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sra-toolkit: new package (#5588)

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* sra-toolkit: new package

* adding description and homepage
This commit is contained in:
Audrey Thoma 2017-10-03 15:41:41 -05:00 committed by Christoph Junghans
parent 5bc81c8db2
commit 3e79872ada
1 changed files with 45 additions and 0 deletions
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var/spack/repos/builtin/packages/sra-toolkit/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class SraToolkit(Package):
"""The NCBI SRA Toolkit enables reading ("dumping") of sequencing files
from the SRA database and writing ("loading") files into the .sra
format."""
homepage = "https://trace.ncbi.nlm.nih.gov/Traces/sra"
url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-centos_linux64.tar.gz"
version('2.8.2-1', '3a2910754aea71aba5662804efff2a68')
def url_for_version(self, version):
url = 'https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/{0}/sratoolkit.{0}-centos_linux64.tar.gz'
return url.format(version)
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('example', prefix.example)
install_tree('schema', prefix.schema)