From 3566966d4769dff87eca778a06c6a37e8e080e1a Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Tue, 11 Jul 2017 07:49:00 -0500 Subject: [PATCH] genometools: new package (#4706) * genometools: new package * genometools: fixing perl dependency type --- .../builtin/packages/genometools/package.py | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 var/spack/repos/builtin/packages/genometools/package.py diff --git a/var/spack/repos/builtin/packages/genometools/package.py b/var/spack/repos/builtin/packages/genometools/package.py new file mode 100644 index 0000000000..afb45bdd84 --- /dev/null +++ b/var/spack/repos/builtin/packages/genometools/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################# +from spack import * + + +class Genometools(MakefilePackage): + """genometools is a free collection of bioinformatics tools (in the realm + of genome informatics) combined into a single binary named gt.""" + + homepage = "http://genometools.org/" + url = "http://genometools.org/pub/genometools-1.5.9.tar.gz" + + version('1.5.9', 'e400d69092f9f13db09b33f9dea39d2e') + + depends_on('perl', type=('build', 'run')) + depends_on('cairo') + depends_on('pango') + + # build fails with gcc 7" + conflicts('%gcc@7.1.0:') + + def install(self, spec, prefix): + make('install', 'prefix=%s' % prefix)