patches for openmpi 1.6.5
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Adam Moody
Todd Gamblin
parent
9d01df9e8a
commit
2588e023ec
3 changed files with 191 additions and 0 deletions
29
lib/spack/spack/packages/openmpi/__init__.py
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lib/spack/spack/packages/openmpi/__init__.py
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from spack import *
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class Openmpi(Package):
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"""Open MPI is a project combining technologies and resources from
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several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI)
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in order to build the best MPI library available. A completely
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new MPI-2 compliant implementation, Open MPI offers advantages
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for system and software vendors, application developers and
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computer science researchers.
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"""
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homepage = "http://www.open-mpi.org"
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url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2"
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versions = { '1.6.5' : '03aed2a4aa4d0b27196962a2a65fc475', }
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patch('ad_lustre_rwcontig_open_source.patch')
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patch('llnl-platforms.patch')
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def install(self, spec, prefix):
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configure("--prefix=%s" % prefix,
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"--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas")
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# TODO: implement variants next, so we can have LLNL and LANL options.
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# use above for LANL builds, but for LLNL builds, we need this
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# "--with-platform=contrib/platform/llnl/optimized")
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make()
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make("install")
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@ -0,0 +1,11 @@
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--- a/ompi/mca/io/romio/romio/adio/ad_lustre/ad_lustre_rwcontig.c 2013-12-10 12:05:44.806417000 -0800
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+++ b/ompi/mca/io/romio/romio/adio/ad_lustre/ad_lustre_rwcontig.c 2013-12-10 11:53:03.295622000 -0800
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@@ -8,7 +8,7 @@
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* Copyright (C) 2008 Sun Microsystems, Lustre group
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*/
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-#define _XOPEN_SOURCE 600
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+//#define _XOPEN_SOURCE 600
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#include <stdlib.h>
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#include <malloc.h>
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#include "ad_lustre.h"
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151
lib/spack/spack/packages/openmpi/llnl-platforms.patch
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lib/spack/spack/packages/openmpi/llnl-platforms.patch
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diff -Nuar openmpi-1.6.5.orig/contrib/platform/llnl/optimized openmpi-1.6.5.llnl/contrib/platform/llnl/optimized
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--- openmpi-1.6.5.orig/contrib/platform/llnl/optimized 1969-12-31 16:00:00.000000000 -0800
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+++ openmpi-1.6.5.llnl/contrib/platform/llnl/optimized 2013-08-08 23:47:12.704029000 -0700
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@@ -0,0 +1,29 @@
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+enable_dlopen=no
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+enable_mem_debug=no
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+enable_mem_profile=no
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+enable_debug_symbols=no
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+enable_binaries=yes
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+enable_heterogeneous=no
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+enable_debug=no
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+enable_shared=yes
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+enable_static=yes
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+enable_memchecker=no
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+enable_ipv6=no
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+enable_mpi_f77=yes
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+enable_mpi_f90=yes
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+enable_mpi_cxx=yes
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+enable_mpi_cxx_seek=yes
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+enable_cxx_exceptions=no
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+enable_ft_thread=no
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+enable_per_user_config_files=no
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+enable_mca_no_build=carto,crs,filem,routed-linear,snapc,pml-dr,pml-crcp2,pml-crcpw,pml-v,pml-example,crcp,btl-tcp
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+enable_contrib_no_build=libnbc,vt
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+with_slurm=yes
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+with_pmi=yes
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+with_tm=no
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+with_openib=yes
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+with_psm=yes
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+with_devel_headers=yes
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+with_io_romio_flags=--with-file-system=ufs+nfs+lustre
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+with_memory_manager=ptmalloc2
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+with_valgrind=no
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diff -Nuar openmpi-1.6.5.orig/contrib/platform/llnl/optimized.conf openmpi-1.6.5.llnl/contrib/platform/llnl/optimized.conf
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--- openmpi-1.6.5.orig/contrib/platform/llnl/optimized.conf 1969-12-31 16:00:00.000000000 -0800
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+++ openmpi-1.6.5.llnl/contrib/platform/llnl/optimized.conf 2013-08-08 23:43:52.907553000 -0700
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@@ -0,0 +1,114 @@
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+#
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+# Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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+# University Research and Technology
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+# Corporation. All rights reserved.
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+# Copyright (c) 2004-2005 The University of Tennessee and The University
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+# of Tennessee Research Foundation. All rights
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+# reserved.
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+# Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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+# University of Stuttgart. All rights reserved.
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+# Copyright (c) 2004-2005 The Regents of the University of California.
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+# All rights reserved.
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+# Copyright (c) 2006 Cisco Systems, Inc. All rights reserved.
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+# Copyright (c) 2011 Los Alamos National Security, LLC.
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+# All rights reserved.
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+# $COPYRIGHT$
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+#
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+# Additional copyrights may follow
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+#
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+# $HEADER$
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+#
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+
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+# This is the default system-wide MCA parameters defaults file.
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+# Specifically, the MCA parameter "mca_param_files" defaults to a
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+# value of
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+# "$HOME/.openmpi/mca-params.conf:$sysconf/openmpi-mca-params.conf"
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+# (this file is the latter of the two). So if the default value of
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+# mca_param_files is not changed, this file is used to set system-wide
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+# MCA parameters. This file can therefore be used to set system-wide
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+# default MCA parameters for all users. Of course, users can override
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+# these values if they want, but this file is an excellent location
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+# for setting system-specific MCA parameters for those users who don't
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+# know / care enough to investigate the proper values for them.
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+
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+# Note that this file is only applicable where it is visible (in a
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+# filesystem sense). Specifically, MPI processes each read this file
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+# during their startup to determine what default values for MCA
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+# parameters should be used. mpirun does not bundle up the values in
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+# this file from the node where it was run and send them to all nodes;
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+# the default value decisions are effectively distributed. Hence,
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+# these values are only applicable on nodes that "see" this file. If
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+# $sysconf is a directory on a local disk, it is likely that changes
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+# to this file will need to be propagated to other nodes. If $sysconf
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+# is a directory that is shared via a networked filesystem, changes to
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+# this file will be visible to all nodes that share this $sysconf.
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+
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+# The format is straightforward: one per line, mca_param_name =
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+# rvalue. Quoting is ignored (so if you use quotes or escape
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+# characters, they'll be included as part of the value). For example:
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+
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+# Disable run-time MPI parameter checking
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+# mpi_param_check = 0
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+
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+# Note that the value "~/" will be expanded to the current user's home
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+# directory. For example:
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+
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+# Change component loading path
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+# component_path = /usr/local/lib/openmpi:~/my_openmpi_components
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+
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+# See "ompi_info --param all all" for a full listing of Open MPI MCA
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+# parameters available and their default values.
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+#
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+
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+# Basic behavior to smooth startup
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+mca_component_show_load_errors = 0
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+orte_abort_timeout = 10
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+opal_set_max_sys_limits = 1
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+orte_report_launch_progress = 1
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+
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+# Define timeout for daemons to report back during launch
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+orte_startup_timeout = 10000
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+
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+## Protect the shared file systems
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+orte_no_session_dirs = /p,/usr/local,/usr/global,/nfs/tmp1,/nfs/tmp2
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+orte_tmpdir_base = /tmp
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+
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+## Require an allocation to run - protects the frontend
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+## from inadvertent job executions
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+orte_allocation_required = 1
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+
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+## MPI behavior
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+## Do NOT specify mpi_leave_pinned so system
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+## can figure out for itself whether or not
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+## it is supported and usable
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+orte_notifier = syslog
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+
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+## Add the interface for out-of-band communication
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+## and set it up
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+oob_tcp_if_include=ib0
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+oob_tcp_peer_retries = 1000
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+oob_tcp_disable_family = IPv6
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+oob_tcp_listen_mode = listen_thread
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+oob_tcp_sndbuf = 32768
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+oob_tcp_rcvbuf = 32768
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+
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+## Define the MPI interconnects
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+btl = sm,openib,self
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+
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+## We are using the PSM MTL by default
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+## There can only be one!
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+pml = cm
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+
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+## Setup OpenIB - just in case
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+btl_openib_want_fork_support = 0
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+btl_openib_cpc_include = oob
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+btl_openib_receive_queues = S,4096,1024:S,12288,512:S,65536,512
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+
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+## Enable cpu affinity
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+opal_paffinity_alone = 1
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+
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+## Setup MPI options
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+mpi_show_handle_leaks = 0
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+mpi_warn_on_fork = 1
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+mpi_abort_print_stack = 0
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+
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