23
1 changed files with 60 additions and 23 deletions
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81
var/spack/repos/builtin/packages/cdo/package.py
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@ -3,7 +3,10 @@
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from collections import defaultdict
from spack import *
from spack.util.environment import is_system_path
class Cdo(AutotoolsPackage):
@ -15,7 +18,7 @@ class Cdo(AutotoolsPackage):
url = 'https://code.mpimet.mpg.de/attachments/download/12760/cdo-1.7.2.tar.gz'
list_url = 'https://code.mpimet.mpg.de/projects/cdo/files'
maintainers = ['skosukhin']
maintainers = ['skosukhin', 'Try2Code']
version('1.9.10', sha256='cc39c89bbb481d7b3945a06c56a8492047235f46ac363c4f0d980fccdde6677e', url='https://code.mpimet.mpg.de/attachments/download/24638/cdo-1.9.10.tar.gz')
version('1.9.9', sha256='959b5b58f495d521a7fd1daa84644888ec87d6a0df43f22ad950d17aee5ba98d', url='https://code.mpimet.mpg.de/attachments/download/23323/cdo-1.9.9.tar.gz')
@ -54,8 +57,8 @@ class Cdo(AutotoolsPackage):
depends_on('pkgconfig', type='build')
depends_on('netcdf-c', when='+netcdf')
# In this case CDO does not depend on hdf5 directly but we need the backend
# of netcdf to be thread safe.
# The internal library of CDO implicitly links to hdf5.
# We also need the backend of netcdf to be thread safe.
depends_on('hdf5+threadsafe', when='+netcdf')
depends_on('grib-api', when='grib2=grib-api')
@ -75,25 +78,46 @@ class Cdo(AutotoolsPackage):
depends_on('magics', when='+magics')
depends_on('uuid')
conflicts('grib2=eccodes', when='@:1.8',
msg='Eccodes is supported starting version 1.9.0')
conflicts('+szip', when='+external-grib1 grib2=none',
msg='The configuration does not support GRIB1')
conflicts('%gcc@9:', when='@:1.9.6',
msg='GCC 9 changed OpenMP data sharing behavior')
def configure_args(self):
config_args = self.with_or_without(
'netcdf',
activation_value=lambda x: self.spec['netcdf-c'].prefix)
config_args = []
flags = defaultdict(list)
def yes_or_prefix(spec_name):
prefix = self.spec[spec_name].prefix
return 'yes' if is_system_path(prefix) else prefix
if '+netcdf' in self.spec:
config_args.append('--with-netcdf=' + yes_or_prefix('netcdf-c'))
# We need to make sure that the libtool script of libcdi - the
# internal library of CDO - finds the correct version of hdf5.
# Note that the argument of --with-hdf5 is not passed to the
# configure script of libcdi, therefore we have to provide
# additional flags regardless of whether hdf5 support is enabled.
hdf5_spec = self.spec['hdf5']
if not is_system_path(hdf5_spec.prefix):
flags['LDFLAGS'].append(self.spec['hdf5'].libs.search_flags)
else:
config_args.append('--without-netcdf')
if self.spec.variants['grib2'].value == 'eccodes':
config_args.append('--with-eccodes=' +
self.spec['eccodes'].prefix)
if self.spec.satisfies('@1.9:'):
config_args.append('--with-eccodes=' + yes_or_prefix('eccodes'))
config_args.append('--without-grib_api')
else:
config_args.append('--with-grib_api=yes')
eccodes_spec = self.spec['eccodes']
eccodes_libs = eccodes_spec.libs
flags['LIBS'].append(eccodes_libs.link_flags)
if not is_system_path(eccodes_spec.prefix):
flags['LDFLAGS'].append(eccodes_libs.search_flags)
elif self.spec.variants['grib2'].value == 'grib-api':
config_args.append('--with-grib_api=' +
self.spec['grib-api'].prefix)
config_args.append('--with-grib_api=' + yes_or_prefix('grib-api'))
if self.spec.satisfies('@1.9:'):
config_args.append('--without-eccodes')
else:
@ -107,28 +131,39 @@ def configure_args(self):
config_args.append('--enable-cgribex')
if '+szip' in self.spec:
config_args.append('--with-szlib=' + self.spec['szip'].prefix)
config_args.append('--with-szlib=' + yes_or_prefix('szip'))
else:
config_args.append('--without-szlib')
config_args += self.with_or_without('hdf5',
activation_value='prefix')
activation_value=yes_or_prefix)
config_args += self.with_or_without(
'udunits2',
activation_value=lambda x: self.spec['udunits'].prefix)
activation_value=lambda x: yes_or_prefix('udunits'))
config_args += self.with_or_without('libxml2',
activation_value='prefix')
if '+libxml2' in self.spec:
libxml2_spec = self.spec['libxml2']
if is_system_path(libxml2_spec.prefix):
config_args.append('--with-libxml2=yes')
# Spack does not inject the header search flag in this case,
# which is still required, unless libxml2 is installed to '/usr'
# (handled by the configure script of CDO).
if libxml2_spec.prefix != '/usr':
flags['CPPFLAGS'].append(libxml2_spec.headers.include_flags)
else:
config_args.append('--with-libxml2=' + libxml2_spec.prefix)
else:
config_args.append('--without-libxml2')
config_args += self.with_or_without('proj',
activation_value='prefix')
activation_value=yes_or_prefix)
config_args += self.with_or_without('curl',
activation_value='prefix')
activation_value=yes_or_prefix)
config_args += self.with_or_without('magics',
activation_value='prefix')
activation_value=yes_or_prefix)
config_args += self.with_or_without('fftw3')
@ -140,7 +175,9 @@ def configure_args(self):
# following flags. This works for OpenMPI, MPICH, MVAPICH, Intel MPI,
# IBM Spectrum MPI, bullx MPI, and Cray MPI.
if self.spec.satisfies('@1.9:+hdf5^hdf5+mpi'):
config_args.append(
'CPPFLAGS=-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX')
flags['CPPFLAGS'].append('-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX')
config_args.extend(['{0}={1}'.format(var, ' '.join(val))
for var, val in flags.items()])
return config_args