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hapcut2: adding new version 1.3.1 (#30383)

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snehring 2022-04-29 17:06:47 -05:00 committed by GitHub
parent 52bf7f4157
commit 06b5217c01
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1 changed files with 21 additions and 3 deletions
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var/spack/repos/builtin/packages/hapcut2/package.py
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@ -13,15 +13,33 @@ class Hapcut2(MakefilePackage):
homepage = "https://github.com/vibansal/HapCUT2"
git = "https://github.com/vibansal/HapCUT2.git"
maintainers = ['snehring']
version('v1.3.1', commit='c6481d5fd0618dc3e82b2eb8c2b4835d9a4f6da7')
version('2017-07-10', commit='2966b94c2c2f97813b757d4999b7a6471df1160e',
submodules=True)
submodules=True, deprecated=True)
depends_on('zlib', type='link')
depends_on('htslib@1.3:')
depends_on('curl')
depends_on('openssl')
depends_on('xz')
depends_on('bzip2')
depends_on('zlib')
@when('@v1.3.1:')
def edit(self, spec, prefix):
filter_file('CC=.*$', '', 'Makefile')
filter_file('CFLAGS=.*$', 'CFLAGS=-Wall -g -O3 -D_GNU_SOURCE', 'Makefile')
with working_dir('hairs-src'):
filter_file(r'(keyvalue\* keypointer;)', 'extern \\1',
'hashtable.h')
filter_file(r'(keypointer = ht->blist\[hash\];)', 'keyvalue* \\1',
'hashtable.c')
def install(self, spec, prefix):
mkdirp(prefix.bin)
with working_dir('build'):
if self.spec.satisfies('@2017-07-10'):
install('extractFOSMID', prefix.bin)
install('extractHAIRS', prefix.bin)
install('HAPCUT2', prefix.bin)