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telocal: add new package (#43241)

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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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George Young 2024-03-18 13:08:32 +00:00 committed by GitHub
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var/spack/repos/builtin/packages/telocal/package.py Normal file
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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Telocal(PythonPackage):
"""A package for quantifying transposable elements at a locus level for RNAseq datasets"""
homepage = "https://hammelllab.labsites.cshl.edu/software/#TElocal"
url = "https://github.com/mhammell-laboratory/TElocal/archive/refs/tags/1.1.2.tar.gz"
license("GPL-3.0-only", checked_by="A_N_Other")
version("1.1.2", sha256="d0c7d419d7df06dedbdffbf316fe01fa7324994e0fe1c4ea721835ec9b3e9bb5")
depends_on("py-setuptools", type="build")
depends_on("py-pysam@0.9:", type=("build", "run"))