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sra-toolkit: new version and preserve symlinks (#9525)

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Before this, the same files were copied 3 times
This commit is contained in:
Ricardo Silva 2018-10-15 20:09:00 +02:00 committed by Peter Scheibel
parent 3a2088b4f7
commit 24865fccdc
1 changed files with 3 additions and 2 deletions
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var/spack/repos/builtin/packages/sra-toolkit/package.py
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@ -33,13 +33,14 @@ class SraToolkit(Package):
homepage = "https://trace.ncbi.nlm.nih.gov/Traces/sra" homepage = "https://trace.ncbi.nlm.nih.gov/Traces/sra"
url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-centos_linux64.tar.gz" url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-centos_linux64.tar.gz"
version('2.8.2-1', '3a2910754aea71aba5662804efff2a68') version('2.9.2', sha256='17dbe13aa1ed7955d31e1e76e8b62786e80a77e9ed9d396631162dc3ad8b716d')
version('2.8.2-1', sha256='b053061aae7c6d00162fe0f514be4128a60365b4b2b5b36e7f4798b348b55cf5')
def url_for_version(self, version): def url_for_version(self, version):
url = 'https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/{0}/sratoolkit.{0}-centos_linux64.tar.gz' url = 'https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/{0}/sratoolkit.{0}-centos_linux64.tar.gz'
return url.format(version) return url.format(version)
def install(self, spec, prefix): def install(self, spec, prefix):
install_tree('bin', prefix.bin) install_tree('bin', prefix.bin, symlinks=True)
install_tree('example', prefix.example) install_tree('example', prefix.example)
install_tree('schema', prefix.schema) install_tree('schema', prefix.schema)