diff --git a/var/spack/repos/builtin/packages/cellranger/package.py b/var/spack/repos/builtin/packages/cellranger/package.py new file mode 100644 index 0000000000..31dded75e8 --- /dev/null +++ b/var/spack/repos/builtin/packages/cellranger/package.py @@ -0,0 +1,38 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +import os + +from spack.package import * + + +class Cellranger(Package): + """Cellranger is a set of analysis pipelines that process Chromium single cell data to + align reads, generate feature-barcode matrices, perform clustering and other secondary + analysis, and more. + + This package requires the user to accept a license and to download the tarball manually. + Once downloaded, the file should be placed within a manual mirror or within the current + directory. For instructions on making a manual mirror, see + https://spack.readthedocs.io/en/latest/mirrors.html""" + + homepage = "https://www.10xgenomics.com/support/software/cell-ranger/latest" + manual_download = True + license_url = "support.10xgenomics.com/license" + + version("7.2.0", sha256="b092bd4e3ab585ad051a231fbdd8f3f0f5cbcd10f657eeab86bec98cd594502c") + version("7.1.0", sha256="5c4f9b142e3c30ad10ae15d25868df2b4fd05bdb3bbd47da0c83a7cc649b577e") + + # cellranger is distributed as precompiled binaries that are not compatible with + # processors without the avx instruction set ... + conflicts("target=:k10") # last AMD processor not to support avx + conflicts("target=:westmere") # last Intel processor not to support avx + conflicts("target=:x86_64_v2") # last generic architecture not to support avx + + def url_for_version(self, version): + return "file://{0}/cellranger-{1}.tar.gz".format(os.getcwd(), version) + + def install(self, spec, prefix): + install_tree(".", prefix)