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New package: py-kneaddata (#43310)

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Gavin John 2024-03-22 19:20:52 -05:00 committed by GitHub
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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyKneaddata(PythonPackage):
"""
Quality control tool on metagenomic and metatranscriptomic sequencing data,
especially data from microbiome experiments
"""
homepage = "https://github.com/biobakery/kneaddata"
pypi = "kneaddata/kneaddata-0.12.0.tar.gz"
version("0.12.0", sha256="b211bf973ea50cc89dd5935761ca3b101d422cfb62b215aae08f5ed92a624a58")
maintainers("Pandapip1")
depends_on("py-setuptools", type="build")
depends_on("trimmomatic@0.33", type=("build", "run"))
depends_on("bowtie2@2.2:", type=("build", "run"))
depends_on("python", type=("build", "run"))
depends_on("java", type=("build", "run"))
variant("bam", default=True, description="Enable support for input files in BAM format")
depends_on("samtools", when="+bam", type=("build", "run"))
variant("trf", default=True, description="Enable support for Tandem Repeats Finder")
depends_on("trf", when="+trf", type=("build", "run"))
variant("fastqc", default=True, description="Enable support for FastQC")
depends_on("fastqc", when="+fastqc", type=("build", "run"))