920 lines
26 KiB
C
920 lines
26 KiB
C
/*---------------------------------------------------------------------------*\
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========= |
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\\ / F ield | foam-extend: Open Source CFD
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\\ / O peration | Version: 3.2
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\\ / A nd | Web: http://www.foam-extend.org
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\\/ M anipulation | For copyright notice see file Copyright
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-------------------------------------------------------------------------------
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License
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This file is part of foam-extend.
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foam-extend is free software: you can redistribute it and/or modify it
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under the terms of the GNU General Public License as published by the
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Free Software Foundation, either version 3 of the License, or (at your
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option) any later version.
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foam-extend is distributed in the hope that it will be useful, but
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WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
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Description
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Utility to create patches out of selected boundary faces. Faces come either
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from existing patches or from a faceSet.
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More specifically it:
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- creates new patches (from selected boundary faces). Synchronise faces
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on coupled patches.
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- synchronises points on coupled boundaries
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- remove patches with 0 faces in them
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\*---------------------------------------------------------------------------*/
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#include "cyclicPolyPatch.H"
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#include "syncTools.H"
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#include "argList.H"
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#include "polyMesh.H"
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#include "foamTime.H"
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#include "SortableList.H"
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#include "OFstream.H"
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#include "meshTools.H"
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#include "faceSet.H"
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#include "IOPtrList.H"
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#include "mapPolyMesh.H"
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#include "directTopoChange.H"
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#include "polyModifyFace.H"
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using namespace Foam;
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// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
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namespace Foam
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{
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defineTemplateTypeNameAndDebug(IOPtrList<dictionary>, 0);
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}
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// Combine operator to synchronise points. We choose point nearest to origin so
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// we can use e.g. great,great,great as null value.
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class nearestEqOp
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{
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public:
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void operator()(vector& x, const vector& y) const
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{
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if (magSqr(y) < magSqr(x))
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{
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x = y;
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}
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}
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};
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void changePatchID
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(
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const polyMesh& mesh,
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const label faceID,
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const label patchID,
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directTopoChange& meshMod
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)
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{
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const label zoneID = mesh.faceZones().whichZone(faceID);
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bool zoneFlip = false;
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if (zoneID >= 0)
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{
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const faceZone& fZone = mesh.faceZones()[zoneID];
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zoneFlip = fZone.flipMap()[fZone.whichFace(faceID)];
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}
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meshMod.setAction
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(
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polyModifyFace
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(
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mesh.faces()[faceID], // face
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faceID, // face ID
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mesh.faceOwner()[faceID], // owner
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-1, // neighbour
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false, // flip flux
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patchID, // patch ID
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false, // remove from zone
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zoneID, // zone ID
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zoneFlip // zone flip
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)
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);
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}
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// Filter out the empty patches.
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void filterPatches(polyMesh& mesh)
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{
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const polyBoundaryMesh& patches = mesh.boundaryMesh();
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// Patches to keep
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DynamicList<polyPatch*> allPatches(patches.size());
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label nOldPatches = returnReduce(patches.size(), sumOp<label>());
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// Copy old patches.
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forAll(patches, patchI)
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{
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const polyPatch& pp = patches[patchI];
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// Note: reduce possible since non-proc patches guaranteed in same order
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if (!isA<processorPolyPatch>(pp))
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{
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if (returnReduce(pp.size(), sumOp<label>()) > 0)
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{
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allPatches.append
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(
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pp.clone
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(
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patches,
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allPatches.size(),
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pp.size(),
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pp.start()
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).ptr()
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);
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}
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else
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{
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Info<< "Removing empty patch " << pp.name() << " at position "
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<< patchI << endl;
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}
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}
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}
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// Copy non-empty processor patches
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forAll(patches, patchI)
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{
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const polyPatch& pp = patches[patchI];
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if (isA<processorPolyPatch>(pp))
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{
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if (pp.size())
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{
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allPatches.append
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(
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pp.clone
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(
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patches,
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allPatches.size(),
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pp.size(),
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pp.start()
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).ptr()
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);
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}
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else
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{
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Info<< "Removing empty processor patch " << pp.name()
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<< " at position " << patchI << endl;
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}
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}
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}
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label nAllPatches = returnReduce(allPatches.size(), sumOp<label>());
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if (nAllPatches != nOldPatches)
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{
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Info<< "Removing patches." << endl;
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allPatches.shrink();
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mesh.removeBoundary();
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mesh.addPatches(allPatches);
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}
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else
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{
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Info<< "No patches removed." << endl;
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}
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}
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// Dump for all patches the current match
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void dumpCyclicMatch(const fileName& prefix, const polyMesh& mesh)
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{
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const polyBoundaryMesh& patches = mesh.boundaryMesh();
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forAll(patches, patchI)
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{
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if (isA<cyclicPolyPatch>(patches[patchI]))
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{
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const cyclicPolyPatch& cycPatch =
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refCast<const cyclicPolyPatch>(patches[patchI]);
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label halfSize = cycPatch.size()/2;
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// Dump halves
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{
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OFstream str(prefix+cycPatch.name()+"_half0.obj");
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Pout<< "Dumping " << cycPatch.name()
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<< " half0 faces to " << str.name() << endl;
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meshTools::writeOBJ
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(
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str,
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static_cast<faceList>
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(
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SubList<face>
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(
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cycPatch,
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halfSize
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)
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),
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cycPatch.points()
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);
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}
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{
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OFstream str(prefix+cycPatch.name()+"_half1.obj");
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Pout<< "Dumping " << cycPatch.name()
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<< " half1 faces to " << str.name() << endl;
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meshTools::writeOBJ
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(
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str,
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static_cast<faceList>
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(
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SubList<face>
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(
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cycPatch,
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halfSize,
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halfSize
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)
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),
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cycPatch.points()
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);
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}
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// Lines between corresponding face centres
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OFstream str(prefix+cycPatch.name()+"_match.obj");
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label vertI = 0;
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Pout<< "Dumping cyclic match as lines between face centres to "
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<< str.name() << endl;
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for (label faceI = 0; faceI < halfSize; faceI++)
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{
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const point& fc0 = mesh.faceCentres()[cycPatch.start()+faceI];
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meshTools::writeOBJ(str, fc0);
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vertI++;
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label nbrFaceI = halfSize + faceI;
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const point& fc1 =
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mesh.faceCentres()[cycPatch.start()+nbrFaceI];
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meshTools::writeOBJ(str, fc1);
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vertI++;
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str<< "l " << vertI-1 << ' ' << vertI << nl;
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}
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}
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}
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}
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void separateList
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(
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const vectorField& separation,
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UList<vector>& field
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)
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{
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if (separation.size() == 1)
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{
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// Single value for all.
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forAll(field, i)
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{
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field[i] += separation[0];
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}
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}
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else if (separation.size() == field.size())
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{
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forAll(field, i)
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{
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field[i] += separation[i];
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}
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}
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else
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{
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FatalErrorIn
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(
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"separateList(const vectorField&, UList<vector>&)"
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) << "Sizes of field and transformation not equal. field:"
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<< field.size() << " transformation:" << separation.size()
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<< abort(FatalError);
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}
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}
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// Synchronise points on both sides of coupled boundaries.
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template <class CombineOp>
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void syncPoints
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(
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const polyMesh& mesh,
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pointField& points,
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const CombineOp& cop,
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const point& nullValue
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)
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{
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if (points.size() != mesh.nPoints())
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{
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FatalErrorIn
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(
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"syncPoints"
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"(const polyMesh&, pointField&, const CombineOp&, const point&)"
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) << "Number of values " << points.size()
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<< " is not equal to the number of points in the mesh "
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<< mesh.nPoints() << abort(FatalError);
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}
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const polyBoundaryMesh& patches = mesh.boundaryMesh();
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// Is there any coupled patch with transformation?
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bool hasTransformation = false;
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if (Pstream::parRun())
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{
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// Send
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forAll(patches, patchI)
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{
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const polyPatch& pp = patches[patchI];
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if
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(
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isA<processorPolyPatch>(pp)
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&& pp.nPoints() > 0
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&& refCast<const processorPolyPatch>(pp).owner()
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)
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{
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const processorPolyPatch& procPatch =
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refCast<const processorPolyPatch>(pp);
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// Get data per patchPoint in neighbouring point numbers.
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pointField patchInfo(procPatch.nPoints(), nullValue);
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const labelList& meshPts = procPatch.meshPoints();
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const labelList& nbrPts = procPatch.neighbPoints();
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forAll(nbrPts, pointI)
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{
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label nbrPointI = nbrPts[pointI];
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if (nbrPointI >= 0 && nbrPointI < patchInfo.size())
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{
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patchInfo[nbrPointI] = points[meshPts[pointI]];
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}
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}
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OPstream toNbr(Pstream::blocking, procPatch.neighbProcNo());
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toNbr << patchInfo;
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}
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}
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// Receive and set.
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forAll(patches, patchI)
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{
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const polyPatch& pp = patches[patchI];
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if
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(
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isA<processorPolyPatch>(pp)
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&& pp.nPoints() > 0
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&& !refCast<const processorPolyPatch>(pp).owner()
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)
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{
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const processorPolyPatch& procPatch =
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refCast<const processorPolyPatch>(pp);
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pointField nbrPatchInfo(procPatch.nPoints());
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{
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// We do not know the number of points on the other side
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// so cannot use Pstream::read.
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IPstream fromNbr
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(
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Pstream::blocking,
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procPatch.neighbProcNo()
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);
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fromNbr >> nbrPatchInfo;
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}
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// Null any value which is not on neighbouring processor
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nbrPatchInfo.setSize(procPatch.nPoints(), nullValue);
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if (!procPatch.parallel())
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{
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hasTransformation = true;
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transformList(procPatch.forwardT(), nbrPatchInfo);
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}
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else if (procPatch.separated())
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{
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hasTransformation = true;
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separateList(-procPatch.separation(), nbrPatchInfo);
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}
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const labelList& meshPts = procPatch.meshPoints();
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forAll(meshPts, pointI)
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{
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label meshPointI = meshPts[pointI];
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points[meshPointI] = nbrPatchInfo[pointI];
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}
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}
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}
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}
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// Do the cyclics.
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forAll(patches, patchI)
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{
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const polyPatch& pp = patches[patchI];
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if (isA<cyclicPolyPatch>(pp))
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{
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const cyclicPolyPatch& cycPatch =
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refCast<const cyclicPolyPatch>(pp);
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const edgeList& coupledPoints = cycPatch.coupledPoints();
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const labelList& meshPts = cycPatch.meshPoints();
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pointField half0Values(coupledPoints.size());
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forAll(coupledPoints, i)
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{
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const edge& e = coupledPoints[i];
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label point0 = meshPts[e[0]];
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half0Values[i] = points[point0];
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}
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if (!cycPatch.parallel())
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{
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hasTransformation = true;
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transformList(cycPatch.reverseT(), half0Values);
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}
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else if (cycPatch.separated())
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{
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hasTransformation = true;
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const vectorField& v = cycPatch.coupledPolyPatch::separation();
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separateList(v, half0Values);
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}
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forAll(coupledPoints, i)
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{
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const edge& e = coupledPoints[i];
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label point1 = meshPts[e[1]];
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points[point1] = half0Values[i];
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}
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}
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}
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//- Note: hasTransformation is only used for warning messages so
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// reduction not strictly nessecary.
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//reduce(hasTransformation, orOp<bool>());
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// Synchronize multiple shared points.
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const globalMeshData& pd = mesh.globalData();
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if (pd.nGlobalPoints() > 0)
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{
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if (hasTransformation)
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{
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WarningIn
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(
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"syncPoints"
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"(const polyMesh&, pointField&, const CombineOp&, const point&)"
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) << "There are decomposed cyclics in this mesh with"
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<< " transformations." << endl
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<< "This is not supported. The result will be incorrect"
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<< endl;
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}
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// Values on shared points.
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pointField sharedPts(pd.nGlobalPoints(), nullValue);
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forAll(pd.sharedPointLabels(), i)
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{
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label meshPointI = pd.sharedPointLabels()[i];
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// Fill my entries in the shared points
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sharedPts[pd.sharedPointAddr()[i]] = points[meshPointI];
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}
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// Combine on master.
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Pstream::listCombineGather(sharedPts, cop);
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Pstream::listCombineScatter(sharedPts);
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// Now we will all have the same information. Merge it back with
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// my local information.
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forAll(pd.sharedPointLabels(), i)
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{
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label meshPointI = pd.sharedPointLabels()[i];
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points[meshPointI] = sharedPts[pd.sharedPointAddr()[i]];
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}
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}
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}
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// Main program:
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int main(int argc, char *argv[])
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{
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# include "addRegionOption.H"
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argList::validOptions.insert("overwrite", "");
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# include "setRootCase.H"
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# include "createTime.H"
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runTime.functionObjects().off();
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Foam::word meshRegionName = polyMesh::defaultRegion;
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args.optionReadIfPresent("region", meshRegionName);
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const bool overwrite = args.optionFound("overwrite");
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Info<< "Reading createPatchDict." << nl << endl;
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IOdictionary dict
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(
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IOobject
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(
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"createPatchDict",
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runTime.system(),
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(
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meshRegionName != polyMesh::defaultRegion
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? meshRegionName
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: word::null
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),
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runTime,
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IOobject::MUST_READ,
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IOobject::NO_WRITE,
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false
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)
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);
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// Whether to synchronise points
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const Switch pointSync(dict.lookup("pointSync"));
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// Change tolerance in controlDict instead. HJ, 22/Oct/2008
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// Set the matching tolerance so we can read illegal meshes
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// scalar tol = readScalar(dict.lookup("matchTolerance"));
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// Info<< "Using relative tolerance " << tol
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// << " to match up faces and points" << nl << endl;
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// polyPatch::matchTol_ = tol;
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# include "createNamedPolyMesh.H"
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const word oldInstance = mesh.pointsInstance();
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const polyBoundaryMesh& patches = mesh.boundaryMesh();
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// If running parallel check same patches everywhere
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patches.checkParallelSync(true);
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dumpCyclicMatch("initial_", mesh);
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// Read patch construct info from dictionary
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PtrList<dictionary> patchSources(dict.lookup("patchInfo"));
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// 1. Add all new patches
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// ~~~~~~~~~~~~~~~~~~~~~~
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if (patchSources.size())
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{
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// Old and new patches.
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DynamicList<polyPatch*> allPatches(patches.size()+patchSources.size());
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label startFaceI = mesh.nInternalFaces();
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// Copy old patches.
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forAll(patches, patchI)
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{
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const polyPatch& pp = patches[patchI];
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|
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if (!isA<processorPolyPatch>(pp))
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{
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allPatches.append
|
|
(
|
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pp.clone
|
|
(
|
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patches,
|
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patchI,
|
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pp.size(),
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startFaceI
|
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).ptr()
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);
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startFaceI += pp.size();
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}
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}
|
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forAll(patchSources, addedI)
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{
|
|
const dictionary& dict = patchSources[addedI];
|
|
|
|
word patchName(dict.lookup("name"));
|
|
|
|
label destPatchI = patches.findPatchID(patchName);
|
|
|
|
if (destPatchI == -1)
|
|
{
|
|
dictionary patchDict(dict.subDict("dictionary"));
|
|
|
|
destPatchI = allPatches.size();
|
|
|
|
Info<< "Adding new patch " << patchName
|
|
<< " as patch " << destPatchI
|
|
<< " from " << patchDict << endl;
|
|
|
|
patchDict.set("nFaces", 0);
|
|
patchDict.set("startFace", startFaceI);
|
|
|
|
// Add an empty patch.
|
|
allPatches.append
|
|
(
|
|
polyPatch::New
|
|
(
|
|
patchName,
|
|
patchDict,
|
|
destPatchI,
|
|
patches
|
|
).ptr()
|
|
);
|
|
}
|
|
}
|
|
|
|
// Copy old patches.
|
|
forAll(patches, patchI)
|
|
{
|
|
const polyPatch& pp = patches[patchI];
|
|
|
|
if (isA<processorPolyPatch>(pp))
|
|
{
|
|
allPatches.append
|
|
(
|
|
pp.clone
|
|
(
|
|
patches,
|
|
patchI,
|
|
pp.size(),
|
|
startFaceI
|
|
).ptr()
|
|
);
|
|
startFaceI += pp.size();
|
|
}
|
|
}
|
|
|
|
allPatches.shrink();
|
|
mesh.removeBoundary();
|
|
mesh.addPatches(allPatches);
|
|
|
|
Info<< endl;
|
|
}
|
|
|
|
|
|
|
|
// 2. Repatch faces
|
|
// ~~~~~~~~~~~~~~~~
|
|
|
|
directTopoChange meshMod(mesh);
|
|
|
|
|
|
forAll(patchSources, addedI)
|
|
{
|
|
const dictionary& dict = patchSources[addedI];
|
|
|
|
word patchName(dict.lookup("name"));
|
|
|
|
label destPatchI = patches.findPatchID(patchName);
|
|
|
|
if (destPatchI == -1)
|
|
{
|
|
FatalErrorIn(args.executable()) << "patch " << patchName
|
|
<< " not added. Problem." << abort(FatalError);
|
|
}
|
|
|
|
word sourceType(dict.lookup("constructFrom"));
|
|
|
|
if (sourceType == "patches")
|
|
{
|
|
labelHashSet patchSources(patches.patchSet(dict.lookup("patches")));
|
|
|
|
// Repatch faces of the patches.
|
|
forAllConstIter(labelHashSet, patchSources, iter)
|
|
{
|
|
const polyPatch& pp = patches[iter.key()];
|
|
|
|
Info<< "Moving faces from patch " << pp.name()
|
|
<< " to patch " << destPatchI << endl;
|
|
|
|
forAll(pp, i)
|
|
{
|
|
changePatchID
|
|
(
|
|
mesh,
|
|
pp.start() + i,
|
|
destPatchI,
|
|
meshMod
|
|
);
|
|
}
|
|
}
|
|
}
|
|
else if (sourceType == "set")
|
|
{
|
|
word setName(dict.lookup("set"));
|
|
|
|
faceSet faces(mesh, setName);
|
|
|
|
Info<< "Read " << returnReduce(faces.size(), sumOp<label>())
|
|
<< " faces from faceSet " << faces.name() << endl;
|
|
|
|
// Sort (since faceSet contains faces in arbitrary order)
|
|
labelList faceLabels(faces.toc());
|
|
|
|
SortableList<label> patchFaces(faceLabels);
|
|
|
|
forAll(patchFaces, i)
|
|
{
|
|
label faceI = patchFaces[i];
|
|
|
|
if (mesh.isInternalFace(faceI))
|
|
{
|
|
FatalErrorIn(args.executable())
|
|
<< "Face " << faceI << " specified in set "
|
|
<< faces.name()
|
|
<< " is not an external face of the mesh." << endl
|
|
<< "This application can only repatch existing boundary"
|
|
<< " faces." << exit(FatalError);
|
|
}
|
|
|
|
changePatchID
|
|
(
|
|
mesh,
|
|
faceI,
|
|
destPatchI,
|
|
meshMod
|
|
);
|
|
}
|
|
}
|
|
else
|
|
{
|
|
FatalErrorIn(args.executable())
|
|
<< "Invalid source type " << sourceType << endl
|
|
<< "Valid source types are 'patches' 'set'" << exit(FatalError);
|
|
}
|
|
}
|
|
Info<< endl;
|
|
|
|
|
|
// Change mesh, use inflation to reforce calculation of transformation
|
|
// tensors.
|
|
Info<< "Doing topology modification to order faces." << nl << endl;
|
|
autoPtr<mapPolyMesh> map = meshMod.changeMesh(mesh, true);
|
|
mesh.movePoints(map().preMotionPoints());
|
|
|
|
dumpCyclicMatch("coupled_", mesh);
|
|
|
|
// Synchronise points.
|
|
if (!pointSync)
|
|
{
|
|
Info<< "Not synchronising points." << nl << endl;
|
|
}
|
|
else
|
|
{
|
|
Info<< "Synchronising points." << nl << endl;
|
|
|
|
// This is a bit tricky. Both normal and position might be out and
|
|
// current separation also includes the normal
|
|
// ( separation_ = (nf&(Cr - Cf))*nf ).
|
|
|
|
// For processor patches:
|
|
// - disallow multiple separation/transformation. This basically
|
|
// excludes decomposed cyclics. Use the (probably 0) separation
|
|
// to align the points.
|
|
// For cyclic patches:
|
|
// - for separated ones use our own recalculated offset vector
|
|
// - for rotational ones use current one.
|
|
|
|
forAll(mesh.boundaryMesh(), patchI)
|
|
{
|
|
const polyPatch& pp = mesh.boundaryMesh()[patchI];
|
|
|
|
if (pp.size() && isA<coupledPolyPatch>(pp))
|
|
{
|
|
const coupledPolyPatch& cpp =
|
|
refCast<const coupledPolyPatch>(pp);
|
|
|
|
if (cpp.separated())
|
|
{
|
|
Info<< "On coupled patch " << pp.name()
|
|
<< " separation[0] was "
|
|
<< cpp.separation()[0] << endl;
|
|
|
|
if (isA<cyclicPolyPatch>(pp))
|
|
{
|
|
const cyclicPolyPatch& cycpp =
|
|
refCast<const cyclicPolyPatch>(pp);
|
|
|
|
if (cycpp.transform() == cyclicPolyPatch::TRANSLATIONAL)
|
|
{
|
|
Info<< "On cyclic translation patch " << pp.name()
|
|
<< " forcing uniform separation of "
|
|
<< cycpp.separationVector() << endl;
|
|
const_cast<vectorField&>(cpp.separation()) =
|
|
pointField(1, cycpp.separationVector());
|
|
}
|
|
else
|
|
{
|
|
const_cast<vectorField&>(cpp.separation()) =
|
|
pointField
|
|
(
|
|
1,
|
|
pp[pp.size()/2].centre(mesh.points())
|
|
- pp[0].centre(mesh.points())
|
|
);
|
|
}
|
|
}
|
|
else
|
|
{
|
|
const_cast<vectorField&>(cpp.separation())
|
|
.setSize(1);
|
|
}
|
|
Info<< "On coupled patch " << pp.name()
|
|
<< " forcing uniform separation of "
|
|
<< cpp.separation() << endl;
|
|
}
|
|
else if (!cpp.parallel())
|
|
{
|
|
Info<< "On coupled patch " << pp.name()
|
|
<< " forcing uniform rotation of "
|
|
<< cpp.forwardT()[0] << endl;
|
|
|
|
const_cast<tensorField&>
|
|
(
|
|
cpp.forwardT()
|
|
).setSize(1);
|
|
const_cast<tensorField&>
|
|
(
|
|
cpp.reverseT()
|
|
).setSize(1);
|
|
|
|
Info<< "On coupled patch " << pp.name()
|
|
<< " forcing uniform rotation of "
|
|
<< cpp.forwardT() << endl;
|
|
}
|
|
}
|
|
}
|
|
|
|
Info<< "Synchronising points." << endl;
|
|
|
|
pointField newPoints(mesh.points());
|
|
|
|
syncPoints
|
|
(
|
|
mesh,
|
|
newPoints,
|
|
nearestEqOp(),
|
|
point(GREAT, GREAT, GREAT)
|
|
);
|
|
|
|
scalarField diff(mag(newPoints-mesh.points()));
|
|
Info<< "Points changed by average:" << gAverage(diff)
|
|
<< " max:" << gMax(diff) << nl << endl;
|
|
|
|
mesh.movePoints(newPoints);
|
|
}
|
|
|
|
// 3. Remove zeros-sized patches
|
|
// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
|
|
|
|
Info<< "Removing patches with no faces in them." << nl<< endl;
|
|
filterPatches(mesh);
|
|
|
|
|
|
dumpCyclicMatch("final_", mesh);
|
|
|
|
|
|
// Set the precision of the points data to 10
|
|
IOstream::defaultPrecision(10);
|
|
|
|
if (!overwrite)
|
|
{
|
|
runTime++;
|
|
}
|
|
else
|
|
{
|
|
mesh.setInstance(oldInstance);
|
|
}
|
|
|
|
// Write resulting mesh
|
|
Info<< "Writing repatched mesh to " << runTime.timeName() << nl << endl;
|
|
mesh.write();
|
|
|
|
Info<< "End\n" << endl;
|
|
|
|
return 0;
|
|
}
|
|
|
|
|
|
// ************************************************************************* //
|