From 402233ecc8caa341c58c55b6d1437867d02a7cd9 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Tue, 25 Jul 2017 15:50:42 -0500 Subject: [PATCH] transposome: new package (#4896) --- .../builtin/packages/transposome/package.py | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 var/spack/repos/builtin/packages/transposome/package.py diff --git a/var/spack/repos/builtin/packages/transposome/package.py b/var/spack/repos/builtin/packages/transposome/package.py new file mode 100644 index 0000000000..01499290cf --- /dev/null +++ b/var/spack/repos/builtin/packages/transposome/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Transposome(PerlPackage): + """A toolkit for annotation of transposable element families from + unassembled sequence reads.""" + + homepage = "https://sestaton.github.io/Transposome/" + url = "https://github.com/sestaton/Transposome/archive/v0.11.2.tar.gz" + + version('0.11.2', '157c1fc090b0aa30050d03df885dcde0') + + depends_on('blast-plus')