diff --git a/var/spack/repos/builtin/packages/gdal/package.py b/var/spack/repos/builtin/packages/gdal/package.py index 3a22739a81..d303d26f3b 100644 --- a/var/spack/repos/builtin/packages/gdal/package.py +++ b/var/spack/repos/builtin/packages/gdal/package.py @@ -27,73 +27,385 @@ class Gdal(AutotoolsPackage): - """GDAL is a translator library for raster and vector geospatial - data formats that is released under an X/MIT style Open Source - license by the Open Source Geospatial Foundation. As a library, - it presents a single raster abstract data model and vector - abstract data model to the calling application for all supported - formats. It also comes with a variety of useful command line - utilities for data translation and processing. + """GDAL (Geospatial Data Abstraction Library) is a translator library for + raster and vector geospatial data formats that is released under an X/MIT + style Open Source license by the Open Source Geospatial Foundation. As a + library, it presents a single raster abstract data model and vector + abstract data model to the calling application for all supported formats. + It also comes with a variety of useful command line utilities for data + translation and processing. """ homepage = "http://www.gdal.org/" - url = "http://download.osgeo.org/gdal/2.1.2/gdal-2.1.2.tar.xz" + url = "http://download.osgeo.org/gdal/2.3.0/gdal-2.3.0.tar.xz" list_url = "http://download.osgeo.org/gdal/" list_depth = 1 + version('2.3.0', '2fe9d64fcd9dc37645940df020d3e200') version('2.1.2', 'ae85b78888514c75e813d658cac9478e') version('2.0.2', '940208e737c87d31a90eaae43d0efd65') + variant('libtool', default=True, description='Use libtool to build the library') + variant('libz', default=True, description='Include libz support') + variant('libiconv', default=False, description='Include libiconv support') + variant('liblzma', default=True, description='Include liblzma support') + variant('zstd', default=False, description='Include zstd support') + variant('pg', default=False, description='Include PostgreSQL support') + variant('cfitsio', default=False, description='Include FITS support') + variant('png', default=False, description='Include PNG support') + variant('jpeg', default=True, description='Include JPEG support') + variant('gif', default=False, description='Include GIF support') + variant('sosi', default=False, description='Include SOSI support') + variant('hdf4', default=False, description='Include HDF4 support') + variant('hdf5', default=False, description='Include HDF5 support') + variant('kea', default=False, description='Include kealib') + variant('netcdf', default=False, description='Include netCDF support') + variant('jasper', default=False, description='Include JPEG-2000 support via JasPer library') + variant('openjpeg', default=False, description='Include JPEG-2000 support via OpenJPEG 2.x library') + variant('xerces', default=False, description='Use Xerces-C++ parser') + variant('expat', default=False, description='Use Expat XML parser') + variant('odbc', default=False, description='Include ODBC support') + variant('curl', default=False, description='Include curl') + variant('xml2', default=False, description='Include libxml2') + variant('sqlite3', default=False, description='Use SQLite 3 library') + variant('pcre', default=False, description='Include libpcre support') + variant('geos', default=False, description='Include GEOS support') + variant('qhull', default=False, description='Include QHull support') + variant('opencl', default=False, description='Include OpenCL (GPU) support') + variant('poppler', default=False, description='Include poppler (for PDF) support') + variant('proj', default=True, description='Compile with PROJ.x') + variant('perl', default=False, description='Enable perl bindings') + variant('python', default=False, description='Enable python bindings') + variant('java', default=False, description='Include Java support') + variant('armadillo', default=False, description='Include Armadillo support for faster TPS transform computation') + variant('cryptopp', default=False, description='Include cryptopp support') + variant('crypto', default=False, description='Include crypto (from openssl) support') + + extends('perl', when='+perl') extends('python', when='+python') - variant('hdf5', default=False, description='Enable HDF5 support') - variant('hdf', default=False, description='Enable HDF4 support') - variant('openjpeg', default=False, description='Enable JPEG2000 support') - variant('geos', default=False, description='Enable GEOS support') - variant('kea', default=False, description='Enable KEA support') - variant('netcdf', default=False, description='Enable NetCDF support') - variant('python', default=False, description='Enable Python support') + # GDAL depends on GNUmake on Unix platforms. + # https://trac.osgeo.org/gdal/wiki/BuildingOnUnix + depends_on('gmake', type='build') + depends_on('pkg-config@0.25:', type='build') - depends_on('swig', when='+python') - depends_on("hdf5", when='+hdf5') - depends_on("hdf", when='+hdf') - depends_on("openjpeg", when='+openjpeg') - depends_on("geos", when='+geos') - depends_on("kealib", when='+kea') - depends_on("netcdf", when='+netcdf') - depends_on("libtiff") - depends_on("libpng") - depends_on("zlib") - depends_on("proj") - depends_on("py-numpy", type=('build', 'run')) + # Required dependencies + depends_on('libtiff@3.6.0:') # 3.9.0+ needed to pass testsuite + depends_on('libgeotiff@1.2.1:') + depends_on('json-c') - parallel = False + # Optional dependencies + depends_on('libtool', type='build', when='+libtool') + depends_on('zlib', when='+libz') + depends_on('libiconv', when='+libiconv') + depends_on('xz', when='+liblzma') + depends_on('zstd', when='+zstd') + depends_on('postgresql', when='+pg') + depends_on('cfitsio', when='+cfitsio') + depends_on('libpng', when='+png') + depends_on('jpeg', when='+jpeg') + depends_on('giflib', when='+gif') + depends_on('fyba', when='+sosi') + depends_on('hdf', when='+hdf4') + depends_on('hdf5', when='+hdf5') + depends_on('kealib', when='+kea') + depends_on('netcdf', when='+netcdf') + depends_on('jasper@1.900.1', patches=patch('uuid.patch'), when='+jasper') + depends_on('openjpeg', when='+openjpeg') + depends_on('xerces-c', when='+xerces') + depends_on('expat', when='+expat') + depends_on('unixodbc', when='+odbc') + depends_on('curl@7.10.8:', when='+curl') + depends_on('libxml2', when='+xml2') + depends_on('sqlite@3:', when='+sqlite3') + depends_on('pcre', when='+pcre') + depends_on('geos', when='+geos') + depends_on('qhull', when='+qhull') + depends_on('opencl', when='+opencl') + depends_on('poppler', when='+poppler') + depends_on('proj', when='+proj') + depends_on('perl', type=('build', 'run'), when='+perl') + depends_on('python', type=('build', 'run'), when='+python') + depends_on('java', type=('build', 'run'), when='+java') + depends_on('armadillo', when='+armadillo') + depends_on('cryptopp', when='+cryptopp') + depends_on('openssl', when='+crypto') + # https://trac.osgeo.org/gdal/wiki/SWIG + depends_on('swig', type='build', when='+python') + depends_on('swig', type='build', when='+perl') + + # https://trac.osgeo.org/gdal/wiki/SupportedCompilers + msg = 'GDAL requires C++11 support' + conflicts('%gcc@:4.8.0', msg=msg) + conflicts('%clang@:3.2', msg=msg) + conflicts('%intel@:12', msg=msg) + conflicts('%xl@:13.0', msg=msg) + conflicts('%xl_r@:13.0', msg=msg) + + # https://trac.osgeo.org/gdal/wiki/BuildHints def configure_args(self): spec = self.spec - args = [] - args.append("--with-liblzma=yes") - args.append("--with-zlib=%s" % spec['zlib'].prefix) - args.append("--without-libtool") + # Required dependencies + args = [ + # https://trac.osgeo.org/gdal/wiki/TIFF + '--with-libtiff={0}'.format(spec['libtiff'].prefix), + '--with-geotiff={0}'.format(spec['libgeotiff'].prefix), + '--with-libjson-c={0}'.format(spec['json-c'].prefix), + ] - if '+python' in spec: - args.append("--with-python=%s" % spec['python'].command.path) + # Optional dependencies + if '+libtool' in spec: + args.append('--with-libtool=yes') else: - args.append("--with-python=no") + args.append('--with-libtool=no') + + if '+libz' in spec: + args.append('--with-libz={0}'.format(spec['zlib'].prefix)) + else: + args.append('--with-libz=no') + + if '+libiconv' in spec: + args.append('--with-libiconv-prefix={0}'.format( + spec['libiconv'].prefix)) + else: + args.append('--with-libiconv-prefix=no') + + if '+liblzma' in spec: + args.append('--with-liblzma=yes') + else: + args.append('--with-liblzma=no') + + if '+zstd' in spec: + args.append('--with-zstd={0}'.format(spec['zstd'].prefix)) + else: + args.append('--with-zstd=no') + + if '+pg' in spec: + args.append('--with-pg={0}'.format( + spec['postgresql'].prefix.bin.pg_config)) + else: + args.append('--with-pg=no') + + if '+cfitsio' in spec: + args.append('--with-cfitsio={0}'.format(spec['cfitsio'].prefix)) + else: + args.append('--with-cfitsio=no') + + if '+png' in spec: + args.append('--with-png={0}'.format(spec['libpng'].prefix)) + else: + args.append('--with-png=no') + + if '+jpeg' in spec: + args.append('--with-jpeg={0}'.format(spec['jpeg'].prefix)) + else: + args.append('--with-jpeg=no') + + if '+gif' in spec: + args.append('--with-gif={0}'.format(spec['giflib'].prefix)) + else: + args.append('--with-gif=no') + + # https://trac.osgeo.org/gdal/wiki/SOSI + if '+sosi' in spec: + args.append('--with-sosi={0}'.format(spec['fyba'].prefix)) + else: + args.append('--with-sosi=no') + + # https://trac.osgeo.org/gdal/wiki/HDF + if '+hdf4' in spec: + args.append('--with-hdf4={0}'.format(spec['hdf'].prefix)) + else: + args.append('--with-hdf4=no') + + if '+hdf5' in spec: + args.append('--with-hdf5={0}'.format(spec['hdf5'].prefix)) + else: + args.append('--with-hdf5=no') + + if '+kea' in spec: + args.append('--with-kea={0}'.format( + join_path(spec['kealib'].prefix.bin, 'kea-config'))) + else: + args.append('--with-kea=no') + + # https://trac.osgeo.org/gdal/wiki/NetCDF + if '+netcdf' in spec: + args.append('--with-netcdf={0}'.format(spec['netcdf'].prefix)) + else: + args.append('--with-netcdf=no') + + # https://trac.osgeo.org/gdal/wiki/JasPer + if '+jasper' in spec: + args.append('--with-jasper={0}'.format(spec['jasper'].prefix)) + else: + args.append('--with-jasper=no') + + if '+openjpeg' in spec: + args.append('--with-openjpeg=yes') + else: + args.append('--with-openjpeg=no') + + if '+xerces' in spec: + args.append('--with-xerces={0}'.format(spec['xerces-c'].prefix)) + else: + args.append('--with-xerces=no') + + if '+expat' in spec: + args.append('--with-expat={0}'.format(spec['expat'].prefix)) + else: + args.append('--with-expat=no') + + if '+odbc' in spec: + args.append('--with-odbc={0}'.format(spec['unixodbc'].prefix)) + else: + args.append('--with-odbc=no') + + # https://trac.osgeo.org/gdal/wiki/LibCurl + if '+curl' in spec: + args.append('--with-curl={0}'.format( + join_path(spec['curl'].prefix.bin, 'curl-config'))) + else: + args.append('--with-curl=no') + + if '+xml2' in spec: + args.append('--with-xml2={0}'.format( + join_path(spec['libxml2'].prefix.bin, 'xml2-config'))) + else: + args.append('--with-xml2=no') + + # https://trac.osgeo.org/gdal/wiki/SQLite + if '+sqlite3' in spec: + args.append('--with-sqlite3={0}'.format(spec['sqlite'].prefix)) + else: + args.append('--with-sqlite3=no') + + if '+pcre' in spec: + args.append('--with-pcre={0}'.format(spec['pcre'].prefix)) + else: + args.append('--with-pcre=no') if '+geos' in spec: - args.append('--with-geos=yes') - if '+hdf' in spec: - args.append('--with-hdf4=%s' % spec['hdf'].prefix) - if '+hdf5' in spec: - args.append('--with-hdf5=%s' % spec['hdf5'].prefix) - if '+openjpeg' in spec: - args.append('--with-openjpeg=%s' % spec['openjpeg'].prefix) - if '+kea' in spec: - args.append('--with-kea=yes') - if '+netcdf' in spec: - args.append('--with-netcdf=%s' % spec['netcdf'].prefix) + args.append('--with-geos={0}'.format( + join_path(spec['geos'].prefix.bin, 'geos-config'))) + else: + args.append('--with-geos=no') + + if '+qhull' in spec: + args.append('--with-qhull=yes') + else: + args.append('--with-qhull=no') + + if '+opencl' in spec: + args.append('--with-opencl={0}'.format(spec['opencl'].prefix)) + else: + args.append('--with-opencl=no') + + if '+poppler' in spec: + args.append('--with-poppler={0}'.format(spec['poppler'].prefix)) + else: + args.append('--with-poppler=no') + + if '+proj' in spec: + args.append('--with-proj={0}'.format(spec['proj'].prefix)) + if spec.satisfies('^proj@5.0:5.999'): + args.append('--with-proj5-api=yes') + else: + args.append('--with-proj5-api=no') + else: + args.append('--with-proj=no') + + if '+perl' in spec: + args.append('--with-perl=yes') + else: + args.append('--with-perl=no') + + if '+python' in spec: + args.append('--with-python={0}'.format( + spec['python'].command.path)) + else: + args.append('--with-python=no') + + if '+java' in spec: + args.append('--with-java={0}'.format(spec['java'].prefix)) + else: + args.append('--with-java=no') + + if '+armadillo' in spec: + args.append('--with-armadillo={0}'.format( + spec['armadillo'].prefix)) + else: + args.append('--with-armadillo=no') + + if '+cryptopp' in spec: + args.append('--with-cryptopp={0}'.format(spec['cryptopp'].prefix)) + else: + args.append('--with-cryptopp=no') + + if '+crypto' in spec: + args.append('--with-crypto={0}'.format(spec['openssl'].prefix)) + else: + args.append('--with-crypto=no') + + # TODO: add packages for these dependencies + args.extend([ + # https://trac.osgeo.org/gdal/wiki/GRASS + '--with-grass=no', + '--with-libgrass=no', + '--with-pcraster=no', + '--with-dds=no', + '--with-gta=no', + '--with-pcidsk=no', + '--with-ogdi=no', + '--with-fme=no', + '--with-mongocxx=no', + # https://trac.osgeo.org/gdal/wiki/FileGDB + '--with-fgdb=no', + # https://trac.osgeo.org/gdal/wiki/ECW + '--with-ecw=no', + # https://trac.osgeo.org/gdal/wiki/JP2KAK + '--with-kakadu=no', + # https://trac.osgeo.org/gdal/wiki/MrSID + '--with-mrsid=no', + '--with-jp2mrsid=no', + '--with-mrsid_lidar=no', + '--with-jp2lura=no', + # https://trac.osgeo.org/gdal/wiki/MSG + '--with-msg=no', + '--with-bsb=no', + # https://trac.osgeo.org/gdal/wiki/Oracle + '--with-oci=no', + '--with-grib=no', + '--with-gnm=no', + '--with-mysql=no', + # https://trac.osgeo.org/gdal/wiki/Ingres + '--with-ingres=no', + # https://trac.osgeo.org/gdal/wiki/LibKML + '--with-libkml=no', + '--with-dods-root=no', + '--with-spatialite=no', + '--with-rasterlite2=no', + # https://trac.osgeo.org/gdal/wiki/DxfDwg + '--with-teigha=no', + '--with-idb=no', + # https://trac.osgeo.org/gdal/wiki/ArcSDE + '--with-sde=no', + # https://trac.osgeo.org/gdal/wiki/Epsilon + '--with-epsilon=no', + '--with-webp=no', + '--with-sfcgal=no', + '--with-freexl=no', + '--with-pam=no', + '--with-podofo=no', + '--with-pdfium=no', + '--with-php=no', + # https://trac.osgeo.org/gdal/wiki/mdbtools + '--with-mdb=no', + '--with-rasdaman=no', + '--with-mrf=no', + ]) return args diff --git a/var/spack/repos/builtin/packages/gdal/uuid.patch b/var/spack/repos/builtin/packages/gdal/uuid.patch new file mode 100644 index 0000000000..3990dad0cd --- /dev/null +++ b/var/spack/repos/builtin/packages/gdal/uuid.patch @@ -0,0 +1,234 @@ +diff -Naur jasper-1.900.1/src/libjasper/jp2/jp2_cod.c jasper-1.900.1.uuid/src/libjasper/jp2/jp2_cod.c +--- jasper-1.900.1/src/libjasper/jp2/jp2_cod.c 2007-01-19 15:43:05.000000000 -0600 ++++ jasper-1.900.1.uuid/src/libjasper/jp2/jp2_cod.c 2007-03-06 07:49:58.000000000 -0600 +@@ -5,6 +5,11 @@ + * All rights reserved. + */ + ++/* ++ * Modified by Andrey Kiselev to properly handle UUID ++ * box. ++ */ ++ + /* __START_OF_JASPER_LICENSE__ + * + * JasPer License Version 2.0 +@@ -127,6 +132,9 @@ + static int jp2_pclr_getdata(jp2_box_t *box, jas_stream_t *in); + static int jp2_pclr_putdata(jp2_box_t *box, jas_stream_t *out); + static void jp2_pclr_dumpdata(jp2_box_t *box, FILE *out); ++static void jp2_uuid_destroy(jp2_box_t *box); ++static int jp2_uuid_getdata(jp2_box_t *box, jas_stream_t *in); ++static int jp2_uuid_putdata(jp2_box_t *box, jas_stream_t *out); + + /******************************************************************************\ + * Local data. +@@ -164,7 +172,7 @@ + {JP2_BOX_XML, "XML", 0, + {0, 0, 0, 0, 0}}, + {JP2_BOX_UUID, "UUID", 0, +- {0, 0, 0, 0, 0}}, ++ {0, jp2_uuid_destroy, jp2_uuid_getdata, jp2_uuid_putdata, 0}}, + {JP2_BOX_UINF, "UINF", JP2_BOX_SUPER, + {0, 0, 0, 0, 0}}, + {JP2_BOX_ULST, "ULST", 0, +@@ -271,7 +279,7 @@ + } else { + box->datalen = box->len - JP2_BOX_HDRLEN(false); + } +- if (box->len != 0 && box->len < 8) { ++ if (box->len != 0 && box->len < JP2_BOX_HDRLEN(false)) { + goto error; + } + +@@ -876,6 +884,56 @@ + } + } + ++static void jp2_uuid_destroy(jp2_box_t *box) ++{ ++ jp2_uuid_t *uuid = &box->data.uuid; ++ if (uuid->data) ++ { ++ jas_free(uuid->data); ++ uuid->data = NULL; ++ } ++} ++ ++static int jp2_uuid_getdata(jp2_box_t *box, jas_stream_t *in) ++{ ++ jp2_uuid_t *uuid = &box->data.uuid; ++ int i; ++ ++ for (i = 0; i < 16; i++) ++ { ++ if (jp2_getuint8(in, &uuid->uuid[i])) ++ return -1; ++ } ++ ++ uuid->datalen = box->datalen - 16; ++ uuid->data = jas_malloc(uuid->datalen * sizeof(uint_fast8_t)); ++ for (i = 0; i < uuid->datalen; i++) ++ { ++ if (jp2_getuint8(in, &uuid->data[i])) ++ return -1; ++ } ++ return 0; ++} ++ ++static int jp2_uuid_putdata(jp2_box_t *box, jas_stream_t *out) ++{ ++ jp2_uuid_t *uuid = &box->data.uuid; ++ int i; ++ ++ for (i = 0; i < 16; i++) ++ { ++ if (jp2_putuint8(out, uuid->uuid[i])) ++ return -1; ++ } ++ ++ for (i = 0; i < uuid->datalen; i++) ++ { ++ if (jp2_putuint8(out, uuid->data[i])) ++ return -1; ++ } ++ return 0; ++} ++ + static int jp2_getint(jas_stream_t *in, int s, int n, int_fast32_t *val) + { + int c; +diff -Naur jasper-1.900.1/src/libjasper/jp2/jp2_cod.h jasper-1.900.1.uuid/src/libjasper/jp2/jp2_cod.h +--- jasper-1.900.1/src/libjasper/jp2/jp2_cod.h 2007-01-19 15:43:05.000000000 -0600 ++++ jasper-1.900.1.uuid/src/libjasper/jp2/jp2_cod.h 2007-03-06 07:49:58.000000000 -0600 +@@ -5,6 +5,11 @@ + * All rights reserved. + */ + ++/* ++ * Modified by Andrey Kiselev to properly handle UUID ++ * box. ++ */ ++ + /* __START_OF_JASPER_LICENSE__ + * + * JasPer License Version 2.0 +@@ -229,6 +234,12 @@ + jp2_cmapent_t *ents; + } jp2_cmap_t; + ++typedef struct { ++ uint_fast32_t datalen; ++ uint_fast8_t uuid[16]; ++ uint_fast8_t *data; ++} jp2_uuid_t; ++ + #define JP2_CMAP_DIRECT 0 + #define JP2_CMAP_PALETTE 1 + +@@ -257,6 +268,7 @@ + jp2_pclr_t pclr; + jp2_cdef_t cdef; + jp2_cmap_t cmap; ++ jp2_uuid_t uuid; + } data; + + } jp2_box_t; +diff -Naur jasper-1.900.1/src/libjasper/jp2/jp2_enc.c jasper-1.900.1.uuid/src/libjasper/jp2/jp2_enc.c +--- jasper-1.900.1/src/libjasper/jp2/jp2_enc.c 2007-01-19 15:43:05.000000000 -0600 ++++ jasper-1.900.1.uuid/src/libjasper/jp2/jp2_enc.c 2007-03-06 07:49:58.000000000 -0600 +@@ -5,6 +5,11 @@ + * All rights reserved. + */ + ++/* ++ * Modified by Andrey Kiselev to properly handle UUID ++ * box. ++ */ ++ + /* __START_OF_JASPER_LICENSE__ + * + * JasPer License Version 2.0 +@@ -86,7 +91,7 @@ + * Functions. + \******************************************************************************/ + +-int jp2_encode(jas_image_t *image, jas_stream_t *out, char *optstr) ++int jp2_write_header(jas_image_t *image, jas_stream_t *out) + { + jp2_box_t *box; + jp2_ftyp_t *ftyp; +@@ -97,8 +102,6 @@ + long len; + uint_fast16_t cmptno; + jp2_colr_t *colr; +- char buf[4096]; +- uint_fast32_t overhead; + jp2_cdefchan_t *cdefchanent; + jp2_cdef_t *cdef; + int i; +@@ -326,6 +329,26 @@ + jas_stream_close(tmpstream); + tmpstream = 0; + ++ return 0; ++ abort(); ++ ++error: ++ ++ if (box) { ++ jp2_box_destroy(box); ++ } ++ if (tmpstream) { ++ jas_stream_close(tmpstream); ++ } ++ return -1; ++} ++ ++int jp2_write_codestream(jas_image_t *image, jas_stream_t *out, char *optstr) ++{ ++ jp2_box_t *box; ++ char buf[4096]; ++ uint_fast32_t overhead; ++ + /* + * Output the contiguous code stream box. + */ +@@ -358,12 +381,34 @@ + if (box) { + jp2_box_destroy(box); + } +- if (tmpstream) { +- jas_stream_close(tmpstream); +- } + return -1; + } + ++int jp2_encode(jas_image_t *image, jas_stream_t *out, char *optstr) ++{ ++ if (jp2_write_header(image, out) < 0) ++ return -1; ++ if (jp2_write_codestream(image, out, optstr) < 0) ++ return -1; ++ ++ return 0; ++} ++ ++int jp2_encode_uuid(jas_image_t *image, jas_stream_t *out, ++ char *optstr, jp2_box_t *uuid) ++{ ++ if (jp2_write_header(image, out) < 0) ++ return -1; ++ if (uuid) { ++ if (jp2_box_put(uuid, out)) ++ return -1; ++ } ++ if (jp2_write_codestream(image, out, optstr) < 0) ++ return -1; ++ ++ return 0; ++} ++ + static uint_fast32_t jp2_gettypeasoc(int colorspace, int ctype) + { + int type;