New package: qbox (#4711)
* New package: qbox * API changes * Use install instead of shutil for comd * Use any BLAS library * Fix typo * Python2 fix * python2 + fix backslashes * Modified to respond to ld_flags correctly * Modified to use ld_flags * Add ld_flags support
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3 changed files with 100 additions and 3 deletions
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@ -23,7 +23,6 @@
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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##############################################################################
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import shutil
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from spack import *
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from spack import *
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@ -50,7 +49,7 @@ def edit(self, spec, prefix):
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with working_dir('src-mpi'):
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with working_dir('src-mpi'):
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filter_file(r'^CC\s*=.*', 'CC = %s' % self.spec['mpi'].mpicc,
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filter_file(r'^CC\s*=.*', 'CC = %s' % self.spec['mpi'].mpicc,
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'Makefile.vanilla')
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'Makefile.vanilla')
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shutil.move('Makefile.vanilla', 'Makefile')
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install('Makefile.vanilla', 'Makefile')
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def install(self, spec, prefix):
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def install(self, spec, prefix):
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shutil.move('bin', prefix)
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install_tree('bin', prefix.bin)
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@ -70,6 +70,11 @@ class Fftw(AutotoolsPackage):
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depends_on('autoconf', type='build', when='+pfft_patches')
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depends_on('autoconf', type='build', when='+pfft_patches')
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depends_on('libtool', type='build', when='+pfft_patches')
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depends_on('libtool', type='build', when='+pfft_patches')
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@property
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def libs(self):
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result = find_libraries(['libfftw3'], root=self.prefix, recurse=True)
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return result
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def autoreconf(self, spec, prefix):
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def autoreconf(self, spec, prefix):
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if '+pfft_patches' in spec:
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if '+pfft_patches' in spec:
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autoreconf = which('autoreconf')
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autoreconf = which('autoreconf')
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93
var/spack/repos/builtin/packages/qbox/package.py
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93
var/spack/repos/builtin/packages/qbox/package.py
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@ -0,0 +1,93 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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import shutil
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from spack import *
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class Qbox(MakefilePackage):
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"""Qbox is a C++/MPI scalable parallel implementation of first-principles
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molecular dynamics (FPMD) based on the plane-wave, pseudopotential
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formalism. Qbox is designed for operation on large parallel computers."""
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homepage = "http://qboxcode.org/"
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url = "http://qboxcode.org/download/qbox-1.63.7.tgz"
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version('1.63.7', '6b0cf5656f816a1a59e22b268387af33')
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version('1.63.5', 'da3161ab6a455793f2133dd03c04077c')
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version('1.63.4', '8596f32c8fb7e7baa96571c655aaee07')
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version('1.63.2', '55e8f13f37c8e1f43ca831791e3af1da')
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version('1.63.0', '1436c884c553ab026b7f787307e5e6ed')
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version('1.62.3', 'f07e038ab92b85956794e91a40346dbf')
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version('1.60.9', '53b0df612e56bb65e8220d9d9dc8d395')
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version('1.60.4', '060846c9fa03b1f3d7d5ce24a9491de2')
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version('1.60.0', '3856cdc38a27dc17705844c4b9241a21')
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version('1.58.0', 'ec0e6b79fa0ed06742212b1142e36b6a')
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version('1.56.2', 'df7a4217d059a5d351d92e480ed14112')
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version('1.54.4', '8f1a23af7d871317de93810b664ad3aa')
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version('1.54.2', 'aeefee061255dbb36ca7e49378f63ad5')
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version('1.52.3', '1862f2b2056cdf49ec4f746d45a7f1a6')
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version('1.52.2', 'e406deb4c46176f1c15c226868bf61e2')
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version('1.50.4', 'b06ff877257884e4fac321fb5a486266')
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version('1.50.2', '171660b1bb5e57637f019fef055fb764')
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version('1.50.1', '1da528b39da134f86f134432e8fada79')
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version('1.47.0', '86f402651d440e05adc94168d6105da7')
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version('1.45.3', '73b99a73dcbb1b5be9f66f3284750205')
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version('1.45.1', '59e0c2583769b7586981c0d6ffa1b267')
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version('1.45.0', '2c5bfbadfffd330c8c2fe294a10a08e4')
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version('1.44.0', 'c46a2f0f68fe9229aa77779da188cea9')
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depends_on('mpi')
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depends_on('blas')
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depends_on('scalapack')
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depends_on('fftw')
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depends_on('xerces-c')
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build_directory = 'src'
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def edit(self, spec, prefix):
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with open('src/spack.mk', 'w') as mkfile:
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mkfile.write('CXX = {0}\n'.format(spec['mpi'].mpicxx))
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mkfile.write('LD = $(CXX)\n')
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qbox_libs = spec['fftw'].libs + spec['xerces-c'].libs + \
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spec['scalapack'].libs + spec['blas'].libs
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mkfile.write('LDFLAGS = {0}\n'.format(qbox_libs.ld_flags))
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mkfile.write('DFLAGS = {0}\n'.format(' -D'.join((
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'',
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'_LARGEFILE_SOURCE', 'USE_MPI', 'USE_XERCES',
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'XERCESC_3', 'MPICH_IGNORE_CXX_SEEK', 'SCALAPACK',
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'USE_FFTW3', 'FFTWMEASURE', 'FFTW3_2D', 'ADD_',
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))))
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mkfile.write('CXXFLAGS = {0}\n'.format(' '.join((
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'-g', '-O3', '$(DFLAGS)',
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))))
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filter_file('$(TARGET)', 'spack', 'src/Makefile', string=True)
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def install(self, spec, prefix):
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mkdir(prefix.src)
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install('src/qb', prefix.src)
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shutil.move('test', prefix)
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shutil.move('xml', prefix)
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shutil.move('util', prefix)
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