Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage
This commit is contained in:
citibeth
commit
358b387283
9 changed files with 132 additions and 106 deletions
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@ -52,7 +52,7 @@ def print_text_info(pkg):
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print "Safe versions: "
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if not pkg.versions:
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print("None")
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print(" None")
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else:
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pad = padder(pkg.versions, 4)
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for v in reversed(sorted(pkg.versions)):
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@ -62,7 +62,7 @@ def print_text_info(pkg):
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print
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print "Variants:"
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if not pkg.variants:
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print "None"
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print " None"
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else:
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pad = padder(pkg.variants, 4)
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@ -0,0 +1,22 @@
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# HG changeset patch
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# User Sean Farley <sean@mcs.anl.gov>
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# Date 1332269671 18000
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# Tue Mar 20 13:54:31 2012 -0500
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# Node ID b95c0c2e1d8bf8e3273f7d45e856f0c0127d998e
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# Parent 88049269953c67c3fdcc4309bf901508a875f0dc
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cmake: add gklib headers to install into include
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diff -r 88049269953c -r b95c0c2e1d8b libmetis/CMakeLists.txt
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Index: libmetis/CMakeLists.txt
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===================================================================
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--- a/libmetis/CMakeLists.txt Tue Mar 20 13:54:29 2012 -0500
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+++ b/libmetis/CMakeLists.txt Tue Mar 20 13:54:31 2012 -0500
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@@ -12,6 +12,8 @@ endif()
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if(METIS_INSTALL)
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install(TARGETS metis
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LIBRARY DESTINATION lib
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RUNTIME DESTINATION lib
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ARCHIVE DESTINATION lib)
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+ install(FILES gklib_defs.h DESTINATION include)
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+ install(FILES gklib_rename.h DESTINATION include)
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endif()
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@ -24,7 +24,7 @@
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##############################################################################
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from spack import *
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import glob
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class Metis(Package):
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"""
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@ -49,6 +49,8 @@ class Metis(Package):
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depends_on('gdb', when='+gdb')
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patch('install_gklib_defs_rename.patch')
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def install(self, spec, prefix):
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options = []
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@ -81,3 +83,10 @@ def install(self, spec, prefix):
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cmake(source_directory, *options)
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make()
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make("install")
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# install GKlib headers, which will be needed for ParMETIS
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GKlib_dist = join_path(prefix.include,'GKlib')
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mkdirp(GKlib_dist)
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fs = glob.glob(join_path(source_directory,'GKlib',"*.h"))
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for f in fs:
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install(f, GKlib_dist)
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@ -43,6 +43,13 @@ def install(self, spec, prefix):
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"--enable-dap"
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]
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# Make sure Netcdf links against Spack's curl
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# Otherwise it may pick up system's curl, which could lead to link errors:
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# /usr/lib/x86_64-linux-gnu/libcurl.so: undefined reference to `SSL_CTX_use_certificate_chain_file@OPENSSL_1.0.0'
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LIBS.append("-lcurl")
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CPPFLAGS.append("-I%s" % spec['curl'].prefix.include)
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LDFLAGS.append ("-L%s" % spec['curl'].prefix.lib)
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if '+mpi' in spec:
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config_args.append('--enable-parallel4')
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@ -1,46 +0,0 @@
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from spack import *
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import os
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class NetlibBlas(Package):
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"""Netlib reference BLAS"""
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homepage = "http://www.netlib.org/lapack/"
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url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
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version('3.5.0', 'b1d3e3e425b2e44a06760ff173104bdf')
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variant('fpic', default=False, description="Build with -fpic compiler option")
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# virtual dependency
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provides('blas')
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# Doesn't always build correctly in parallel
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parallel = False
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def patch(self):
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os.symlink('make.inc.example', 'make.inc')
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mf = FileFilter('make.inc')
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mf.filter('^FORTRAN.*', 'FORTRAN = f90')
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mf.filter('^LOADER.*', 'LOADER = f90')
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mf.filter('^CC =.*', 'CC = cc')
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if '+fpic' in self.spec:
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mf.filter('^OPTS.*=.*', 'OPTS = -O2 -frecursive -fpic')
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mf.filter('^CFLAGS =.*', 'CFLAGS = -O3 -fpic')
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def install(self, spec, prefix):
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make('blaslib')
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# Tests that blas builds correctly
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make('blas_testing')
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# No install provided
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mkdirp(prefix.lib)
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install('librefblas.a', prefix.lib)
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# Blas virtual package should provide blas.a and libblas.a
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with working_dir(prefix.lib):
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symlink('librefblas.a', 'blas.a')
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symlink('librefblas.a', 'libblas.a')
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@ -1,13 +1,12 @@
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from spack import *
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class NetlibLapack(Package):
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"""
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LAPACK version 3.X is a comprehensive FORTRAN library that does
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linear algebra operations including matrix inversions, least
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squared solutions to linear sets of equations, eigenvector
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analysis, singular value decomposition, etc. It is a very
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comprehensive and reputable package that has found extensive
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use in the scientific community.
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LAPACK version 3.X is a comprehensive FORTRAN library that does linear algebra operations including matrix
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inversions, least squared solutions to linear sets of equations, eigenvector analysis, singular value
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decomposition, etc. It is a very comprehensive and reputable package that has found extensive use in the
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scientific community.
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"""
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homepage = "http://www.netlib.org/lapack/"
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url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
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@ -19,41 +18,34 @@ class NetlibLapack(Package):
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version('3.4.0', '02d5706ec03ba885fc246e5fa10d8c70')
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version('3.3.1', 'd0d533ec9a5b74933c2a1e84eedc58b4')
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variant('shared', default=False, description="Build shared library version")
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variant('fpic', default=False, description="Build with -fpic compiler option")
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variant('debug', default=False, description='Activates the Debug build type')
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variant('shared', default=True, description="Build shared library version")
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variant('external-blas', default=False, description='Build lapack with an external blas')
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variant('lapacke', default=True, description='Activates the build of the LAPACKE C interface')
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# virtual dependency
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provides('blas', when='~external-blas')
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provides('lapack')
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# blas is a virtual dependency.
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depends_on('blas')
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depends_on('cmake')
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# Doesn't always build correctly in parallel
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parallel = False
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@when('^netlib-blas')
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def get_blas_libs(self):
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blas = self.spec['netlib-blas']
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return [join_path(blas.prefix.lib, 'blas.a')]
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@when('^atlas')
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def get_blas_libs(self):
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blas = self.spec['atlas']
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return [join_path(blas.prefix.lib, l)
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for l in ('libf77blas.a', 'libatlas.a')]
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depends_on('blas', when='+external-blas')
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def install(self, spec, prefix):
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blas_libs = ";".join(self.get_blas_libs())
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cmake_args = [".", '-DBLAS_LIBRARIES=' + blas_libs]
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cmake_args = ['-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF'),
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'-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'),
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'-DLAPACKE:BOOL=%s' % ('ON' if '+lapacke' in spec else 'OFF')]
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if '+external-blas' in spec:
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# TODO : the mechanism to specify the library should be more general,
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# TODO : but this allows to have an hook to an external blas
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cmake_args.extend([
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'-DUSE_OPTIMIZED_BLAS:BOOL=ON',
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'-DBLAS_LIBRARIES:PATH=%s' % join_path(spec['blas'].prefix.lib, 'libblas.a')
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])
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if '+shared' in spec:
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cmake_args.append('-DBUILD_SHARED_LIBS=ON')
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if '+fpic' in spec:
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cmake_args.append('-DCMAKE_POSITION_INDEPENDENT_CODE=ON')
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cmake_args.extend(std_cmake_args)
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cmake_args += std_cmake_args
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cmake(*cmake_args)
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with working_dir('spack-build', create=True):
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cmake('..', *cmake_args)
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make()
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make("install")
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@ -1,13 +1,71 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index ca945dd..1bf94e9 100644
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index ca945dd..aff8b5f 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -23,7 +23,7 @@ else()
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set(ParMETIS_LIBRARY_TYPE STATIC)
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endif()
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-include(${GKLIB_PATH}/GKlibSystem.cmake)
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+include_directories(${GKLIB_PATH})
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# List of paths that the compiler will search for header files.
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# i.e., the -I equivalent
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@@ -33,7 +33,7 @@ include_directories(${GKLIB_PATH})
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include_directories(${METIS_PATH}/include)
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# List of directories that cmake will look for CMakeLists.txt
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-add_subdirectory(${METIS_PATH}/libmetis ${CMAKE_BINARY_DIR}/libmetis)
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+#add_subdirectory(${METIS_PATH}/libmetis ${CMAKE_BINARY_DIR}/libmetis)
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+find_library(METIS_LIBRARY metis PATHS ${METIS_PATH}/lib)
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add_subdirectory(include)
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add_subdirectory(libparmetis)
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add_subdirectory(programs)
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diff --git a/libparmetis/CMakeLists.txt b/libparmetis/CMakeLists.txt
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index 9cfc8a7..e0c4de7 100644
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--- a/libparmetis/CMakeLists.txt
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+++ b/libparmetis/CMakeLists.txt
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@@ -5,7 +5,10 @@ file(GLOB parmetis_sources *.c)
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# Create libparmetis
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add_library(parmetis ${ParMETIS_LIBRARY_TYPE} ${parmetis_sources})
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# Link with metis and MPI libraries.
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-target_link_libraries(parmetis metis ${MPI_LIBRARIES})
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+target_link_libraries(parmetis ${METIS_LIBRARY} ${MPI_LIBRARIES})
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+if(UNIX)
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+ target_link_libraries(parmetis m)
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+endif()
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set_target_properties(parmetis PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
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install(TARGETS parmetis
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diff --git a/libparmetis/parmetislib.h b/libparmetis/parmetislib.h
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index c1daeeb..07511f6 100644
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--- a/libparmetis/parmetislib.h
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+++ b/libparmetis/parmetislib.h
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@@ -20,13 +20,12 @@
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#include <parmetis.h>
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-#include "../metis/libmetis/gklib_defs.h"
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+#include <gklib_defs.h>
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-#include <mpi.h>
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+#include <mpi.h>
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#include <rename.h>
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#include <defs.h>
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#include <struct.h>
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#include <macros.h>
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#include <proto.h>
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-
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diff --git a/programs/parmetisbin.h b/programs/parmetisbin.h
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index e26cd2d..d156480 100644
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--- a/programs/parmetisbin.h
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+++ b/programs/parmetisbin.h
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@@ -19,7 +19,7 @@
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#include <GKlib.h>
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#include <parmetis.h>
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-#include "../metis/libmetis/gklib_defs.h"
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+#include <gklib_defs.h>
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#include "../libparmetis/rename.h"
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#include "../libparmetis/defs.h"
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#include "../libparmetis/struct.h"
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@ -1,14 +0,0 @@
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diff --git a/libparmetis/CMakeLists.txt b/libparmetis/CMakeLists.txt
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index 9cfc8a7..dfc0125 100644
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--- a/libparmetis/CMakeLists.txt
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+++ b/libparmetis/CMakeLists.txt
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@@ -5,7 +5,7 @@ file(GLOB parmetis_sources *.c)
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# Create libparmetis
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add_library(parmetis ${ParMETIS_LIBRARY_TYPE} ${parmetis_sources})
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# Link with metis and MPI libraries.
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-target_link_libraries(parmetis metis ${MPI_LIBRARIES})
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+target_link_libraries(parmetis metis ${MPI_LIBRARIES} "-lm")
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set_target_properties(parmetis PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
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install(TARGETS parmetis
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@ -52,8 +52,6 @@ class Parmetis(Package):
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# https://bitbucket.org/petsc/pkg-parmetis/commits/82409d68aa1d6cbc70740d0f35024aae17f7d5cb/raw/
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patch('pkg-parmetis-82409d68aa1d6cbc70740d0f35024aae17f7d5cb.patch')
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patch('link-to-lm.patch')
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depends_on('gdb', when='+gdb')
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def install(self, spec, prefix):
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@ -66,7 +64,7 @@ def install(self, spec, prefix):
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# FIXME : Once a contract is defined, MPI compilers should be retrieved indirectly via spec['mpi'] in case
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# FIXME : they use a non-standard name
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options.extend(['-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=metis_source), # still need headers from METIS source, and they are not installed with METIS. shame...
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options.extend(['-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=spec['metis'].prefix.include),
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'-DMETIS_PATH:PATH={metis_source}'.format(metis_source=spec['metis'].prefix),
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'-DCMAKE_C_COMPILER:STRING=mpicc',
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'-DCMAKE_CXX_COMPILER:STRING=mpicxx'])
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