From 2913aa8d09d69c882d5307412a9d79bc7d3f3d12 Mon Sep 17 00:00:00 2001 From: Glenn Johnson Date: Sat, 30 Jul 2016 18:14:02 -0500 Subject: [PATCH] New package - r-ggmap and dependencies Spatial visualization with ggplot2 --- .../builtin/packages/r-geosphere/package.py | 45 +++++++++++++++ .../repos/builtin/packages/r-ggmap/package.py | 57 +++++++++++++++++++ .../repos/builtin/packages/r-jpeg/package.py | 45 +++++++++++++++ .../builtin/packages/r-mapproj/package.py | 43 ++++++++++++++ .../repos/builtin/packages/r-proto/package.py | 42 ++++++++++++++ .../builtin/packages/r-rgooglemaps/package.py | 47 +++++++++++++++ .../repos/builtin/packages/r-rjson/package.py | 41 +++++++++++++ .../builtin/packages/r-rjsonio/package.py | 55 ++++++++++++++++++ 8 files changed, 375 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-geosphere/package.py create mode 100644 var/spack/repos/builtin/packages/r-ggmap/package.py create mode 100644 var/spack/repos/builtin/packages/r-jpeg/package.py create mode 100644 var/spack/repos/builtin/packages/r-mapproj/package.py create mode 100644 var/spack/repos/builtin/packages/r-proto/package.py create mode 100644 var/spack/repos/builtin/packages/r-rgooglemaps/package.py create mode 100644 var/spack/repos/builtin/packages/r-rjson/package.py create mode 100644 var/spack/repos/builtin/packages/r-rjsonio/package.py diff --git a/var/spack/repos/builtin/packages/r-geosphere/package.py b/var/spack/repos/builtin/packages/r-geosphere/package.py new file mode 100644 index 0000000000..21ae07fd41 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-geosphere/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGeosphere(Package): + """Spherical trigonometry for geographic applications. That is, compute + distances and related measures for angular (longitude/latitude) + locations.""" + + homepage = "https://cran.r-project.org/package=geosphere" + url = "https://cran.r-project.org/src/contrib/geosphere_1.5-5.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/geosphere" + + version('1.5-5', '28efb7a8e266c7f076cdbcf642455f3e') + + extends('R') + + depends_on('r-sp', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-ggmap/package.py b/var/spack/repos/builtin/packages/r-ggmap/package.py new file mode 100644 index 0000000000..2dfca19b51 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ggmap/package.py @@ -0,0 +1,57 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGgmap(Package): + """A collection of functions to visualize spatial data and models on top of + static maps from various online sources (e.g Google Maps and Stamen Maps). + It includes tools common to those tasks, including functions for + geolocation and routing.""" + + homepage = "https://github.com/dkahle/ggmap" + url = "https://cran.r-project.org/src/contrib/ggmap_2.6.1.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/ggmap" + + version('2.6.1', '25ad414a3a1c6d59a227a9f22601211a') + + extends('R') + + depends_on('r-ggplot2', type=nolink) + depends_on('r-proto', type=nolink) + depends_on('r-rgooglemaps', type=nolink) + depends_on('r-png', type=nolink) + depends_on('r-plyr', type=nolink) + depends_on('r-reshape2', type=nolink) + depends_on('r-rjson', type=nolink) + depends_on('r-mapproj', type=nolink) + depends_on('r-jpeg', type=nolink) + depends_on('r-geosphere', type=nolink) + depends_on('r-digest', type=nolink) + depends_on('r-scales', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-jpeg/package.py b/var/spack/repos/builtin/packages/r-jpeg/package.py new file mode 100644 index 0000000000..ef940720f8 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-jpeg/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RJpeg(Package): + """This package provides an easy and simple way to read, write and display + bitmap images stored in the JPEG format. It can read and write both files + and in-memory raw vectors.""" + + homepage = "http://www.rforge.net/jpeg/" + url = "https://cran.r-project.org/src/contrib/jpeg_0.1-8.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/jpeg" + + version('0.1-8', '696007451d14395b1ed1d0e9af667a57') + + extends('R') + + depends_on('jpeg') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-mapproj/package.py b/var/spack/repos/builtin/packages/r-mapproj/package.py new file mode 100644 index 0000000000..0f8bbe199b --- /dev/null +++ b/var/spack/repos/builtin/packages/r-mapproj/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RMapproj(Package): + """Converts latitude/longitude into projected coordinates.""" + + homepage = "https://cran.r-project.org/package=mapproj" + url = "https://cran.r-project.org/src/contrib/mapproj_1.2-4.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/mapproj" + + version('1.2-4', '10e22bde1c790e1540672f15ddcaee71') + + extends('R') + + depends_on('r-maps', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-proto/package.py b/var/spack/repos/builtin/packages/r-proto/package.py new file mode 100644 index 0000000000..07ace3ad29 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-proto/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RProto(Package): + """An object oriented system using object-based, also called + prototype-based, rather than class-based object oriented ideas.""" + + homepage = "http://r-proto.googlecode.com/" + url = "https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/proto" + + version('0.3-10', 'd5523943a5be6ca2f0ab557c900f8212') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-rgooglemaps/package.py b/var/spack/repos/builtin/packages/r-rgooglemaps/package.py new file mode 100644 index 0000000000..0d28b68b94 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-rgooglemaps/package.py @@ -0,0 +1,47 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RRgooglemaps(Package): + """This package serves two purposes: (i) Provide a comfortable R interface + to query the Google server for static maps, and (ii) Use the map as a + background image to overlay plots within R. This requires proper coordinate + scaling.""" + + homepage = "https://cran.r-project.org/package=RgoogleMaps" + url = "https://cran.r-project.org/src/contrib/RgoogleMaps_1.2.0.7.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/RgoogleMaps" + + version('1.2.0.7', '2e1df804f0331b4122d841105f0c7ea5') + + extends('R') + + depends_on('r-png', type=nolink) + depends_on('r-rjsonio', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-rjson/package.py b/var/spack/repos/builtin/packages/r-rjson/package.py new file mode 100644 index 0000000000..94ca45f485 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-rjson/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RRjson(Package): + """Converts R object into JSON objects and vice-versa.""" + + homepage = "https://cran.r-project.org/package=rjson" + url = "https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/rjson" + + version('0.2.15', '87d0e29bc179c6aeaf312b138089f8e9') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-rjsonio/package.py b/var/spack/repos/builtin/packages/r-rjsonio/package.py new file mode 100644 index 0000000000..b56dfbe21d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-rjsonio/package.py @@ -0,0 +1,55 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RRjsonio(Package): + """This is a package that allows conversion to and from data in Javascript + object notation (JSON) format. This allows R objects to be inserted into + Javascript/ECMAScript/ActionScript code and allows R programmers to read + and convert JSON content to R objects. This is an alternative to rjson + package. Originally, that was too slow for converting large R objects to + JSON and was not extensible. rjson's performance is now similar to this + package, and perhaps slightly faster in some cases. This package uses + methods and is readily extensible by defining methods for different + classes, vectorized operations, and C code and callbacks to R functions for + deserializing JSON objects to R. The two packages intentionally share the + same basic interface. This package (RJSONIO) has many additional options to + allow customizing the generation and processing of JSON content. This + package uses libjson rather than implementing yet another JSON parser. The + aim is to support other general projects by building on their work, + providing feedback and benefit from their ongoing development.""" + + homepage = "https://cran.r-project.org/package=RJSONIO" + url = "https://cran.r-project.org/src/contrib/RJSONIO_1.3-0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/RJSONIO" + + version('1.3-0', '72c395622ba8d1435ec43849fd32c830') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path)