update e4s to reflect june status (#31032)

This commit is contained in:
eugeneswalker 2022-07-14 15:05:57 -07:00 committed by GitHub
parent 64b41b012c
commit 3cb6fd140c
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 192 additions and 184 deletions

View file

@ -264,9 +264,11 @@ e4s-mac-protected-build:
e4s-pr-generate:
extends: [ ".e4s", ".pr-generate"]
image: ecpe4s/ubuntu22.04-runner-x86_64:2022-07-01
e4s-protected-generate:
extends: [ ".e4s", ".protected-generate"]
image: ecpe4s/ubuntu22.04-runner-x86_64:2022-07-01
e4s-pr-build:
extends: [ ".e4s", ".pr-build" ]

View file

@ -15,23 +15,16 @@ spack:
packages:
all:
compiler:
- gcc@7.5.0
compiler: [gcc@11.2.0]
providers:
blas:
- openblas
mpi:
- mpich
target:
- x86_64
blas: [openblas]
mpi: [mpich]
target: [x86_64]
variants: +mpi
binutils:
variants: +ld +gold +headers +libiberty ~nls
version:
- 2.36.1
doxygen:
version:
- 1.8.20
cuda:
version: [11.7.0]
elfutils:
variants: +bzip2 ~nls +xz
hdf5:
@ -40,187 +33,196 @@ spack:
variants: fabrics=sockets,tcp,udp,rxm
libunwind:
variants: +pic +xz
mesa:
variants: ~llvm
mesa18:
variants: ~llvm
mpich:
variants: ~wrapperrpath
ncurses:
variants: +termlib
openblas:
variants: threads=openmp
openturns:
version: [1.18]
python:
version: [3.8.13]
trilinos:
variants: +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
variants: +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext
+ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu
+nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos
+teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
xz:
variants: +pic
definitions:
- cuda_specs:
- amrex +cuda cuda_arch=70
- caliper +cuda cuda_arch=70
- chai ~benchmarks ~tests +cuda cuda_arch=70 ^umpire ~shared
- ginkgo +cuda cuda_arch=70
- heffte +cuda cuda_arch=70
- hpx +cuda cuda_arch=70
- hypre +cuda cuda_arch=70
- kokkos +wrapper +cuda cuda_arch=70
- kokkos-kernels +cuda cuda_arch=70 ^kokkos +wrapper +cuda cuda_arch=70
- magma +cuda cuda_arch=70
- mfem +cuda cuda_arch=70
- parsec +cuda cuda_arch=70
- petsc +cuda cuda_arch=70
- raja +cuda cuda_arch=70
- slate +cuda cuda_arch=70
- slepc +cuda cuda_arch=70
- strumpack ~slate +cuda cuda_arch=70
- sundials +cuda cuda_arch=70
- superlu-dist +cuda cuda_arch=70
- tasmanian +cuda cuda_arch=70
# Trilinos: enable CUDA, Kokkos, and important Tpetra-era solver packages;
# disable Epetra; disable ETI to speed up CI; disable all other TPLs
- trilinos@13.2.0 +cuda cuda_arch=70 +wrapper +amesos2 +belos +ifpack2 +kokkos +muelu +nox +stratimikos +tpetra ~amesos ~anasazi ~aztec ~epetraext ~ifpack ~isorropia ~ml ~teko ~tempus ~zoltan ~zoltan2 ~explicit_template_instantiation ~adios2~basker~boost~chaco~complex~debug~dtk~epetraextbtf~epetraextexperimental~epetraextgraphreorderings~exodus~float~fortran~gtest~hypre~intrepid~intrepid2~ipo~mesquite~minitensor~mumps~openmp~phalanx~piro~rocm~rol~rythmos~sacado~scorec~shards~shared~shylu~stk~stokhos~strumpack~suite-sparse~superlu~superlu-dist~trilinoscouplings~x11
- umpire ~shared +cuda cuda_arch=70
- vtk-m +cuda cuda_arch=70
- zfp +cuda cuda_arch=70
#- ascent ~shared +cuda cuda_arch=70
#- axom +cuda cuda_arch=70 ^umpire ~shared
#- dealii +cuda cuda_arch=70 # gmsh
#- flecsi +cuda cuda_arch=70
#- paraview +cuda cuda_arch=70
- rocm_specs:
- kokkos +rocm amdgpu_target=gfx906
#- amrex +rocm amdgpu_target=gfx906
#- chai +rocm ~benchmarks amdgpu_target=gfx906
#- ginkgo +rocm amdgpu_target=gfx906 # needs hip<4.1
#- raja +rocm ~openmp amdgpu_target=gfx906 # blt 0.3.6 issue with rocm
#- slate +rocm amdgpu_target=gfx906
#- strumpack +rocm ~slate amdgpu_target=gfx906
#- sundials +rocm amdgpu_target=gfx906
#- tasmanian +rocm amdgpu_target=gfx906
#- umpire+rocm amdgpu_target=gfx906 # blt 0.3.6 issue with rocm
- default_specs:
- adios
- adios2
- aml
- amrex
- arborx
- archer
- argobots
- ascent
- axom
- bolt
- cabana
- caliper
- chai ~benchmarks ~tests
- conduit
- darshan-runtime
- darshan-util
- datatransferkit
- dyninst
- faodel
- flecsi@1.4.2 +external_cinch
- flit
- flux-core
- fortrilinos
- gasnet
- ginkgo
- globalarrays
- gmp
- gotcha
- gptune
- h5bench
- hdf5
- heffte +fftw
- hpctoolkit
- hpx
- hypre
- kokkos +openmp
- kokkos-kernels +openmp
- lammps
- legion
- libnrm
- libquo
- libunwind
- llvm targets=amdgpu,nvptx +clang +compiler-rt +libcxx +lld +lldb +llvm_dylib +flang ~cuda
- loki
- mercury
- metall
- mfem
- mpark-variant
- mpifileutils ~xattr
- nccmp
- nco
- ninja
- nrm
- omega-h
- openmpi
- openpmd-api
- papi
- papyrus@1.0.1
- parallel-netcdf
- parsec ~cuda
- pdt
- petsc
- phist
- plasma
- precice
- pumi
- py-jupyterhub
- py-libensemble
- py-petsc4py
- py-warpx ^warpx dims=2
- py-warpx ^warpx dims=3
- py-warpx ^warpx dims=rz
- qthreads scheduler=distrib
- raja
- rempi
- scr
- slate ~cuda
- slepc
- stc
- strumpack ~slate
- sundials
- superlu
- superlu-dist
- swig
- swig@4.0.2-fortran
- sz
- tasmanian
- tau +mpi +python
- trilinos +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
- turbine
- umap
- umpire
- unifyfs@0.9.1
- upcxx
- variorum
- veloc
- wannier90
- zfp
#- dealii
#- geopm
#- qt
#- qwt
- arch:
- '%gcc target=x86_64'
mesa:
version: [21.3.8]
specs:
# CPU
- adios
- adios2
- alquimia
- aml
- amrex
- arborx
- archer
- argobots
- ascent
- axom
- bolt
- bricks
- butterflypack
- cabana
- chai ~benchmarks ~tests
- conduit
- darshan-runtime
- darshan-util
- datatransferkit
- dyninst
- exaworks
- faodel
- flecsi
- flit
- flux-core
- fortrilinos
- gasnet
- ginkgo
- globalarrays
- gmp
- gptune
- hdf5 +fortran +hl +shared
- heffte +fftw
- hpctoolkit
- hpx networking=mpi
- hypre
- kokkos +openmp
- kokkos-kernels +openmp
- lammps
- legion
- libnrm
- libquo
- libunwind
- mercury
- metall
- mfem
- mpark-variant
- mpifileutils ~xattr
- nccmp
- nco
- netlib-scalapack
- nrm
- nvhpc
- omega-h
- openmpi
- openpmd-api
- papi
- papyrus
- parallel-netcdf
- parsec ~cuda
- pdt
- petsc
- phist
- plasma
- plumed
- precice
- pumi
- py-cinemasci
- py-jupyterhub
- py-libensemble
- py-petsc4py
- py-warpx ^warpx dims=2
- py-warpx ^warpx dims=3
- py-warpx ^warpx dims=rz
- qthreads scheduler=distrib
- raja
- scr
- slate ~cuda
- slepc
- stc
- strumpack ~slate
- sundials
- superlu
- superlu-dist
- swig
- swig@4.0.2-fortran
- sz
- tasmanian
- tau +mpi +python
- trilinos@13.0.1 +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack
+ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro
+phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko
+tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
- turbine
- umap
- umpire
- upcxx
- veloc
- vtk-m
- wannier90
- zfp
- matrix:
- - $default_specs
- - $arch
# CUDA
- adios2 +cuda cuda_arch=80
- arborx +cuda cuda_arch=80 ^kokkos@3.6.00 +wrapper
- bricks +cuda
- cabana +cuda ^kokkos@3.6.00 +wrapper +cuda_lambda +cuda cuda_arch=80
- chai ~benchmarks ~tests +cuda cuda_arch=80 ^umpire@6.0.0 ~shared
- flux-core +cuda
- ginkgo +cuda cuda_arch=80
- heffte +cuda cuda_arch=80
- hpctoolkit +cuda
- hpx +cuda cuda_arch=80
- hypre +cuda cuda_arch=80
- kokkos-kernels +cuda cuda_arch=80 ^kokkos +wrapper +cuda cuda_arch=80
- kokkos +wrapper +cuda cuda_arch=80
- magma +cuda cuda_arch=80
- mfem +cuda cuda_arch=80
- papi +cuda
- petsc +cuda cuda_arch=80
- raja +cuda cuda_arch=80
- slate +cuda cuda_arch=80
- slepc +cuda cuda_arch=80
- strumpack ~slate +cuda cuda_arch=80
- sundials +cuda cuda_arch=80
- superlu-dist +cuda cuda_arch=80
- tasmanian +cuda cuda_arch=80
- tau +mpi +cuda
- umpire ~shared +cuda cuda_arch=80
- vtk-m +cuda cuda_arch=80
- zfp +cuda cuda_arch=80
- matrix:
- - $cuda_specs
- - $arch
# ROCm
- amrex +rocm amdgpu_target=gfx90a
- arborx +rocm amdgpu_target=gfx90a
- gasnet +rocm amdgpu_target=gfx90a
- heffte +rocm amdgpu_target=gfx90a
- hpx +rocm amdgpu_target=gfx90a
- kokkos +rocm amdgpu_target=gfx90a
- magma ~cuda +rocm amdgpu_target=gfx90a
- petsc +rocm amdgpu_target=gfx90a
- slepc +rocm amdgpu_target=gfx90a ^petsc +rocm amdgpu_target=gfx90a
- strumpack ~slate +rocm amdgpu_target=gfx90a
- superlu-dist +rocm amdgpu_target=gfx90a
- tau +mpi +rocm
- upcxx +rocm amdgpu_target=gfx90a
# CPU failures
#- caliper # /usr/bin/ld: ../../libcaliper.so.2.7.0: undefined reference to `_dl_sym'
#- charliecloud # autogen.sh: 6: [[: not found
#- geopm # /usr/include/x86_64-linux-gnu/bits/string_fortified.h:95:10: error:'__builtin_strncpy' specified bound 512 equals destination size [-Werror=stringop-truncation]
#- gotcha # /usr/bin/ld: ../../libgotcha.so.2.0.2: undefined reference to `_dl_sym'
#- h5bench # commons/h5bench_util.h:196: multiple definition of `has_vol_async';
#- loki # ../include/loki/Singleton.h:158:14: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
#- paraview +qt # llvm@14
#- pruners-ninja # test/ninja_test_util.c:34: multiple definition of `a';
#- rempi # rempi_message_manager.h:53:3: error: 'string' does not name a type
#- unifyfs # gotcha: /usr/bin/ld: ../../libgotcha.so.2.0.2: undefined reference to `_dl_sym'
#- variorum # /usr/bin/ld: Intel/CMakeFiles/variorum_intel.dir/Broadwell_4F.c.o:(.bss+0x0): multiple definition of `g_platform';
# CUDA failures
#- caliper +cuda cuda_arch=80 # /usr/bin/ld: ../../libcaliper.so.2.7.0: undefined reference to `_dl_sym'
#- parsec +cuda cuda_arch=80 # parsec/mca/device/cuda/transfer.c:168: multiple definition of `parsec_CUDA_d2h_max_flows';
#- trilinos@13.2.0 +cuda cuda_arch=80 # /usr/include/c++/11/bits/std_function.h:435:145: error: parameter packs not expanded with '...':
# ROCm failures
#- chai ~benchmarks +rocm amdgpu_target=gfx90a # umpire: Target "blt_hip" INTERFACE_INCLUDE_DIRECTORIES property contains path: "/tmp/root/spack-stage/spack-stage-umpire-2022.03.1-by6rldnpdowaaoqgxkeqejwyx5uxo2sv/spack-src/HIP_CLANG_INCLUDE_PATH-NOTFOUND/.." which is prefixed in the source directory.
#- hpctoolkit +rocm # roctracer-dev: core/memory_pool.h:155:64: error: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Werror=deprecated-declarations]
#- raja ~openmp +rocm amdgpu_target=gfx90a # cmake: Could NOT find ROCPRIM (missing: ROCPRIM_INCLUDE_DIRS)
#- umpire +rocm amdgpu_target=gfx90a # Target "blt_hip" INTERFACE_INCLUDE_DIRECTORIES property contains path: "/tmp/root/spack-stage/spack-stage-umpire-2022.03.1-by6rldnpdowaaoqgxkeqejwyx5uxo2sv/spack-src/HIP_CLANG_INCLUDE_PATH-NOTFOUND/.." which is prefixed in the source directory.
mirrors: { "mirror": "s3://spack-binaries/develop/e4s" }
@ -237,10 +239,14 @@ spack:
- if [[ -r /mnt/key/spack_public_key.gpg ]]; then spack gpg trust /mnt/key/spack_public_key.gpg; fi
- spack -d ci rebuild > >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_out.txt) 2> >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_err.txt >&2)
image: { "name": "ghcr.io/spack/e4s-ubuntu-18.04:v2021-10-18", "entrypoint": [""] }
image: ecpe4s/ubuntu22.04-runner-x86_64:2022-07-01
mappings:
- match:
- hipblas
- llvm
- llvm-amdgpu
- rocblas
runner-attributes:
tags: [ "spack", "huge", "x86_64" ]
variables:
@ -402,7 +408,7 @@ spack:
KUBERNETES_CPU_REQUEST: "500m"
KUBERNETES_MEMORY_REQUEST: "500M"
- match: ['os=ubuntu18.04']
- match: ['os=ubuntu22.04']
runner-attributes:
tags: ["spack", "x86_64"]
variables:
@ -414,7 +420,7 @@ spack:
before_script:
- . "./share/spack/setup-env.sh"
- spack --version
image: { "name": "ghcr.io/spack/e4s-ubuntu-18.04:v2021-10-18", "entrypoint": [""] }
image: ecpe4s/ubuntu22.04-runner-x86_64:2022-07-01
tags: ["spack", "public", "x86_64"]
signing-job-attributes: